Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_017969.1 Length=108853 Score E Sequences producing significant alignments: (Bits) Value seq33499 504 5e-138 seq33108 109 4e-19 seq107223 95.1 8e-15 seq34305 95.1 8e-15 >seq33499 Length=26748 Score = 504 bits (558), Expect = 5e-138 Identities = 612/840 (73%), Gaps = 0/840 (0%) Strand=Plus/Minus Query 36817 TTATTTATTACGCATATCCATGATCATTTGGCCATCATAACCAGTACCAACTACCGTCTG 36876 |||||| ||||| |||||| |||| | || || || || ||||| || || || Sbjct 24100 TTATTTGTTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTG 24041 Query 36877 TGGTACACCACCTTGATACTTCTGAGCACGGATCATTTCAACTTCCAGTTGCTTCCAGCG 36936 ||||||||||||||| || |||| |||||| ||||||||||||| ||||| ||||| || Sbjct 24040 TGGTACACCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACG 23981 Query 36937 AATCATCTCAGGAGTAATGGTACGTTGCAATGCGGCGTTAGCTTCAGCTTCTTTCTTAGC 36996 ||||||||| ||||| || || ||||| | |||||||||||||||||| | ||| Sbjct 23980 AATCATCTCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGC 23921 Query 36997 TGCGTACAGTTTAGCATCTGCGTCACGTTCATTAGCAATAGCTTGGTTGTTGCGAGCTTC 37056 || || | |||||||||||| || ||||| || || |||| || || || ||||| Sbjct 23920 AGCATATAATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTC 23861 Query 37057 ACGATCTGCTTCTGCTTGTTTAACTTTTTGCTGTGCTTCCTGTTCAACACGAGCTAATTC 37116 ||||| || ||||| | |||||| |||||||| ||| | | || || | | || Sbjct 23860 TCGATCAGCCTCTGCCTTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGATC 23801 Query 37117 AGCTTTAGCAGCATTAACCTGTTCTTCACGAACTTTGGTATTCTGTACCTGTTCCATGAT 37176 ||| | || || ||||||||||||||||||| || ||||| |||||| | |||||| Sbjct 23800 AGCCTGTGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGAT 23741 Query 37177 TACCGGTGGCAAAGTAATATCCTGAAGGAACACCTGCTTAACTGTGTAACCATATGGGCG 37236 ||| ||||| || ||||| || | ||| | | || || || |||||||| || || Sbjct 23740 TACATCAGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACG 23681 Query 37237 TGCATACTCTTCAACTTCCTGTTGAATTGCAGTTTGCAATTGAGCCTGAATTTTAGCATC 37296 ||| || |||||| ||| || | || | ||||| || |||||||| | ||| | Sbjct 23680 TGCGTAGGCTTCAATTTCAGCTTTTACTGAATCCTGCAACTGCGCCTGAATCTCAGCGTT 23621 Query 37297 AAATAAATCTTGTGCTTTAGGTACAGACTTACCAAACTCACGAATAGTAGACAGTAATTT 37356 || ||||| |||||||| || || || ||||||||||| || | ||| || | | || Sbjct 23620 GAACAAATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAAAGCTT 23561 Query 37357 TTCAGTTACATATTTGTCTAACGCTTGATCCTGAGTACCTGCATTAATACGGTTAATCGG 37416 || |||||||| || | ||||| || ||||| ||||||||||| ||||| || || Sbjct 23560 TTGCTCAACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTCATAGG 23501 Query 37417 TGCTTTAGAACCATCAAACTGCAACATAACAGTCAGGTCAACAGTGGATTTAAACTTATC 37476 ||| |||||||||||||||||||||||||| |||| || || || |||||||||||||| Sbjct 23500 TGCCTTAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAACTTATC 23441 Query 37477 CTGACTAGGAACCTGAAGTTTATCTAATTTTAGAGCAATATCTTTAGTACTAAAANNNNN 37536 |||||| || || || | |||||| || ||| |||||||| ||||| ||| Sbjct 23440 CTGACTCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAAGTCTC 23381 Query 37537 NNNNNNNNNNNNNNGATTTACAATATGGAAACCAGGTAATACTGGATTAGGATCAACTTT 37596 | || || | |||||| || || ||| |||||||||| |||||| Sbjct 23380 AAAGCTTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTAACTTT 23321 Query 37597 ACCCAAGAAAGTCTGGGTCTTAACAGTACCGTCTTGAACAACGGTATAGGAGTTAAGAGC 37656 ||||| || || || || || || ||||| ||||| || | | ||||||| || ||||| Sbjct 23320 ACCCATAAAGGTTTGTGTTTTTACTGTACCATCTTGCACGATGATATAGGAATTTAGAGC 23261 >seq33108 Length=3479 Score = 109 bits (120), Expect = 4e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 27067 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27126 ||||| ||||| ||| ||||| |||||||||| | ||||| | |||||| || || Sbjct 2955 GTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACG 2896 Query 27127 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATCC 27186 || || || || ||||| ||||||| ||| ||||| || |||||||||||| || || Sbjct 2895 GCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCGTCT 2836 Query 27187 AAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTGACCACCTTC 27236 ||| ||||||| | || ||||| |||| |||||| || ||||| Sbjct 2835 TCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTC 2786 >seq107223 Length=315 Score = 95.1 bits (104), Expect = 8e-15 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 27053 ATTACATCGC-CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGT 27111 |||||||||| ||| | || ||||| | || || || ||||| |||||||||||| Sbjct 254 ATTACATCGCGCTGTGGAAC-GTACGGTTGATCACATCAAGTTGTTGCTCACGAGTCAGT 196 Query 27112 GCATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGA 27171 | |||| |||||| || || || ||||| |||||||| || ||||| ||||| || Sbjct 195 TTAATAAAGTTAACAGCATAACCGGATACACGAATGGTCAATTGTGGATAGTTTTCTGGG 136 Query 27172 TGTTTCTGCGCATCCAAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTG 27227 || | | |||||||| ||| || ||||| || || || ||||| || || || Sbjct 135 TGCTCCATCGCATCCATAAGTTGTTCACGATCAAACACGTTCACATTCAGATGATG 80 >seq34305 Length=2218 Score = 95.1 bits (104), Expect = 8e-15 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 27063 CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCG 27122 ||| ||||| ||||| |||| ||||| | ||| || || || || | ||||| || Sbjct 595 CTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCG 654 Query 27123 AACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGC 27182 ||| || ||||| || || |||||||| |||||||||||||| ||||| | | | || Sbjct 655 AACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGC 714 Query 27183 ATCCAAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTGACCACCTTCGAT 27239 |||| | | || ||| | | || |||||||| || ||||| || ||||| || Sbjct 715 GTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347651839896200