Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq29027 268 3e-67 seq38457 122 3e-23 seq34527 109 2e-19 seq26949 104 7e-18 seq16638 87.8 6e-13 seq26948 80.6 9e-11 seq23889 80.6 9e-11 >seq29027 Length=2418 Score = 268 bits (296), Expect = 3e-67 Identities = 315/422 (75%), Gaps = 18/422 (4%) Strand=Plus/Plus Query 25864 TGCTGAGGCTGTTGAGGTTGGCCCCAACCGGTGTTACTTGCGCTACGATTACCGCCGCC- 25922 ||||| || || ||||| |||||||||||| |||| |||| || ||||||||| Sbjct 747 TGCTGCGGTTGCTGAGGCTGGCCCCAACCGTTGTTG-TTGCCCTG-----ACCGCCGCCT 800 Query 25923 GCTGCCGCCTT------CTGGAGCCTTGC--CGATCATCTGCATGGTTCCGCCAACGTTG 25974 |||| ||| || ||| | | | | | | |||||||||||| ||||| |||||| Sbjct 801 GCTGGCGCGTTACCGCCCTGCTGACGTCCACCCAGCATCTGCATGGTGCCGCCCACGTTG 860 Query 25975 ACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCC---CACTTGCGGGTTTTC 26031 || || | || |||||||| || || ||| ||| ||| || || ||||| | Sbjct 861 ACAACCACCTCCGTGGTGTAACGTTCCTGACCGCCCTGATCCTGCCATTTACGGGTGCGC 920 Query 26032 AGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCT 26091 || || || ||||| || ||||| |||||||| |||||| || ||||| | ||||| Sbjct 921 AGCTGGCCTTCAATATACACCTGAGAACCTTTACGCAGGTATTCCCCCGCCACTTCCGCC 980 Query 26092 ACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGC 26151 | ||||||||||||||||| || |||||||| || | ||||| ||||| ||||||||| Sbjct 981 AGTTTGCCAAACAGCACGACACGGTGCCATTCGGTGATCTCTTTGTTTTCACCGGTCTGC 1040 Query 26152 TTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGC 26211 || ||| |||||| || ||||| || | |||||||||||||| ||||| ||||| ||| Sbjct 1041 TTGTCGCGCCAGCTCTCAGAGGTAGCCAGCGTAATGTTGGCGACAGCGCCACCATTTGGC 1100 Query 26212 ATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCG 26271 |||||||| | || ||||| | ||||| || |||||||| || ||||| || ||||| Sbjct 1101 ATGTAACGTACTTCCGGATCCTGACCCAGATTCCCGACAAGAATCACTTTGTTAACGCCA 1160 Query 26272 CG 26273 || Sbjct 1161 CG 1162 >seq38457 Length=3703 Score = 122 bits (134), Expect = 3e-23 Identities = 98/116 (84%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 1696 GGTTCGACTCCAGGATTGGCCGCCA-AAGTGGGCATTAGATGAAAGCGGGTTTCCTCCCG 1754 ||||||| ||| | | | |||||| ||||| ||||||| || | ||||||||||||||| Sbjct 3588 GGTTCGAATCCTGCACTATCCGCCAGAAGTGCGCATTAGCTGTACGCGGGTTTCCTCCCG 3647 Query 1755 GATTTATCGCAATCATCACTGCCGCTGTC-AACAGCGTATGACGTTAAACCGCTCG 1809 |||||||||||| || ||||||||||||| ||| ||||| ||||| ||||||| || Sbjct 3648 GATTTATCGCAAACAGCACTGCCGCTGTCGAACGGCGTAAGACGTAAAACCGCCCG 3703 >seq34527 Length=8391 Score = 109 bits (120), Expect = 2e-19 Identities = 96/117 (82%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 1696 GGTTCGACTCCAGGATTGGCCGCCA-AAGTGGGCATTAGATGAAAGCGGGTTTCCTCCCG 1754 ||||||| ||| | | | || ||| ||||||||||||| || ||||||||||||||| Sbjct 3843 GGTTCGAATCCTGCAATATCCACCAGAAGTGGGCATTAGCTGTGCGCGGGTTTCCTCCCG 3902 Query 1755 GATTTATCGCAATCATCACTGCCGCTGTC-AACAGCGTATGACGTTAAACCGCTCGC 1810 |||||||||||| || ||||||| ||||| ||| || || ||||| ||||||| ||| Sbjct 3903 GATTTATCGCAAACAGCACTGCCACTGTCGAACGGCATAAGACGTAAAACCGCCCGC 3959 >seq26949 Length=277 Score = 104 bits (114), Expect = 7e-18 Identities = 130/178 (73%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 25938 AGCCTTGCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCG 25997 |||| ||| | ||||||||| |||||| || | ||||| ||||| || || || || Sbjct 178 AGCCGCGCCCAGCATCTGCATCGTTCCGTTTACATCAACCACGATTTCGGTCGTATAACG 119 Query 25998 CTCAACGCCGTCCTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTG 26054 |||| || || || ||| || || || ||| | |||| || || || || ||||| Sbjct 118 CTCAGTACCTTCGTTATCCTGCCATTTTCGTGTTCTGAGTTTGCCTTCGATATAGACCTG 59 Query 26055 TGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACG 26112 |||||| || |||||| ||||| || ||||| || | ||| |||||||| |||||| Sbjct 58 TGAACCCTTACGCAGGTATTCGCCGGCAATCTCAGCCAACTTTCCAAACAGAACGACG 1 >seq16638 Length=4153 Score = 87.8 bits (96), Expect = 6e-13 Identities = 150/217 (69%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 || ||||||| | ||| | || |||||| ||||| ||||||||||| || ||||| Sbjct 3937 CAACTGCATGTTGCCGTTGATGTCGACCACGATTTCGGTGGTGTAGCGATCCTGACCGTC 3996 Query 26010 CTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTT 26066 || || || |||||||| ||| ||||| | || ||||| || || || Sbjct 3997 CTGGCCCTGCCATTTGCGGGTACGCAGAGTGCCCTCGACATAGACCTGGGAGCCCTTGCG 4056 Query 26067 CAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGT 26126 | ||||||||| |||||||| || | || || | ||| ||||| |||||||| || Sbjct 4057 GATGTACTCGCCGGCGATCTCGGCGAGACGACCGAAGAACACCACGCGGTGCCATTCGGT 4116 Query 26127 CACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAG 26163 || | || | ||||||||||| || |||||| Sbjct 4117 GCGGTCCTGCTGCTGACCGGTCTGCTTGTCCTTCCAG 4153 >seq26948 Length=275 Score = 80.6 bits (88), Expect = 9e-11 Identities = 123/175 (70%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 25938 AGCCTTGCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCG 25997 |||| ||| | ||||||||| |||||| || | ||||| ||||| || || ||||| Sbjct 175 AGCCCCGCCCAGCATCTGCATCGTTCCGTTTACATCAACCACGATTTCGGTCGTATAGCG 116 Query 25998 CTCAACGCCGTCCTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTG 26054 | | || || | ||| || | || ||| |||||| || || || || ||||| Sbjct 115 TTTAGTACCTTCGCTATCCTGCCATTCCCGTGTTCTCAGTTTGCCTTCGATATAGACCTG 56 Query 26055 TGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACG 26109 |||||| || |||||| || || || || || || | ||| |||||||| ||| Sbjct 55 TGAACCCTTACGCAGGTATTCACCGGCAATTTCAGCCAGCTTTCCAAACAGAACG 1 >seq23889 Length=1023 Score = 80.6 bits (88), Expect = 9e-11 Identities = 94/127 (74%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 26147 TCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCAT 26206 ||||||| || ||||||||||| ||| || | ||| | ||||| || || ||| | Sbjct 1023 TCTGCTTGTCCTTCCAGCTTTCGCTGGTGGCCAGGGTGACGTTGGTCACCGCATTGCCGT 964 Query 26207 TAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTA 26266 | |||||||||||| | || |||||| || || ||||| ||||| |||||||| | Sbjct 963 TGGGCATGTAACGGGTTTCGGGATCGGCGCCGGCATTGCCGACGAGGATGACTTTATTGA 904 Query 26267 CGCCGCG 26273 |||| || Sbjct 903 CGCCACG 897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159570312229800