Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq29160 132 1e-26 seq40730 122 2e-23 seq34674 111 4e-20 seq82134 95.1 3e-15 seq44258 93.3 1e-14 seq38246 93.3 1e-14 seq77310 91.5 4e-14 seq10342 86.0 2e-12 >seq29160 Length=3305 Score = 132 bits (146), Expect = 1e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31585 ACGGCGTTAACCAGTTGTGCTTCATAGCCAAGAGTTCCGTTTACAACGTGCGTCTTCTGT 31644 || ||||| ||||||||||| ||||||||||| || ||||| | | || ||||| Sbjct 2524 ACCGCGTTCACCAGTTGTGCCTCATAGCCAAGTACGCCATTTACCAGGAAGGTTTTCTGA 2583 Query 31645 GCAACAGCGAACGGGTTCATGCCCCATTGCGCCGCCTGCATGGTTACTGCCAGGCAGTCA 31704 ||||| ||||| |||||||||| ||| || || |||||||| | || || || |||||| Sbjct 2584 GCAACGGCGAAGGGGTTCATGCGCCACTGTGCGGCCTGCATTGCGACAGCAAGACAGTCA 2643 Query 31705 GACGGCTTACCTGCAAGATGAGCAGGAACGGTAGCTTTACTGCAGGCCATCAACTCAGCG 31764 | | || ||||| || || || || |||| | || | |||| |||||| | ||||| Sbjct 2644 GCTGTTTTTCCTGCCAGGTGTGCCGGTACGGAAACTCTGCTGCTGGCCATGATGTCAGCA 2703 Query 31765 AAGCGCACCAGTTGATTCATGCCTTCAGGACTGAAGAT 31802 ||||| | ||| | | || | || |||||||| || Sbjct 2704 AAGCGAATCAGCTTGTCCAGTGCATCCGGACTGAAAAT 2741 >seq40730 Length=518 Score = 122 bits (134), Expect = 2e-23 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 2883 ATGCCACAACGCTGAGAGCACTGCCGGTGTCCGAATCGAACTGACCATTTCCTTGCCCAA 2942 ||| ||||||| |||||||||||||||||||||| |||| |||| ||||| ||||||| Sbjct 9 ATGTCACAACGGAAAGAGCACTGCCGGTGTCCGAATTGAACGGACCTTTTCCCTGCCCAA 68 Query 2943 CCCTCCCAACTGAATGGGACTGTCTGGAATTGAACCAGCACTTATGCCTTGCTCGTCAAT 3002 ||| | | | || | |||| ||||||||||| |||||| ||||||||||||||| Sbjct 69 CCCCTCTCATTTAAGAGAGCTGTTCGGAATTGAACCGACACTTACGCCTTGCTCGTCAAT 128 Query 3003 GCTCT 3007 ||||| Sbjct 129 GCTCT 133 >seq34674 Length=2745 Score = 111 bits (122), Expect = 4e-20 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 38385 AGTTGGAGCTGGTGCTCGACGAGCAGGAACTGGAAATGCTGGCGCGGAACTGCGCCGCCC 38444 || ||||| | || || || ||||||||||||| ||||||| || ||| ||| || | Sbjct 1793 AGGTGGAGATTGTTCTTGATGAGCAGGAACTGGCGATGCTGGAGCAGAATTGCACCTTAC 1852 Query 38445 GTCGCTATGGTCGTGCGCCGTATGACATGAGCGAGTACATCGCGTTGCTTATTCGGCAGG 38504 | || || ||||| || || ||| || ||||| ||||| |||||||||| |||| Sbjct 1853 GCCGTCCAGGGCGTGCCCCCTACGACCTGGCAGAGTATATCGCTCTGCTTATTCGCCAGG 1912 Query 38505 ATGATGCCCGGGTGCGTGGGCGTATCAAGTCAATCAGTGCTAACCG---GTGCGGTAAGT 38561 | ||||| ||||| ||| | || |||| || || || ||| || ||||||||||| Sbjct 1913 ACGATGCGCGGGTCCGTAGCCGGTTCAAATCGATGAG---TAAGCGCAAGTGCGGTAAGT 1969 Query 38562 GTGGCGAT 38569 |||| ||| Sbjct 1970 GTGGTGAT 1977 >seq82134 Length=394 Score = 95.1 bits (104), Expect = 3e-15 Identities = 178/251 (71%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 1236 GTATGGGAAGTAGCAGAGGGTGCGCTTACGGACGAGGATACCGAAATTATTTGGGTG-GC 1294 || |||||||| || || || || | || ||||| | || || || ||| | | Sbjct 380 GTGTGGGAAGTGGCTGAAGGCGCA-TGACAGACGAAAACACGATCATCATCTGGATTCGT 322 Query 1295 GTTTGGTAACCCGACGC-GTAACACTGGGCGTTTCCGTGAATGTTTCCGCAAATACAAAC 1353 ||| || ||||| || | | ||||| || || ||||| || || || |||||| | | Sbjct 321 GTTCGGCAACCCCACACAGGAACACAGGCCGATTCCGCGAGTGCTTTCGCAAAATCGCAG 262 Query 1354 ACCGCTGGA-AGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGCACCAACAAGCAGCAA 1412 | |||||| | ||| ||| || ||||| || || ||| ||||| |||||| || | Sbjct 261 GC-GCTGGATACAGCG-GCAAATCGACAGTCGGACGGTGCCTGGCACGAACAAGAAGAAG 204 Query 1413 CTGCAAAAGTGGGTGGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTTCGCGTGCGC 1472 || | ||||||| ||||||| |||||||||||||| || || ||||| || |||||| Sbjct 203 CTCGACGAGTGGGTTAACGACTATGGCGAAGACAGCGA-TTTGT-AAGGTGCGAGTGCGC 146 Query 1473 GGGATCTTCCC 1483 || || || || Sbjct 145 GGCATGTTTCC 135 >seq44258 Length=764 Score = 93.3 bits (102), Expect = 1e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 31585 ACGGCGTTAACCAGTTGTGCTTCATAGCCAAGAGTTCCGTTTACAACGTGCGTCTTCTGT 31644 || ||||| |||||||| || ||||||||||| || ||| | |||| || || ||||| Sbjct 578 ACTGCGTTGACCAGTTGAGCCTCATAGCCAAGGGTACCGCTGACAATATGGGTTTTCTGA 519 Query 31645 GCAACAGCGAACGGGTTCATGCCCCATTGCGCCGCCTGCATGGTTACTGCCAGGCA 31700 || || |||||||||| | |||||| | || |||||||| |||||||| ||| Sbjct 518 GCGACGGCGAACGGGTCAAGGCCCCAGCGTGCGGCCTGCATAACTACTGCCATGCA 463 >seq38246 Length=2704 Score = 93.3 bits (102), Expect = 1e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 31585 ACGGCGTTAACCAGTTGTGCTTCATAGCCAAGAGTTCCGTTTACAACGTGCGTCTTCTGT 31644 || ||||| |||||||| || ||||||||||| || ||| | |||| || || ||||| Sbjct 1856 ACTGCGTTGACCAGTTGAGCCTCATAGCCAAGGGTACCGCTGACAATATGGGTTTTCTGA 1915 Query 31645 GCAACAGCGAACGGGTTCATGCCCCATTGCGCCGCCTGCATGGTTACTGCCAGGCA 31700 || || |||||||||| | |||||| |||| |||||||| ||||||| ||| Sbjct 1916 GCGACGGCGAACGGGTCAAGGCCCCAGCGCGCGGCCTGCATCACAACTGCCATGCA 1971 >seq77310 Length=2003 Score = 91.5 bits (100), Expect = 4e-14 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 28045 CATGATCTTCGCCGCACAGCCAGCACGCTGTTGCATGAGGCTGGTTATCCAT-CTGACTG 28103 |||||||| || | || || ||||| ||| |||||||||| || || | || ||||||| Sbjct 687 CATGATCTCCGTAGAACTGCGAGCACTCTGCTGCATGAGGCCGGATA-CAATACTGACTG 629 Query 28104 GATAGAAAAGGCGCTGGCGCATGAGCAAAAGGGAGTGCGTGCGGTATACAACAAAGCGGA 28163 ||| ||||| |||| |||| || || || || | |||||||| |||||||| || Sbjct 628 GATCGAAAAATGCTTGGCAAATGAACAGAAAGGGGTAAGGGCGGTATATAACAAAGCTGA 569 Query 28164 GTATGCGCG-GCAGCGCGCCTACATGTTGCAGCAGTGGGCTGATATGGTTGAT 28215 ||| || | ||| | || | ||| | ||| | |||||||||||| | ||| Sbjct 568 ATAT-CGAGAGCAAAGAGCATCAATGCTACAGGATTGGGCTGATATGATAGAT 517 >seq10342 Length=7320 Score = 86.0 bits (94), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 ||| ||| | |||||| ||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 1518 TGGCGCGCCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCC 1577 Query 2873 AACTGAGCTA 2882 | |||||||| Sbjct 1578 AGCTGAGCTA 1587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123475848195600