Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_018837.1 Length=122024 Score E Sequences producing significant alignments: (Bits) Value seq36301 86.0 5e-12 seq34483 82.4 6e-11 seq31229 82.4 6e-11 >seq36301 Length=2078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/191 (71%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 56273 ACTCATGAGTTCTACAACAAACGTCGTCAAGAACTAGAGACCGTAGAGCCAAACTTAGCC 56332 || ||||| || || |||||||| || |||| | | | ||||||||||| |||| Sbjct 1720 ACACATGAATTTTATAACAAACGCCGAAAAGAGTTGGGTTCTGTAGAGCCAAATATAGCT 1779 Query 56333 CATCTTCGTATTGCTGAGTGGTTTAATA--GATTCAGTGGGGTGGTTAACA----TCACT 56386 ||||| |||||||| || |||||||||| || || || |||||| | |||| Sbjct 1780 CATCTGCGTATTGCAGAATGGTTTAATAAGTATCCA--GGTCAGGTTAAAAAATTTCACA 1837 Query 56387 ACTAACGTTGATGACCTTATTGAACGAGCTGGAGTTCCTAGGGGTGAAGTACTTCATGTT 56446 || || ||||||||| | ||||| || ||| |||| | | ||||| |||||| Sbjct 1838 ACAAAACGTGATGACCTGCTAGAACGTGCAGGAATTCCCCGTGAAGAAGTTATTCATGCA 1897 Query 56447 CATGGGTACCT 56457 ||||| || || Sbjct 1898 CATGGCTATCT 1908 >seq34483 Length=1392 Score = 82.4 bits (90), Expect = 6e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39781 CGCCCTACAGGATTCGAACCTGTAACCTACGAATTAGAACTACGTTGCTCTGTCCAATTG 39840 ||||||||||||||||||||||| ||||||| |||||| || |||||| |||| || Sbjct 1306 CGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCCAGCTG 1247 Query 39841 AGCTAAGAGCGCG 39853 ||||||| ||||| Sbjct 1246 AGCTAAGGGCGCG 1234 >seq31229 Length=3871 Score = 82.4 bits (90), Expect = 6e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 39781 CGCCCTACAGGATTCGAACCTGTAACCTACGAATTAGAACTACGTTGCTCTGTCCAATTG 39840 ||||||||||||||||||||||| ||||||| |||||| || |||||| |||| || Sbjct 57 CGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCCAGCTG 116 Query 39841 AGCTAAGAGCGCG 39853 ||||||| ||||| Sbjct 117 AGCTAAGGGCGCG 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 389732108825500