Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq31280 248 6e-61 seq36028 158 8e-34 seq125664 109 4e-19 seq41062 102 5e-17 seq50199 89.7 3e-13 >seq31280 Length=10079 Score = 248 bits (274), Expect = 6e-61 Identities = 1023/1602 (64%), Gaps = 20/1602 (1%) Strand=Plus/Minus Query 71158 CCAACACCTATTATGGGTGGTGTACGTACTCCAACAAGACAATTTAGTAGTTGTGTAAAG 71217 || || || || ||| || || ||||| ||||| | || || || ||||| | Sbjct 1739 CCGACGCCAATCATGTCGGGAGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTCCTG 1680 Query 71218 ATTGACAGTGGCGATAGCCTAGATTCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTAT 71277 ||||| ||||||| ||||| ||||| || || || | || || | ||||| || || Sbjct 1679 ATTGAATGTGGCGACAGCCTGGATTCCATCAACGCGACCTCCAGCGCTATTGTGAAATAC 1620 Query 71278 GTATCCAAACGTGCAGGTATCGGTATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCT 71337 || || |||| |||||||| ||||| || | || || || || | || || || Sbjct 1619 GTTTCACAACGCGCAGGTATTGGTATTAACGCGGGTCGTATCCGCGCGCTGGGCAGCCCG 1560 Query 71338 ATACGCAATGGTGAAGCAGTTCATACTGGTTTAATACCATTCTTAAAGCATTTCCAAACA 71397 || ||| |||||||| | ||||| |||| || || |||| ||||| ||||| ||| Sbjct 1559 ATTCGCGGCGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAGCACTTCCAGACA 1500 Query 71398 GCAGTCAAATCTTGCTCTCAGGGAGGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCT 71457 || || ||||| || || ||||| ||| | ||||| || || || || |||||| || Sbjct 1499 GCGGTGAAATCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGACGCTGTTCTATCCG 1440 Query 71458 ATGTGGCATTTAGAAGTTGAAAGCCTTTTAGTATTGAAAAATAACAAAGGTGTTGAAGAT 71517 ||||||||| | ||||| |||||||| ||||| ||||||| ||| ||||| |||| | Sbjct 1439 ATGTGGCATCTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAAGGT 1380 Query 71518 AACCGTGTACGTCATTTAGACTATGCTGTGCAATTCAATAAGCTTATGTACCAACGATTG 71577 ||||| |||||||| | ||||| | |||||| |||| || | |||||||| || || Sbjct 1379 AACCGCGTACGTCACATGGACTACGGTGTGCAGCTCAACAAAATGATGTACCAGCGCCTG 1320 Query 71578 ATTACAGGTGGCAATATTACATTGTTCTCACCTAATGCAGTTGAAGGTTTATATGACTCA 71637 | | || | | || || |||| || | || || | || || | Sbjct 1319 CTGAAGGGCGAGGACATCACGCTGTTTAGCCCGTCAGACGTACCTGGCCTGTACGATGCG 1260 Query 71638 TTCTTTGCCGACCAAGATAAGTTTGAAAAGTTATATACTGAAGCTGAAGGTAATCCTATG 71697 ||||||||||| || || | |||||| | || || || ||| || | | Sbjct 1259 TTCTTTGCCGATCAGGACGAATTTGAACGTCTTTACACCAAATACGAAC--AAGAC-AGC 1203 Query 71698 ATTATCCAAAAGTCAG----TAAAAGCTAGTGACTTATTTACATTGTTTGCACAAGAGCG 71753 | || | ||| ||| | ||||| || | || | || | || || || Sbjct 1202 AGCATTCGTAAG-CAGCGTGTGAAAGCGGTAGATCTGTTCTCGCTGATGATGCAGGAACG 1144 Query 71754 AGCAGGTACAGGTCGTATCTATCTTCAAAACGTAGATCACTGTAATACCAATAGCCCATT 71813 || ||| || || ||||| | || ||||| || ||||| || || | ||||| || Sbjct 1143 CGCCTCTACCGGCCGCATCTACATCCAGAACGTTGACCACTGCAACACACACAGCCCGTT 1084 Query 71814 TATTGC-AGAAGTTGCCCCTATTCGTATGAGTAACTTATGCCTTGAAATTGCATTACCAA 71872 | || || | |||| || | || | ||| | || || |||||||| | |||| Sbjct 1083 TGACGCCAGTA-TTGCGCCAGTGCGCCAGTCGAACCTGTGTCTGGAAATTGCGCTGCCAA 1025 Query 71873 CTGAACCTATGCAGGATATTAATAAGCCTGAAGGTGAAATTGCATTATGTACATTAGCTG 71932 || |||| | | || | || | | ||||| ||||| | ||||| | | | Sbjct 1024 CTAAACCGCTCAATGACGTCAACGACGAAAACGGTGAGATTGCGCTCTGTACGCTGTCAG 965 Query 71933 CATTCAATCTTGGTGCCATTAA-AGATTTAGGTCG-TATGGAAAAATTATCCGAATTAGT 71990 |||| || |||||||| ||| | || | || || | ||||| | | || | | Sbjct 964 CATTTAACCTTGGTGCGATTGACAGCCT--GGACGATCTGGAAGAGCTGGCCACGCTGGC 907 Query 71991 TATTAGAGCATTAGATGCTTTACTTGATTACCAAGATTATCCAATACTAGCTGCTGAAAA 72050 | | | || | ||||| | || ||||| || ||||| || || | || || | Sbjct 906 TGTACGCGCGCTGGATGCACTGCTGGATTATCAGGATTACCCGATTCCGGCCGCGCAGCG 847 Query 72051 TGCTACCAAGCGAAGACGTACTTTAGGTGTTGGCATTATTAATTATGCTCATCACTTAGC 72110 | | | | | | | ||||| | || ||||| | ||||| | |||| | || | || Sbjct 846 GGGTGCGATGGGTCGTCGTACGCTGGGCATTGGCGTCATTAACTTTGCTTACTACCTGGC 787 Query 72111 TAAAAATGGTGTTAAATATTCTGATGGCAGTGCCAACAATTTAACTCATGAACTCTTCGA 72170 || | || || || || || ||||| || || | || || || ||| || Sbjct 786 GAAGCACGGCGTGCGCTACTCCGACGGCAGCGCGAATGGCCTGACGCACAAAACCTTTGA 727 Query 72171 AAGTTTTCAGTATTACCTATTGAAAGCAAGTTGTGATTTAGCCAAAGAACAAGGCGCTTG 72230 | ||||||| ||||| ||||||| ||| | || ||||| |||||||| || Sbjct 726 AGCCATTCAGTACTACCTGCTGAAAGCCTCAAATGAGCTGGCTAAAGAGCAAGGCGCCTG 667 Query 72231 TCCTGCATTCCATGAGACAACTTATTCACAGGGTATATTACCTATTGACCGCTATAATAA 72290 || ||| |||| || || ||| ||||||| | | || ||||| ||| || || Sbjct 666 CCCGTGGTTCAATGAAACCACCTATGCACAGGGCGTCCTGCCGATTGATACCTACAAGAA 607 Query 72291 GTCAGTAGATGGTATTCATAGTGAAGAGTTACATCTTCCGTGGGAGCAATTGAGAGAAGA 72350 | |||| ||| | || | | || || ||||| || | || | Sbjct 606 AGATCTGGATGCGATTTGCAACGAGCCGCTGCACCTGGACTGGGAAACCCTGCGCGAGCA 547 Query 72351 TATTTTGAAATACGGTTTACGTAATTCTACTGTATCCTCATTGATGCCAAGTGAAACAAG 72410 ||| | |||| | || || || || | || | ||||||| |||||| Sbjct 546 GATTAAAACCCACGGCCTGCGCAACTCGACGCTTTCTGCCCTGATGCCGTCTGAAACCTC 487 Query 72411 TTCTCAGGTATCTAATGCAACAAATGGTATTGAACCACCTCGCGGTTTAATGAGCATTAA 72470 || ||| | || || || || || ||||| ||||| || ||||| || || ||||| Sbjct 486 GTCGCAGATTTCAAACGCCACCAACGGTATCGAACCGCCGCGCGGCCATATCAGTATTAA 427 Query 72471 AGCAAGTAAAGATGGTATCTTGAAGCAAGTAGTACCTCATATTG---GTACAATGGCTAA 72527 ||| |||||| |||||| || || || || || | || || | | | Sbjct 426 AGCGTCTAAAGACGGTATCCTGCGTCAGGTGGTGCCGGAATATGAGCGTCTTAAAG---A 370 Query 72528 TGACTATGAATTGTTGTGGAATATTCCAAGCAATAATGGCTATATTGAATTAGTTGCAAT 72587 | | || ||| || ||||| |||| || |||| ||||||| | || | |||| | Sbjct 369 TCAGTACGAACTGCTGTGGGATATGCCGTCCAATGATGGCTACCTGCAACTGGTTGGCGT 310 Query 72588 CATGCAAAAGTTTGTCGATCAGGCAATCTCTGCGAACACAAATTATGACCCTACTAAATT 72647 ||||| || || |||||||||| || || | || || || || || || | || Sbjct 309 AATGCAGAAATTCATCGATCAGGCGATTTCGTCAAATACCAACTACGATCCGTCGCGCTT 250 Query 72648 CGCAAATGGCAAAGTCCCAGTTAAGCAAATTCTTAAAGATTTAATACGAGGCTATAAGCT 72707 | | ||||||||||| || | |||||| | || |||||| | | | ||| ||| | Sbjct 249 CCCGAATGGCAAAGTGCCGATGAAGCAACTGCTGAAAGATCTGCTGACCGCCTACAAGTT 190 Query 72708 TGGTGTTAAAACATTCTATTACCATAACACCCGTGATGGTGC 72749 ||| || ||||| |||| ||||| ||||||||||||||||| Sbjct 189 TGGCGTGAAAACGCTCTACTACCAAAACACCCGTGATGGTGC 148 >seq36028 Length=2231 Score = 158 bits (174), Expect = 8e-34 Identities = 532/811 (66%), Gaps = 28/811 (3%) Strand=Plus/Plus Query 72971 TTCTTTTGGCGACCTGATGAAATAGATGTATCAAAAGACCGTTCTGATTGGCAAAAAATG 73030 ||||| ||||| ||||| ||| | ||||| ||| || || || | || || Sbjct 12 TTCTTCTGGCGTCCTGAAGAAGTCGATGTCTCACGCGATCGCATCGACTACCAGGCCCTG 71 Query 73031 ACTGACTCTGAAAAGCATATTTTCATATCAAATCTTAAATACCAAACATTGCTTGA-TAG 73089 | || |||||||||||| ||||| || || |||||||| || || || || | | Sbjct 72 CCCGATCATGAAAAGCATATCTTCATCAGCAACCTGAAATACCAGACGTTACTGGACTCG 131 Query 73090 ---CATGGCTGCACGTTCTGTTAATATGGTATTACTTCCACTTGTATCTTTACCTGAAGT 73146 || || ||| | | || ||| | | || || || | || | || ||| | Sbjct 132 ATTCAGGGACGCAGC--CCG--AACGTGGCACTGCTGCCGCTGATCTCGATTCCGGAACT 187 Query 73147 TGAAACATGGATTGAAACATGGGCATTTAGTGAAACTATTCACTCTCGCTCATATACTCA 73206 ||||| ||||| ||||| ||||| || ||||| || ||||||||||| || || || Sbjct 188 GGAAACCTGGATAGAAACCTGGGCGTTCTCCGAAACGATCCACTCTCGCTCGTACACCCA 247 Query 73207 TATCTTGCGTAACCTTTTCGTAGATCCAAGTGAAGTATTTGATGATATTACAATTAACCC 73266 ||| | || ||| | | ||||| || || ||||| ||||| | |||| Sbjct 248 CATCATTCGCAACATCGTGAACGATCCGTCTGTGGTGTTTGACGATATCGTCACCAACCA 307 Query 73267 TGAAATATTAAAACGTGCTGAAAGTATCGCCAAATACTTTGATGATGTGATACTGACAAC 73326 | || | ||||| | ||| | || |||| ||||| |||| || || Sbjct 308 GCAGATTCTGGCGCGTGCGCAGGACATCTCTAAGTACTACGATGACCTGATTGAGATGAC 367 Query 73327 TCAGTTCATTCAATCTCAAGGTGAAGGTACTTATCAGGTCAATGGTGAAGAGTATGTAGT 73386 | | | | || | | ||||||||||| |||||||||||||| ||| || || Sbjct 368 TAACTACTGGCATTTGCTGGGTGAAGGTACGCATCAGGTCAATGGT-AAGTCCAT-TACG 425 Query 73387 CTCAAAG--CGTAAGCTTAAAGAGCGACTTTATCTT-GCCGTTTGTGCTGTCAATGCCTT 73443 | || | || ||| ||| ||| | ||| || ||| || || |||||||| | Sbjct 426 GTTAATGTGCGCGCGCTGAAAAAGCAGTTGTATATTTGCCTGATGAGC-GTCAATGCGCT 484 Query 73444 AGAAGCTATCCGCTTTTACGTAAGTTTCGCATGTTCATTTGCTTTTGCAGAACGTGAGCT 73503 ||||| |||||||| ||||| || || || || || ||||| ||||| || || || || Sbjct 485 GGAAGCGATCCGCTTCTACGTCAGCTTTGCCTGCTCTTTTGCGTTTGCTGAGCGAGAACT 544 Query 73504 ACTTGAAGGTAATGCCAAGATTATTAAACTAATCGCCCGTGATGAAGCCTTGCACTTAAC 73563 | ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 545 GATGGAAGGCAACGCCAAAATCATCAAGCTGATTGCACGCGACGAAGCTCTGCACCTGAC 604 Query 73564 TGGTACTCAGATGATTCTGAATAACTG--GCGAACTGGCAAGGATGATCCTGAAATGCAA 73621 || || ||| || |||||| ||| ||| || || | || |||||||||||| || Sbjct 605 CGGCACCCAGCACATGCTGAAT--CTGCTGCGCACCGGTGAAGACGATCCTGAAATGAAA 662 Query 73622 GAGATT---GCAGAAGACCTTAAAGATGTAAGTCTTAAGATCTTTATGGATGTTG--TTG 73676 || ||| || ||| || | |||| || | | || | |||| | | | | || Sbjct 663 GAAATTGCCGCCGAATGCCGTGAAGA-GT--GCTTCGAGCTGTTTAAGAAAGCGGCCTTA 719 Query 73677 AAGAAGAAAAGCAATGGGCAAAATATCTATTCAAAGATGGGTCAATGATCGGTCTTAATG 73736 || ||||| | |||||| | || || |||| | || || ||||||||||| || Sbjct 720 CAGGAGAAA--GAGTGGGCAGATTACCTGTTCAGCGGCGGCTCCATGATCGGTCTGAACA 777 Query 73737 AAGAAATACTTTGCCAGTACGTTGAGTACAT 73767 |||| || || |||||||| | || ||||| Sbjct 778 AAGATATCCTGTGCCAGTATATCGAATACAT 808 >seq125664 Length=398 Score = 109 bits (120), Expect = 4e-19 Identities = 225/326 (69%), Gaps = 9/326 (3%) Strand=Plus/Minus Query 72427 GCAACAAATGGTATTGAACCACCTCGCGGTTTAATGAGCATTAAAGCAAGTAAAGATGGT 72486 || || |||||||||||||| || | || || || ||||| ||||| ||||| || Sbjct 397 GCTACTAATGGTATTGAACCGCCAAGAGGATTCATTAGCATCAAAGCCTC-AAAGACGGC 339 Query 72487 ATCTTGAAGCAAGTAGTACCTCATATTGGTACAATGGCTAATGAC--TATGAATTGTTGT 72544 || || || |||||||| || | || || || | ||| || |||||||| | | Sbjct 338 ATGTTAAAACAAGTAGTTCCAGA-ATA--TAAAA-GTTAAATCACAGTATGAATTACTTT 283 Query 72545 GGAATATTCCAAGCAATAATGGCTATATTGAATTAGTTGCAATCATGCAAAAGTTTGTCG 72604 || |||| |||| |||| ||| ||| | || | ||||| || |||||||||||| | | Sbjct 282 GGGATATACCAAATAATACTGGATATTTAGAGCTGGTTGCTATTATGCAAAAGTTTATTG 223 Query 72605 ATCAGGCAATCTCTGCGAACACAAATTATGACCCTACTAAATTCGCAAATGGCAAAGTCC 72664 |||| | || || | ||||| |||||||| || | || |||||| ||| | | Sbjct 222 ATCAATCTATTTCAGTTAACACTAATTATGATCCAAAACGTTTTACAAATGAAAAAATAC 163 Query 72665 CAGTTAAGCAAATTCTTAAAGATTTAATACGAGGC-TATAAGCTTGGTGTTAAAACATTC 72723 || | || ||| || | | |||||| | | ||| ||||| | || | ||||| || Sbjct 162 CAATGAAACAACTTTTATATGATTTACT-TGTGGCATATAAATTAGGAATAAAAACTTTA 104 Query 72724 TATTACCATAACACCCGTGATGGTGC 72749 || || || ||||| | ||||| || Sbjct 103 TACTATCAAAACACTAGAGATGGCGC 78 >seq41062 Length=2478 Score = 102 bits (112), Expect = 5e-17 Identities = 255/379 (67%), Gaps = 10/379 (3%) Strand=Plus/Plus Query 72939 CATTTGAAAAATTAATAGAAAAACAATTGAGCTTCTTTTGGCGACCTGATGAAATAGATG 72998 ||||||||||| | | |||| || || || || ||||| || | ||| | ||| Sbjct 351 CATTTGAAAAAATGACTGAAAGTCATCAAAGTTTTTTCTGGCGTCCACAAGAAGTTGATT 410 Query 72999 TATCAAAAGACCGTTCTGATTGGCAAAAAATGACTGACTC-TGAAAAGCATATTTTCATA 73057 |||||||||||||| ||||| || | | || | || ||| ||||||||||||| Sbjct 411 TATCAAAAGACCGTATTGATTTTAAATCACT-ACAGGATCATGAGAAGCATATTTTCACT 469 Query 73058 TCAAATCTTAAATACCAAACATTGCTTGATAGCATGGCTGCACGTTCTGTT---AATATG 73114 || ||| | ||| |||| | |||||| || | | | || || || | Sbjct 470 TCTAATTTGAAACGTCAAATTCTTCTTGATT-CA--GTTCAAGGTCGTGGACCAAACCTA 526 Query 73115 GTATTACTTCCACTTGTATCTTTACCTGAAGTTGAAACATGGATTGAAACATGGGCATTT 73174 | | || | ||| ||| || ||||||||| ||||| | | |||||||| ||||||||| Sbjct 527 GCACTATTACCAATTGCTTCATTACCTGAAATTGAATCTTTCATTGAAACTTGGGCATTT 586 Query 73175 AGTGAAACTATTCACTCTCGCTCATATACTCATATCTTGCGTAACCTTT-TCGTAGATCC 73233 ||||| |||| || || ||||| ||||| | |||||| | | || | |||| Sbjct 587 TTTGAAAGCGTTCATAGCCGTTCCTATACACATATTATTCGTAACGTGTATCCGA-ATCC 645 Query 73234 AAGTGAAGTATTTGATGATATTACAATTAACCCTGAAATATTAAAACGTGCTGAAAGTAT 73293 | |||||||||||| ||| | || |||||||| | | |||| ||| ||| Sbjct 646 ATCGGAAGTATTTGATACTATGTTAGATATTCCTGAAATTACATCATGTGCAGAAGATAT 705 Query 73294 CGCCAAATACTTTGATGAT 73312 || || |||| ||||||| Sbjct 706 TGCAAAGTACTATGATGAT 724 >seq50199 Length=417 Score = 89.7 bits (98), Expect = 3e-13 Identities = 220/330 (67%), Gaps = 14/330 (4%) Strand=Plus/Plus Query 71560 CTTATGTACCAACGATTGATTACAGGTGGCAATATTACATTGTTCTCACCTAATGCAGTT 71619 ||| | |||||| |||| |||| ||||| || || | |||||| ||| || | | Sbjct 29 CTTTTCTACCAAAGATTAATTAAAGGTGAAAAAATAAGCTTGTTCAGCCCTGGTGAAATG 88 Query 71620 GAA------GGTTTATATGACTCATTCTTTGCCGACCAAGATAAGTTTGAAAAGTTATAT 71673 | | ||| | || | ||||||||| || |||||||||||||||||| | ||| Sbjct 89 GTAACTCCTGGTCTTTACAATGCATTCTTTGAAGATCAAGATAAGTTTGAAAAGCTTTAT 148 Query 71674 ACTGAAGCTGAAGGTAATCCTATGATTATCCAAAAGTCAGTAAAAGCT---AGTGACTTA 71730 ||| || |||| ||| | | |||| | || ||||| ||| || || ||| Sbjct 149 ACTCAATATGAA---AATGATGACAGTATCAAGAAAAGAGTAATTGCTGCAAGAGAATTA 205 Query 71731 TT-TACATTGTTTGCACAAGAGCGAGCAGGTACAGGTCGTATCTATCTTCAAAACGTAGA 71789 || | || | ||| | || ||||| || || ||||| ||| | || ||||| || Sbjct 206 TTCTCCAATCTTTTGA-TTGAAAGAGCAAACACCGGACGTATTTATATCCAGAACGTTGA 264 Query 71790 TCACTGTAATACCAATAGCCCATTTATTGCAGAAGTTGCCCCTATTCGTATGAGTAACTT 71849 || |||||||| | || | || | | | || || ||||||||| ||| || | Sbjct 265 CCATTGTAATACGCACAGTGCGTTCGATCCTGCTGTGGCTCCTATTCGTCAGAGCAATCT 324 Query 71850 ATGCCTTGAAATTGCATTACCAACTGAACC 71879 ||| | |||||| |||| |||||| |||| Sbjct 325 TTGCATGGAAATTACATTGCCAACTAAACC 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335137344915100