Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq43510 178 4e-40 seq2347 134 5e-27 seq28361 107 6e-19 seq60516 95.1 4e-15 >seq43510 Length=3912 Score = 178 bits (196), Expect = 4e-40 Identities = 250/339 (74%), Gaps = 18/339 (5%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| ||||||||||| ||||||||||||| ||| | ||||| |||||||||| Sbjct 751 ACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGT 692 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTT--CGCGGACCAGCTCGGACTGAA 24937 |||| ||||| |||||||||||||||||||| | | ||| | ||| ||| ||| Sbjct 691 TCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCGCAGGCCA--CCGGCCTGGG 634 Query 24938 GGTCGGCGAATTCATCTGGACCGGC--GGCGACGTCCACCTGT-ATTCGAACCACGTCGA 24994 || ||||| ||| || || || ||||| | ||||||| | || |||||| |||| Sbjct 633 CGTGGGCGATTTC--GTGCACACGCTGGGCGATGCGCACCTGTAACTCCAACCACTTCGA 576 Query 24995 GCAGGCGACCGAACAACTGTCGCGCACGCACACGGGC-TATCCGTGGCTGGCGCTGAATC 25053 |||||| |||||||||| ||||||||| | ||| | | ||| || || |||||||| Sbjct 575 ACAGGCGCGCGAACAACTGGCGCGCACGC-CGCGGCCGTTGCCGCGGTTGCGGCTGAATC 517 Query 25054 ACCGCG---ACTCGA--TCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCG 25108 | ||| || ||| | |||| | |||| ||||||| || || ||||| Sbjct 516 -CGGCGGTCAC-CGACCTGTTCGCCTTCACCTACGACGACATCGCCATCGAGGGCTATGA 459 Query 25109 GCCGCACCCGGTCATCAAGGCCCCCGTGGCCGTGTAAAG 25147 ||||| |||| |||||||| || |||||||| | ||| Sbjct 458 CCCGCATCCGGCGATCAAGGCGCCGGTGGCCGTATGAAG 420 >seq2347 Length=4848 Score = 134 bits (148), Expect = 5e-27 Identities = 135/174 (78%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 24828 CTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTCAATATC 24887 |||||||||||||| || |||||| ||| ||| | |||||||||||||| ||||| ||| Sbjct 1649 CTGAGCTGCCAGCTGTATCAGCGCTCCGCCGACATCTTCCTCGGCGTGCCCTTCAACATC 1590 Query 24888 GCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCT---CGGACTGAAGGTCGGC 24944 || ||||| ||||||||||||| | | | || |||| | ||| ||| || ||| Sbjct 1589 GCCAGCTATGCGCTGCTGACCC---TGATGGTGGCCCAGGTCACCGGGCTGCAGCCGGGC 1533 Query 24945 GAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAG 24998 |||||||||||||||||||| || ||| || ||| | || ||| | |||||| Sbjct 1532 GAATTCATCTGGACCGGCGGTGATTGCCATCTCTATGCCAATCACCTGGAGCAG 1479 >seq28361 Length=3781 Score = 107 bits (118), Expect = 6e-19 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 24833 CTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTCAATATCGCGAG 24892 ||| ||||| |||||||| | ||| | ||||| || ||||||| || ||||| || Sbjct 2253 CTGTCAGCTTTACCAGCGTTCCTGCGACATTTTCCTGGGGCTGCCGTTTAACATCGCCAG 2194 Query 24893 CTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGGTCGGCGAATTCAT 24952 ||| ||||||||| ||| | ||||| | ||| || ||| ||||||| || || | Sbjct 2193 CTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGACTTTGT 2134 Query 24953 CTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGGCGACCGAACAACT 25012 ||||||||||||||| ||||| || |||||| | ||||||||| | ||||| Sbjct 2133 CTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCTGCAACT 2074 Query 25013 GTCGCGC 25019 | ||||| Sbjct 2073 GACGCGC 2067 >seq60516 Length=573 Score = 95.1 bits (104), Expect = 4e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| ||||||||||| ||||||||||||| ||| | ||||| |||||||||| Sbjct 497 ACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGT 556 Query 24880 TCAATATCGCGAGCTAC 24896 |||| ||||| |||||| Sbjct 557 TCAACATCGCCAGCTAC 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163918773374400