Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_018280.1 Length=38889 Score E Sequences producing significant alignments: (Bits) Value seq35356 159 9e-35 seq72771 147 5e-31 seq28764 107 5e-19 seq60984 82.4 2e-11 >seq35356 Length=5999 Score = 159 bits (176), Expect = 9e-35 Identities = 335/495 (68%), Gaps = 31/495 (6%) Strand=Plus/Plus Query 32599 TCCATATTACGACGAGCAGTTTCAAGCATTGCATTCAGGATAGGCTCAAGGAACACACGT 32658 |||||||| ||||||| ||||||||||||||||| || | ||| || | | || | Sbjct 5433 TCCATATTGCGACGAGAGGTTTCAAGCATTGCATTAAGAACAGGTTCTACCATTTCAATT 5492 Query 32659 TCAAAGTGGGCAGTCTTGTGCTGGAAGATACGACCAGCTGCAGTCATCAGCTGACCTACT 32718 ||||||| || | |||| | ||||| ||||||||| | ||| || ||||| ||| Sbjct 5493 TCAAAGTTGGTAATCTTCTCTTGGAAAATACGACCACCAGCATTCTGAAGCTGTTGAACT 5552 Query 32719 TCAAAGGCTGTCTTCTCACCTGCACTACGAATACCCATAGCCTCACGAGGAGCACCTGCC 32778 ||||| || || ||||| || | | |||||| |||||||| ||||||||||||||||| Sbjct 5553 TCAAAAGCAGTTTTCTCTCCAGGAGAACGAATCCCCATAGCTTCACGAGGAGCACCTGCG 5612 Query 32779 ATCATCTCCATCTTAGCTTCAATGTTCTGTATCTGGAAGTCTGCGTTCAAAGCAG-TACT 32837 ||| |||| | | ||||| || ||| | | |||| ||||| ||| Sbjct 5613 TACATTTCCA-------TACGCTGTTC--TAGCTGAGCGATTTCGTTGTTAGCAGACACT 5663 Query 32838 A------TCAGG-----AACAAGGTAACCTACA------TCGCCTTCATCACCAAGGTAG 32880 | | ||| | |||| | |||| | || ||||| ||| |||| Sbjct 5664 ACGCCATTGAGGTTCTTACCAAGCTCTGTTACAGCAGATTGCCCCACATCATCAATGTAG 5723 Query 32881 ATACGAGCATTAGGTTCAAAGTCGAAGTCTTCTACGTCACCCCTAATCTTAAGAACAGGG 32940 || || | || || | || || || || || || ||| || ||| | || | Sbjct 5724 ATGCGGCCTCCTGGCTCGTAATCAAAATCCTCGACATCTCCCTGAA--TTACAAGCATTG 5781 Query 32941 TAAGCA-ATCT-GGTCGAACACATCAGCCTTGAGGTTTTCAAGGTGGTCGATGCGATACT 32998 | ||| | || ||| | |||| || ||||||||||| |||||||| || ||||| | Sbjct 5782 GATGCACAGCTAAGTCCATAGCATCCGCTTTGAGGTTTTCTAGGTGGTCAATACGATATT 5841 Query 32999 GCATACCTACGAGGTTGTCGAGTGGCCCCATGCTGTAAAGGTTGTCAGGACGATCACGCC 33058 |||| || || | ||| || || |||||||| | |||||||||| ||| ||||| Sbjct 5842 GCATTCCCACCAAGTTATCCAGAGGCCCCATAGCCCAGAGGTTGTCAGTACGGAAACGCC 5901 Query 33059 AGCCCACATGGAAGA 33073 |||| |||||||||| Sbjct 5902 AGCCTACATGGAAGA 5916 >seq72771 Length=649 Score = 147 bits (162), Expect = 5e-31 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 32599 TCCATATTACGACGAGCAGTTTCAAGCATTGCATTCAGGATAGGCTCAAGGAACACACGT 32658 ||||||||||| ||||||||||| ||||||||||| || | ||| |||| | || | Sbjct 289 TCCATATTACGTCGAGCAGTTTCCAGCATTGCATTAAGAACAGGTTCAACCATTTCAATT 230 Query 32659 TCAAAGTGGGCAGTCTTGTGCTGGAAGATACGACCAGCTGCAGTCATCAGCTGACCTACT 32718 ||||||| | | || | ||||| ||||||||| |||| || ||||| ||| Sbjct 229 TCAAAGTTTGTTATTTTCTCTTGGAAAATACGACCACCTGCGTTCTGTAGCTGTTGAACT 170 Query 32719 TCAAAGGCTGTCTTCTCACCTGCACTACGAATACCCATAGCCTCACGAGGAGCACCTGCC 32778 || || |||||||||||||| | | |||||||||||| || ||||||||||||||||| Sbjct 169 TCGAATGCTGTCTTCTCACCAGGAGAACGAATACCCATCGCTTCACGAGGAGCACCTGCA 110 Query 32779 ATCATCTCCAT 32789 ||||||||| Sbjct 109 TACATCTCCAT 99 >seq28764 Length=21750 Score = 107 bits (118), Expect = 5e-19 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 33721 GGGAACAAAGCAGCAAAGTAGTTTGCGTGAAGGTTATCAGCAATCTGAGTAAGCTTAGGA 33780 |||||||| |||| | |||||| | || | |||||| ||||||| ||||||||| Sbjct 158 GGGAACAATGCAGAGATGTAGTTAGAATGTAAGTTATCCCGAATCTGACAAAGCTTAGGG 217 Query 33781 GTAGTTGTTGAGTTAGACCAAGGTAGTTTGTTGTTGGAGGTAGTCCGAGTATCCGTAGCA 33840 | ||||| ||||| |||||| ||| | ||| ||||| ||| ||||||||| Sbjct 218 ATTGTTGTGGAGTTCTTCCAAGGAAGTGATTGGTTACTTGTAGTGGAAGTGTCCGTAGCA 277 Query 33841 TAGATGTAGTTACGAAGCTCTTTCCACTCTTTAATCTTACCA 33882 | || || |||||||| ||||||||||| | |||||||||| Sbjct 278 AAAATATAATTACGAAGTTCTTTCCACTCATCAATCTTACCA 319 >seq60984 Length=908 Score = 82.4 bits (90), Expect = 2e-11 Identities = 116/159 (73%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 33721 GGGAACAAAGCAGCAAAG-TAGTTTGCGTGAAGGTTATCAGCAATCTGAGTAAGCTTAGG 33779 ||||||| || ||| || ||||| | ||| ||||| || |||||| |||||||| Sbjct 420 GGGAACAGAG-AGCTGAGATAGTTAGAGTGGAGGTTGTCTCTAATCTGGCATAGCTTAGG 478 Query 33780 AGTAGTTGTTGAGTTAGACCAAGGTAGTTTGTTGTTGGAGGTAGTCCGAGTATCCGTAGC 33839 || || || ||||| |||||||||| | |||||| || || |||||| | Sbjct 479 -GTCGTGGTAGAGTTCTTCCAAGGTAGTGCGGAGTTGGACGTGGTGGAAGTATCA----C 533 Query 33840 ATAGATGTAGTTACGAAGCTCTTTCCACTCTTTAATCTT 33878 | |||| ||||| | ||||||||||||||| | |||||| Sbjct 534 AAAGATATAGTTCCTAAGCTCTTTCCACTCCTCAATCTT 572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124130833158600