Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq33108 172 6e-38 seq49372 134 1e-26 seq49234 120 3e-22 seq31280 116 4e-21 seq50823 104 3e-17 seq72596 86.0 7e-12 seq34305 84.2 2e-11 >seq33108 Length=3479 Score = 172 bits (190), Expect = 6e-38 Identities = 146/180 (81%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || || || ||| | ||||||||||| ||||| |||||||| |||||||| || || || Sbjct 2789 GGCGGGCAGCACTTAAACGTTAACGTCCTGCGCCGTGAAACGCTGGAAGACGCCGTGAAA 2848 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 ||||| || || ||||||||||||||||| ||||| ||||| ||||| || |||||||| Sbjct 2849 CATCCTGAGAAGTATCCGCAGCTGACCATTCGTGTTTCCGGGTATGCCGTGCGCTTTAAT 2908 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCTATAA 43901 || ||||| || ||||| ||||| ||||| || || || || ||||| || ||| ||||| Sbjct 2909 TCGCTGACGCCTGAACAACAGCGTGACGTCATTGCCCGTACCTTTACGGAAAGTTTATAA 2968 >seq49372 Length=1062 Score = 134 bits (148), Expect = 1e-26 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 38142 TATGACCATGATACTATTCATGAAGCCATTGCACTAACAGACCGTCCAGCGTATACATTT 38201 |||||||||||||||||||| ||||| || | || ||| || || |||| Sbjct 635 TATGACCATGATACTATTCACGAAGCGATAAAAGTACTTGACAAACCTGCATATATGAAC 576 Query 38202 TATATGAAAGACGGTTCTGAAGTCATGACATCACGCGAGAAGTTCGAATCATTACCAGAA 38261 ||||| || ||| | || || |||||| || |||||| || |||| Sbjct 575 TATATTGTGGAAGGTGCAGACGTTATGACAAGTAAAGAAAAGTTCTTTGCA----CAGAG 520 Query 38262 --ATG--GTCAAATTGGCCGGTGTATACGAAGAATCATGTGTACTAGCATTAGAACGTTC 38317 ||| || ||||| |||||||| |||||| ||||||| || |||||||||||||| Sbjct 519 CGATGAAGTTAAATTATTGGGTGTATATGAAGAAACATGTGTTCTTGCATTAGAACGTTC 460 Query 38318 TCAAATTCCTAATGACTTTAAAATTAACCCTGAAGCCAGTTTTATGATGGCATTAGAAAA 38377 ||||| |||||| | ||| ||||| | ||| |||||||| | || |||| || Sbjct 459 ACAAATCCCTAATAATTTTGAAATTGATCCTCGTCAGAGTTTTATTACTGCTTTAGTTAA 400 Query 38378 AGTATGTACAAGCATCACCTCCGGTTGGTTCCGTGAGTATGCCTGGGAAAACTACAGCAA 38437 ||| |||| || || || || || ||||| | || | | | ||||| || | | | Sbjct 399 AGTGTGTAGTAGTATTACGTCAGGATGGTTTAGAGAATTTTCTTGGGAGAATTTTAATAC 340 Query 38438 AGTAGTAAGTATGTACCAAAGCTTAGGACATGATGATTACGTCAAACGTTTCAAACAAAA 38497 |||||| | |||||| | | || || | |||||||| | |||||||||||| |||| Sbjct 339 AGTAGTTAATATGTATCGTAAATTTGGCGAAGATGATTATATTAAACGTTTCAAAGAAAA 280 >seq49234 Length=879 Score = 120 bits (132), Expect = 3e-22 Identities = 133/176 (76%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 41608 ATGACTCGTATCAATTTAACACTTGTTTCTGAACTGACCGACCAACATCTTATGGCTGAG 41667 ||||| ||||||||| | || || ||| | | |||||||||||||||||||| Sbjct 549 ATGACCCGTATCAATCTCGTACCAGTACAAGAATTAGCTGACCAACATCTTATGGCTGAA 490 Query 41668 TATCGTGAATTACCACGCGTATTTGGTGCAGTCCGTAAACATGTTCAAAACGGTAAACGT 41727 || |||||||| ||||| ||||| ||||| || ||||| || || ||| |||||||| Sbjct 489 TACCGTGAATTGCCACGTGTATTCGGTGCTGTTCGTAAGCACGTACAAGCTGGTAAACGA 430 Query 41728 GTAAAGGATTTTAAAATCTCCCCGACATTTATCTTAGGCACAGGTCATGTAACATT 41783 | || |||||||||||| | || | || ||||| ||||||||||| ||||| Sbjct 429 ATCAATGATTTTAAAATCAGTACTACCTACAT-TTAGGTACAGGTCATGTTACATT 375 >seq31280 Length=10079 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 132137 GGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAA 132196 ||||||| | ||||| ||| ||| || |||| || || ||||| || || || ||| Sbjct 1550 GGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAGCACTTCCAGACAGCGGTGAAA 1491 Query 132197 TCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCAC 132256 || ||||| || || || | ||||| || || || || || |||||||||||||| Sbjct 1490 TCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGACGCTGTTCTATCCGATGTGGCAT 1431 Query 132257 TTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATT 132316 | |||||||| | ||| ||||| |||||||| ||| || ||||| | ||||| | Sbjct 1430 CTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAAGGTAACCGCGTA 1371 Query 132317 CGACATATGGACTACGG 132333 || || ||||||||||| Sbjct 1370 CGTCACATGGACTACGG 1354 >seq50823 Length=3276 Score = 104 bits (114), Expect = 3e-17 Identities = 106/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 41608 ATGACTCGTATCAATTTAACACTTGTTTCTGAACTGACCGACCAACATCTTATGGCTGAG 41667 |||||||| || |||||| | ||| ||| || |||| |||||||| |||||||| Sbjct 308 ATGACTCGGATAAATTTAGTTCCGGTTCAGGAATTGGCCGATCAACATCTGATGGCTGAA 249 Query 41668 TATCGTGAATTACCACGCGTATTTGGTGCAGTCCGTAAACATGTTCAAAACGGTAAACGT 41727 ||||||||||||||||| |||||||||||||| | ||||| ||| | || ||| | Sbjct 248 TATCGTGAATTACCACGTGTATTTGGTGCAGTAAGGAAACACGTTGATGCTGGGAAA-AT 190 Query 41728 GTAAAGGATTTTAAAAT 41744 | || ||||||||||| Sbjct 189 ATTAATGATTTTAAAAT 173 >seq72596 Length=790 Score = 86.0 bits (94), Expect = 7e-12 Identities = 175/257 (68%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 59845 TTCCCTAAACTTGTTATGTTCATTGAAGAGGGTGTCAATCTTTATAAAGACGACCCGAAC 59904 || |||||| || | | || || |||| ||||| |||||| | || | || || || Sbjct 522 TTTCCTAAAGTTATATTCTTTCTTAAAGATGGTGTAAATCTTAAAGAAAATGATCCTAAT 581 Query 59905 TATGATATTAAGCAGCTTGCTCTAGAGTGTGCAAGCAAAAGAATGTATCCTGATATTATT 59964 |||||| | || | | || | | |||| |||||||| ||||| ||| | || Sbjct 582 TATGATTTAAAAGAACAAGCAATTAAAACTGCATCTAAAAGAATATATCCAGATTTCATA 641 Query 59965 TCAGTTAA---GAACAATAAAGCTATCACTGGTTC---ATCTATTCCTGTTTCTCCAATG 60018 || || | ||| || |||| | || ||| ||| ||||| ||| ||||||| Sbjct 642 TCGGTAGACTTGAATAAAAAAG---TGACGCATTCTGAATCAATTCCAGTTAGTCCAATG 698 Query 60019 GGTTGTCGTAGTTTCTTGAGTGTATGGAAAGATTCGACTGGAAATGAAATTCTTGATGGA 60078 ||||||||| |||||| ||| |||||||||| | ||||||||||| | ||||| Sbjct 699 GGTTGTCGTTCTTTCTT-AGTTCATGGAAAGATGAAAATGGAAATGAAAAATTCGATGGT 757 Query 60079 CGTAATAATCTTGGTGT 60095 | |||| ||||||| Sbjct 758 AGATTTAATATTGGTGT 774 >seq34305 Length=2218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || || || || ||||| |||||||| || || |||| || || ||| | | Sbjct 765 GGCGGCCAGCATCTGAATGTTAACGTGATGAACCGGGAAATGTTGATGGACGCAATGGAT 706 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 | || || |||||||| ||| | |||||||| || || || ||||| |||||||||||| Sbjct 705 AACCCTGAGAAATATCCTCAGTTAACCATCCGCGTTTCGGGCTATGCCGTTCGCTTTAAC 646 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAG 43892 || || || || ||||||| ||||| || | || || |||||| || Sbjct 645 TCGCTCACCAAAGAGCAGCAGCAGGACGTGATTACCCGTACCTTTACCCAG 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540296156984000