Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq62931 174 6e-39 seq26088 123 9e-24 >seq62931 Length=753 Score = 174 bits (192), Expect = 6e-39 Identities = 303/435 (70%), Gaps = 13/435 (3%) Strand=Plus/Minus Query 15956 CGGACTACGGGAACGACCACACCATCGCCGGTCAGGTGGTACGCCTCGTTGTAGTTCTCA 16015 || || || || || |||| || ||||||||||||||||| ||||| |||||||| Sbjct 617 CGAACGACCGGCACCGCCACCCCGTCGCCGGTCAGGTGGTATGCCTCATTGTAGTTGCGC 558 Query 16016 GGGAGCTTGTAATCGTCAGGCAAG-CCCATGAGGCGCGCCGTTTCGCGACTAGATATCAG 16074 || |||||||||||||| | | || ||||| ||||||||||| ||||| || ||||| Sbjct 557 GGCAGCTTGTAATCGTC-GCCTAGACCCATCAGGCGCGCCGTCTCGCGTGCCGAGATCAG 499 Query 16075 GCGAGAGCGAACCTT---GTCA-CGTTGCACAACTAAGATTGACTGCCGACTTGAACCGC 16130 || || || ||||| | || || || || | ||| || || || || |||| Sbjct 498 TCGTGACCGCACCTTTGGGCCATCGATG----ACGACGATCACTTGGCGGCTGGAGCCGC 443 Query 16131 CAGCCGGAGTGCGGAGACAACCCGAGATATCATCAAATCGAATTTCCGCGCGCTGCACCT 16190 | || || ||||| || || || || | ||||| || |||| ||| ||||| |||| || Sbjct 442 CCGCGGGCGTGCGCAGGCAGCCGGACACGTCATCGAAGCGAACTTCGGCGCGTTGCATCT 383 Query 16191 TGCGTTTGAATTCGTCGAGACGTGTGCGCTTGTAAATTCCGCCAACCATGCGCTTGGCCG 16250 | |||| | || | || |||||||| || | ||||| |||||||| | | | Sbjct 382 T---TTTGCCGCCCTCAACTCGCGTGCGCTTATAGACGCCGCCGACCATGCGGTGCCCTG 326 Query 16251 ATTGCTTCGCGAGGTTGACCTTGGCCCGGTTGATATCGCTCATCATTCGAAGAAGCCGCG 16310 |||| ||| ||| |||||||| ||||||| |||||| | || ||| || Sbjct 325 CCCGCTTGGCGGCGTTCACCTTGGCGAGGTTGATGGGCGACATCATGCCGAGGAGCTGCT 266 Query 16311 CCGTCTCTTCGCGGGTGTGCCACTCGACGCCTTGCGGATTCTCTTCAATGATATCGGCAA 16370 ||| || | | |||||||| |||| ||| |||||||| || || ||| | Sbjct 265 GCGTTTCCGCAGGCGTGTGCCAAGACACGCTCGACGGGTTCTCTTCGATCATGCTGGCGA 206 Query 16371 AGGTCGTGTTGCGTC 16385 | ||||||||||||| Sbjct 205 ACGTCGTGTTGCGTC 191 >seq26088 Length=506 Score = 123 bits (136), Expect = 9e-24 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 17997 AAGATGGGGATCATCGGCAAGAGCCAGGAACGCGATCGGCGTCCGACCTTCGAAGAACTC 18056 |||||||| || || |||||||| |||| ||||||||||| ||| || | || || Sbjct 270 AAGATGGGCATGGTCAGCAAGAGCAAGGAGCGCGATCGGCGGCCGGAGCTCCAGGAGCTG 329 Query 18057 GACAAGCTGATGACGCATTTCCAGGAGCGCAACCACCGCCGCCCGTCGTCGAACCCGATG 18116 ||| ||||||| ||||||| ||| | | ||||| ||| |||||| | ||| Sbjct 330 GACCTGCTGATGGAGCATTTCTTCGAGATGCAGCGGCGCCGGCCGGCGTCGATCAACATG 389 Query 18117 CACTACGTCATCGGCTTTGCCATCTTCTCGACGCGGCGCATGGACGAGATCGCGCGCATC 18176 | | | || |||| || ||||||||||| || || ||| ||| |||||| |||| ||| Sbjct 390 CCCAAGGTGATCGCTTTCGCCATCTTCTCCACCCGCCGCCAGGAGGAGATCACGCGGATC 449 Query 18177 GCGTGGGACGACTACGAC-AAGGAAGGCAAGCGAGTCTTGGTCCGCGATATGAAGAA 18232 ||||||||| ||| || | |||| ||| || |||| ||||| |||||||| Sbjct 450 CGCTGGGACGACCTGGACGAACGCCGGCAGGCG-GTGCTGGTGCGCGACATGAAGAA 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185399085112200