Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq89197 170 3e-37 seq43837 116 7e-21 >seq89197 Length=938 Score = 170 bits (188), Expect = 3e-37 Identities = 231/316 (73%), Gaps = 12/316 (4%) Strand=Plus/Minus Query 23060 CCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGC 23119 |||| || | || ||||| ||| || || ||||||||||||||||| ||||||||||| | Sbjct 938 CCAGGGTCA-CGTGCCTTCCCACTCCGGCTCCAGCGGCGTGACGTTGACGATGATGCCAC 880 Query 23120 AACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGT 23179 |||||||||| || ||||| |||||||| | || |||||||||||| ||||| Sbjct 879 AACGCGCATAGGTGCTCTTGCCCAGGCAGATGGTCAGCACATCACGCGGAATGCGGAAGT 820 Query 23180 GTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTT 23238 ||| |||| ||||| ||||| ||| ||||||||||| || | | | | | Sbjct 819 ATTCGACCGTGCGGGCCAGGGCGAAGGAGTTAGGCGGAATGATGCAAAC---GTCACTCT 763 Query 23239 GGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTA 23298 || || ||| ||||| | | ||| ||||||||| || ||||| | || Sbjct 762 TGA---TG--TCG--ACGAAGCTCTTTTCATCGAAATTCTTCGGGTCGACGATGGCCGAG 710 Query 23299 TTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAA 23358 | | |||||||| ||||||||||| | ||||||| | |||||||||||||||||| Sbjct 709 TGGATATTGGTGAACACCTTGAATTCATCGGCGCAACGTACGTCGTAGCCGTAGCTGGAA 650 Query 23359 ACACCGTAGGGAATGA 23374 |||||||||| |||| Sbjct 649 ACACCGTAGGAGATGA 634 >seq43837 Length=359 Score = 116 bits (128), Expect = 7e-21 Identities = 190/270 (70%), Gaps = 9/270 (3%) Strand=Plus/Minus Query 23103 GTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTC 23162 ||| |||||||||||||| ||||| || || ||||| || ||||| | ||||| Sbjct 359 GTTGACGATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGACAGATGGTCAGCACGTC 300 Query 23163 ACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222 ||||||||| ||||| || |||| ||||| || || ||||| |||||||| Sbjct 299 ACGCGGAATACGGAAGTACTCGACCGTGCGGGCCAGGGCAAAGGAATTCGGTGGAATGAT 240 Query 23223 CAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGG 23282 | | || || || || || |||||| | | ||| ||||||||| || Sbjct 239 GCAAACGTCGCTCTT--GA---TG--TC--AACGAAGCTCTTCTCGTCGAAATTCTTCGG 189 Query 23283 ATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATC 23342 || || || || | | ||||||||| ||||||||||||| |||| || | ||| Sbjct 188 GTCCACCACGGCAGAGTGGATGTTGGTGAACACCTTGAATTCGTCGGCGCAGCGCACATC 129 Query 23343 GTAGCCGTAGCTGGAAACACCGTAGGGAAT 23372 ||||||||||||||| |||||||||| ||| Sbjct 128 GTAGCCGTAGCTGGACACACCGTAGGAAAT 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896131644424000