Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_018836.1 Length=50255 Score E Sequences producing significant alignments: (Bits) Value seq112455 102 3e-17 >seq112455 Length=335 Score = 102 bits (112), Expect = 3e-17 Identities = 198/289 (69%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 30055 CTCCCGCGAGGGCGACCACACGTTCATCGTGGCCCTGGGCGACACCCAGTTCGGCAAGAC 30114 ||| |||| ||| || || || || | || ||||| ||||| |||||||||| | | Sbjct 308 CTCACGCGCCGGCAACGACGTCTTTGTCTTCGCGCTGGGTGACACGCAGTTCGGCAGGTC 249 Query 30115 CGACGGGGACGGCGTCGAAGGCACCCTGGCCCGAGCGATCGACTGCATCAACGAGGCCGC 30174 ||||| ||||| ||||| ||||| ||| || | | | |||| | | || ||| Sbjct 248 -GACGGTGACGGTGTCGAGGGCACGCTGCAGCGTGTGCTGGACTCGACC---GATCGCGC 193 Query 30175 CCGGCAGCTCACCTGGTACC-GCGAGCGCTTCGACATCGAGCA-----CGTACACGTCGC 30228 ||||||| | | | | | ||| | || | || ||| | ||| |||| Sbjct 192 TCGGCAGCGCCTCGAGGATCTGCGCTCACTCGGTCACCGACCTTCAGCCGTCTACGTAAG 133 Query 30229 CTGGCTCGGTGACCACATCGAAGGGTTCGTCTCCCAGGGCGGCGCGAACTCCTGGCGCAC 30288 ||||||||| ||| |||||| || || |||||||||||| ||| |||||||||| Sbjct 132 CTGGCTCGGCGACTGCATCGAGGGCTTTCAGTCCCAGGGCGGCAACAACGCCTGGCGCAC 73 Query 30289 CGGCCTGACCCTGACCGAGCAGATCCGGCTCGACCGCCGGGTCAAGCTC 30337 ||||||||||||||||| | || |||| ||||| |||| |||| Sbjct 72 ACCGATGACCCTGACCGAGCAGGTGCGTCTCGTGCGCCGAGTCATGCTC 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160445755546200