Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq16638 138 4e-28 seq40890 118 4e-22 seq45329 91.5 6e-14 seq23889 91.5 6e-14 seq29027 87.8 7e-13 seq26088 86.0 2e-12 seq99053 84.2 9e-12 seq69341 84.2 9e-12 >seq16638 Length=4153 Score = 138 bits (152), Expect = 4e-28 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 10081 AAGGACAAGGCGAGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTC 10140 ||||||||| || ||| || | |||| ||||||||||||||||| |||||| Sbjct 4149 AAGGACAAGCAGACCGGTCAGCAGCAGGACCGCACCGAATGGCACCGCGTGGTGTTCTTC 4090 Query 10141 GGCCGCCTCGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAG 10200 || || ||||||||||||| || ||||||| | ||||||||| | | |||||| ||||| Sbjct 4089 GGTCGTCTCGCCGAGATCGCCGGCGAGTACATCCGCAAGGGCTCCCAGGTCTATGTCGAG 4030 Query 10201 GGCCGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAG 10260 ||| | || || || || ||||||| | | ||| |||||||||||||| ||||| Sbjct 4029 GGCACTCTGCGTACCCGCAAATGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAA 3970 Query 10261 ATCGTCGCCGA 10271 ||||| | ||| Sbjct 3969 ATCGTGGTCGA 3959 >seq40890 Length=365 Score = 118 bits (130), Expect = 4e-22 Identities = 173/240 (72%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 9974 TCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGA 10033 ||||||||||||||||||||||||| |||||| ||| || || ||| ||| || | Sbjct 238 TCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGG 179 Query 10034 GCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTA-CAAGGACAAGGCG 10092 |||| || ||| || ||| |||| || || ||| | || |||||| ||| Sbjct 178 CCGGCATGGCCATCACCCGGATCAGCCTGGCCACCACC-AGCGTGCGCAAGGATC--GCG 122 Query 10093 AGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCC 10152 | |||| | | ||||| ||||| |||||||||||| |||||||| || | | Sbjct 121 A-CGGCAACCAGCAGGAACGCACCGAGTGGCACCGCGTCGTGTTCTTCGGAAAGCTTGGC 63 Query 10153 GAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGC 10212 ||||||| || ||||||||||||||| ||| |||||||| |||| ||| |||||| Sbjct 62 GAGATCGCCGGCGAGTACCTGCGCAAAGGCAGCTCGGTCTACGTCGAAGGCTCGATCCGC 3 >seq45329 Length=597 Score = 91.5 bits (100), Expect = 6e-14 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 |||||| ||||||||||||||||||||| ||||||||| || |||||||| ||| | || Sbjct 122 CGTCAATAAAGTCATCCTCGTCGGCAATGCCGGCGCCGATCCCGAAACCCGTTACATGCC 63 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAG 10089 | |||| | || | ||||| || ||| || || | ||| ||| ||||||||| Sbjct 62 CAACGGCAATGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAG 5 >seq23889 Length=1023 Score = 91.5 bits (100), Expect = 6e-14 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 |||||| ||||||||||||||||||||| ||||||||| || |||||||| ||| | || Sbjct 902 CGTCAATAAAGTCATCCTCGTCGGCAATGCCGGCGCCGATCCCGAAACCCGTTACATGCC 961 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAG 10089 | |||| | || | ||||| || ||| || || | ||| ||| ||||||||| Sbjct 962 CAACGGCAATGCGGTGACCAACGTCACCCTGGCCACCAGCGAAAGCTGGAAGGACAAG 1019 >seq29027 Length=2418 Score = 87.8 bits (96), Expect = 7e-13 Identities = 195/290 (67%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 ||| |||||||| || || ||||| ||||| || || |||||| || ||| | || Sbjct 1157 CGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCC 1098 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGC 10091 | || | ||| || ||||||| || ||||| | || ||| |||||| Sbjct 1097 AAATGGTGGCGCTGTCGCCAACATTACGCTGGCTACCTCTGAGAGCTGGCGCGACAAGCA 1038 Query 10092 GAGCGGCGAGATGAAGGA-ATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCG 10150 || ||| || | || || ||| |||||||||||||| ||| | || ||| || | Sbjct 1037 GACCGGTGAAAACAAAGAGATC-ACCGAATGGCACCGTGTCGTGCTGTTTGGCAAACTGG 979 Query 10151 CCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCC 10210 | || | | | || |||||||| || || | | ||| || || || |||| | | Sbjct 978 CGGAAGTGGCGGGGGAATACCTGCGTAAAGGTTCTCAGGTGTATATTGAAGGCCAGCTGC 919 Query 10211 GCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAG 10260 |||| || || ||||||||| | | ||| ||||| || ||||| || ||| Sbjct 918 GCACCCGTAAATGGCAGGATCAGGGCGGTCAGGAACGTTACACCACGGAG 869 >seq26088 Length=506 Score = 86.0 bits (94), Expect = 2e-12 Identities = 200/298 (67%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 2614 CCCGCCTGGGGCGCCAAGCTCGACCCGCAGGCGATGGAGCACGCGAAGGCGGTTTGCTG- 2672 || ||||| ||| | || |||||||||| || |||| | || || | || || Sbjct 210 CCGGCCTGAGGCTACGAGATCGACCCGCACGCCATGGCCGATGCTC--GCCGGGTGTTGA 267 Query 2673 -GAAGATGGGGCTGATCGACCGGGCCGAGGAACGCACTCGCGTGCCGACGATGGACGAGC 2731 ||||||||| || || | | | |||| ||| ||| |||| | | | |||| Sbjct 268 AGAAGATGGGCATGGTCAGCAAGAGCAAGGAGCGCGATCGGCGGCCGGAGCTCCAGGAGC 327 Query 2732 TCGAGAAGCTGATGGTCTACTTCTACGACATGGCGCGGCGCCGGAAGTGGGCGACGCCGA 2791 | || |||||||| | |||| ||| ||| |||||||||| | | ||| | Sbjct 328 TGGACCTGCTGATGGAGCATTTCTTCGAGATGCAGCGGCGCCGGCCGGCGTCGATCAACA 387 Query 2792 TGGTCAAGATCATCGCGTTCGCGATCTTCTCGACGCGGCGGCAGGAGGAGATCATCAGGA 2851 || |||| | ||||| ||||| |||||||| || || || ||||||||||||| ||| Sbjct 388 TGCCCAAGGTGATCGCTTTCGCCATCTTCTCCACCCGCCGCCAGGAGGAGATCACGCGGA 447 Query 2852 TCACGTGGGCCGACCTCAACGAGGAGGAGAGCA--CGCAGATCGTGCGCGACGTGAAG 2907 || |||| |||||| |||| | | ||| || | | ||||||||| ||||| Sbjct 448 TCCGCTGGGACGACCTGGACGA--ACGCCGGCAGGCGGTGCTGGTGCGCGACATGAAG 503 >seq99053 Length=261 Score = 84.2 bits (92), Expect = 9e-12 Identities = 111/153 (73%), Gaps = 11/153 (7%) Strand=Plus/Minus Query 10157 TCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGC-CGCATCCGCACG 10215 ||| || ||||||| | || || ||| | | |||||| |||| ||| ||| || ||||| Sbjct 261 TCGCCGGCGAGTACATCCGTAAAGGCTCCCAGGTCTATGTCGAAGGCACGCTTC-GCACG 203 Query 10216 CGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGATCGTCGCCGA---- 10271 || || ||||| | | | ||||||||||||||| || |||||| | |||| ||| Sbjct 202 CGCAAATGGCAAGGGCAGGACGGCCAGGATCGCTATACCACCGAGGTAGTCGTCGACATC 143 Query 10272 -----GAAGATGCAGATGCTCGGCGACCGCCGC 10299 || |||||| ||||||||| |||| || Sbjct 142 AACGGCAATATGCAGTTGCTCGGCGGCCGCAGC 110 >seq69341 Length=1420 Score = 84.2 bits (92), Expect = 9e-12 Identities = 159/226 (70%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 ||||||||| ||||| ||||||||||||||||| ||||| || | |||| ||| Sbjct 1104 CGTCAACAAGGTCATTCTCGTCGGCAATCTCGGGCGTGACCCCGAGTCGCGCTCGTTCCA 1163 Query 10032 GAGCGGCGACGCAA--TCTCCAACATCCGCCTCGCTACGACCG-ATCGCTACAAGGACAA 10088 || ||||| |||| | ||| | ||| |||| ||| | | |||| | |||||| Sbjct 1164 GAACGGCG--GCAAGGTGGTGAACCTGCGCATCGCGACGTCGGAATCG-TGGAAGGACCG 1220 Query 10089 GGCGAGCGGCGAGATGAAGGAATCGACCGAATGGCAC-CG--CGTCAGCTTCTTCGGCCG 10145 | ||||||| ||||| |||||| |||||| || ||| | || | || Sbjct 1221 CAACACCGGCGAGCGCAAGGAGAAGACCGAGTGGCACTCGGTCGTGATCTACAACGAGAA 1280 Query 10146 CCTCGCCGAGATCGTCGACG-AGTACCTGCGCAAGGGCGCGCCGGT 10190 ||||||| | | | ||||| ||||||||||||||||||| | ||| Sbjct 1281 CCTCGCCCGGGTGGCCGACGCAGTACCTGCGCAAGGGCGCCCAGGT 1326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197482758917400