Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq55576 250 4e-61 seq37656 208 1e-48 seq33294 192 8e-44 seq75989 163 4e-35 seq8838 147 3e-30 seq67724 132 7e-26 seq98211 111 2e-19 seq40709 86.0 9e-12 >seq55576 Length=704 Score = 250 bits (276), Expect = 4e-61 Identities = 409/576 (71%), Gaps = 14/576 (2%) Strand=Plus/Minus Query 139532 GATCTGGTC-TTCCAGCGTGAAGGCGGCCTTGGCGGCGGTGCGCGACATGGTCCGCCCCG 139590 |||||| || ||| | |||||| | ||| || ||| || |||||| ||||| | Sbjct 568 GATCTGATCCTTCGATGGTGAAGACCTTCTTCGCCTTGGTTCGGCTCATGGTGCGCCCGG 509 Query 139591 CGCCGTGCGAGCACGAGCAGAACGAGTCGGCGTTGCCCTTGCCGCGCACGATGTAGGACT 139650 ||||||| ||| |||||||||| || |||| ||| |||||||||||||||| || Sbjct 508 CGCCGTGGCTGCAGGAGCAGAACGCCTCCTCGTTACCCAGGCCGCGCACGATGTAGCTCT 449 Query 139651 TGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTCTGAGCCGACACCGCGCCCT 139710 |||| ||||| ||||||||||||||||| | | | |||||| || ||||||||||| | Sbjct 448 TGGCGCCCATGGAGCCGGGGATGATGCCCAGTTCGCCCTTCTTCGCTGACACCGCGCCTT 389 Query 139711 TGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTCCTTCTGGACGTAGTTGTGGTGGC 139770 | ||||| || | ||| || ||||||| |||||||| |||||||||||||||| Sbjct 388 TACGGGTTACCAGCACCTCTTCACCGAAGTGACGTTCCTTCTGCACGTAGTTGTGGTGGC 329 Query 139771 AGTTCACCGCTTCCTTGTCCGTCTTGAAGGGCGGCAGGCCCGAGGCGCGCATGGCGTCCA 139830 ||||||| || ||| | || || ||| || | | | | || ||| || || | Sbjct 328 AGTTCACTGCCTCCAGGGCCACCTCGAACGGTTTGACGATC-ACGC-CGCGTGCCGCCGC 271 Query 139831 GGAC-CCGGAT-CATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGACCCCAGGCGAC 139888 | | ||| || |||||||| | ||||||| | ||||||||||| ||||| | || Sbjct 270 GATCACCGCATGCATCATCAGCGCGCGGTTCTGCTTGGCGAAGTCCTGCGCCCAGCCCAC 211 Query 139889 GGCTTCCACGTAGTCGTAGAA-TTCCGGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGT 139947 |||||||| ||||| | ||| | | |||| ||||||| | | || ||||| | Sbjct 210 AGCTTCCACATAGTCATCGAAGTGCTGGCT-GCCTTCCTCGAAGTAGGCCAGGTCACGAT 152 Query 139948 CGAGCGGCTTCTGACCGTCCCGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATAC 140007 | || | || || | | |||| ||| ||| |||| |||||||| | Sbjct 151 CCGGCAGGTTGGCGATGTGCTGGCGCA-TATC--GGCCTGGGCCAGTTCGATGAACAGGT 95 Query 140008 GGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCG--CTG 140065 |||||||| ||| || || |||||||| || ||| ||||| | ||||||||| ||| Sbjct 94 TGCCGATGGCGTTACCCACACCGCGCGAACCGCTGTGCAGCATGAACCAGACGCGGCCTG 35 Query 140066 GTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 140101 | || || |||||||| |||||||| |||||||| Sbjct 34 --CTTCATCCAGGCAGACTTCGATGAAATGGTTGCC 1 >seq37656 Length=523 Score = 208 bits (230), Expect = 1e-48 Identities = 272/368 (74%), Gaps = 9/368 (2%) Strand=Plus/Plus Query 139757 GTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGGC-GGCAGGCCCGAGG 139815 |||||||||||||||||||||||| || | || || ||| | ||| | | | Sbjct 1 GTAGTTGTGGTGGCAGTTCACCGCCTCGGCCTGCGCCTCGAACGCTTGGCGATCACC--G 58 Query 139816 CGCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCT 139875 ||| | || || | || | | |||||| |||||||||||||||||||| || || Sbjct 59 TGCGGACCGCCTCGACCACGCTGCGCATCATGATCTCGCGGTTGATCCGCGCATAGCGCT 118 Query 139876 GACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCC-GGCTCGCCTTCCGACAGCCAC 139934 | ||||| | || || |||||||||| | | | | |||| |||||||| ||| | Sbjct 119 GCGCCCAGTCCACCGCGAACACGTAGTCGCCGTAGTGCTGGCT-GCCTTCCGGCAGATAG 177 Query 139935 GCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGCAGCATCATCTCCTTGGCCTTC 139994 || ||||||| ||| || | || || | ||| | ||| |||| ||||||||| | Sbjct 178 GCCAGGTCCTGGTCCGGCAGGTT--GATCATCCAG-CGCCGCATTTCCTCCTTGGCAAGC 234 Query 139995 TCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACC 140054 | ||||||| |||||| | ||||||||||||||||| |||||||| ||||||||| Sbjct 235 TGGATGAAGTGGTTGCCGATCGCATTGCCGACGCCGCGCGA-CCCGAGTGCAGCATCACC 293 Query 140055 CAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGCGTG 140114 || || ||| || ||||||||||| | |||||||||||||||||| ||||||| |||| Sbjct 294 CACACCCGCGCCTCTTCGTCGAGGCACAGCTCGATGAAGTGGTTGCCACCGCCCAACGTG 353 Query 140115 CCCAGTTG 140122 ||||| || Sbjct 354 CCCAGCTG 361 >seq33294 Length=727 Score = 192 bits (212), Expect = 8e-44 Identities = 420/610 (69%), Gaps = 27/610 (4%) Strand=Plus/Minus Query 84636 GGTTCTTGACCTGGAACGAACCCGAGAGGGTCTTGTGCAGGAAGGTGTTGGCGCGGTTGG 84695 ||||||||||| ||| ||||| || |||||||| | || | ||||| || | | Sbjct 608 GGTTCTTGACCGCGAAGCTGCCCGACAGCGTCTTGTGGGTGTAGATATTGGCCGGGATCG 549 Query 84696 GCTCGATCGACGGCGAAGC-GCCGCCGCAGAGGATCGACGAGGAGGCGTTGGGGGCCACC 84754 ||||||| | |||| | ||||||||||| |||||| || ||| | || || | | Sbjct 548 GCTCGATGCA-GGCGCTGGTGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCGCGATC 490 Query 84755 GCCAGCTTGTGGGCGAAGCGCTCGC-----CCGA-GCCTTCCATGTCAGGGGCCTCGCCG 84808 |||| |||| | | |||||||| |||| | | | ||| ||| | ||| Sbjct 489 GCCATCTTGCAG-CTAAGCGCTCCATGACGCCGACGTCGGCGGCGTCCGGGCACGGCCCG 431 Query 84809 CGCTCGGCGCCCAGGACCAGCGACGCCGCGTCGGCCTT-GCGGCGCATGTGGCGGAAGAT 84867 ||||| ||| | || || ||||||| || ||| ||| | ||||| ||| || Sbjct 430 CGCTCCGCGGCGAGCGTCATCGACGCCTGGTTCACCTGCGCGTTG-ATGTGCTTGAACAT 372 Query 84868 GGTCTTATTG-AGCGTCTCGGCCGCCATGCTCTCGAACGGGATGTCGAGCGACTGGAGCA 84926 | | || ||| ||| |||| | || ||||||||| | || ||| ||| || | Sbjct 371 GCGCAGGTTCCAGC-TCTTGGCCATCGCGCCCTCGAACGGCAGCCCGCGCG-CTGCAGGA 314 Query 84927 GCGAGTGGAAGCCCAGCAGGCCCAGGCCCACCGAGCGCTCGCGCACGGCGCTGTAGGAGG 84986 |||||||||||||| || |||||| |||||||||||||||||| | ||||| |||| | Sbjct 313 ACGAGTGGAAGCCCATCACGCCCAGACCCACCGAGCGCTCGCGCGCCGCGCTATAGGCCG 254 Query 84987 CCCGGTGCATCTCG--TCCGGCGCGTTGTCGATGAACACCTGGAGGCAGTTGTCCAGCAT 85044 | || | ||| || | || ||| ||||||| | |||| ||| |||||| || | Sbjct 253 CGCGCTCCATGCCGGGTTCGTGGCG--GTCGATGTAATCCTGCAGGACGTTGTCGAGGAA 196 Query 85045 GCGCATCAGGTCTTCGATGAAGGTCGGGTGATCCTTCCATTCGACCCACTTTTCGGCGTT 85104 |||||||| ||| |||| |||| | | |||||||| | | ||||| | ||| ||| Sbjct 195 GCGCATCACGTCCTCGACGAAGCCCTTCTCGTCCTTCCACTGGTCCCACGTCTCGAGGTT 136 Query 85105 GACGCTCGACAGGCAGCAGACGGCCGTGCGCATCTTGCCGAACACGTCGCG-GCCGGTGC 85163 || ||||||||||||||| || ||||| ||||||| |||||| |||||| | Sbjct 135 GAGCGACGACAGGCAGCAGACCGCGGTGCGGTCGTTGCCGAGATGGTCGCGTGCCGGT-C 77 Query 85164 CCAGCATGATCTCCGAGCAGTTGCCCGTCAGGT--AGCCGTTGAAGACCAGC---CGGTT 85218 |||| ||||||| ||| | || |||| || | |||| | ||||| |||| Sbjct 76 GCAGCGTGATCTCGCTGCACAGGTTCG--AGGTCGAGACCTTGAGGCCCAGCTCGCGGTG 19 Query 85219 GCGCTTGGGC 85228 | |||||||| Sbjct 18 GTGCTTGGGC 9 >seq75989 Length=485 Score = 163 bits (180), Expect = 4e-35 Identities = 173/224 (77%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 140268 CCGTGCGGGACGGCGTGCTCGATCAGCG-AGCGCAGCTTGGCGAGGCTGTCGGGCAGGTC 140326 |||||||| ||||| | |||||| ||| ||||||| | ||| |||| |||||||| Sbjct 40 CCGTGCGGCACGGCTTTCTCGATG-GCGCAGCGCAGGCCGTGCAGGTTGTCCGGCAGGTC 98 Query 140327 CGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGC 140386 | | | |||||| ||||||| |||| ||||| |||||||||||||||||| ||||||| Sbjct 99 GGCGCCGGTCAGCGTGGTGCGCGCGGCGATCATCCCGCAGCCGATGTCCACG-CCACGGC 157 Query 140387 CGCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCAT 140446 || |||||||| |||||| | |||||||| ||| | ||||||||| |||||| Sbjct 158 AGCAGGGATGATCGCGCCCACCGAGGGGATCACGCTGCCGATGGTCGAGCCCTTGCCCAG 217 Query 140447 GTGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCA 140490 || ||||| ||||||| |||| ||| | ||||||||||| Sbjct 218 ATGCACGTCGGGCATCACCGCCAGGTGCTTGAAGATGAACGGCA 261 >seq8838 Length=703 Score = 147 bits (162), Expect = 3e-30 Identities = 412/621 (66%), Gaps = 35/621 (6%) Strand=Plus/Plus Query 83284 CGGCGATGTAGCGGATGTACTTCTTGGTGT-CCTCGGGCGTGACGCCGTCGACCTCGCCC 83342 |||||||||||||||||| ||||||| | | ||| |||| | | || |||| |||| Sbjct 77 CGGCGATGTAGCGGATGT-CTTCTTGATATGCCTTGGGCTTCATCCCTCGGACCGGGCCC 135 Query 83343 AGGGCGAAGGCTTGGTCGATGAAGGC-GTCTTCCAGGTCGACCATCCGGCGGCCGGCGTC 83401 | |||| || |||||||||| ||| || || || | || ||| | |||| Sbjct 136 ATCTCGAACGCGAGGTCGATGAAAATTGTCCTCGAGCCGGATCGTCGTCTGGCAGACGTC 195 Query 83402 GTAGATGCGCTTCTTGGTCTCGTCGTTCCAGGCGCGCGGGTGCTCCTTGATCAACTCGTG 83461 | |||| | |||| | | | | || |||| | || |||| || | | ||| Sbjct 196 GGCGATGTCGTCCTTGACCGCCTTGGTC-AGGCACT--GGCGCTCGGCGACGAGGT-GTG 251 Query 83462 CAGGAGCTTGATCATGCTCTCGACGTGGTGGGTCTCGTCGCGGATCGACCACTCGACGAT 83521 | | |||||| |||| |||| ||| | |||||||||| | |||||| |||||| Sbjct 252 GAACATCTTGATGATGCCCTCGCAGTGCAGCCTCTCGTCGCGCACCGACCAGCTGACGAT 311 Query 83522 CGTGGTCATGCCCTTCATCAGGCCGCGCCGCTGGTAGTTCATCAGCAGGGCGAACGAGGA 83581 | | ||||||||||||| | | ||| || |||||||||||| ||||| || | Sbjct 312 CTGGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATCGCGAAGGACGC 371 Query 83582 GAAAAGCTGCATGCCTTCGCCGAAGGCCGAGAACACGGCGATGTCGACGATCAG-GT-CG 83639 ||| |||| || ||| ||| |||| | ||||| ||| ||| || || Sbjct 372 GAACAGCTTCACGCCCTCGGTGAAGCCGCCGAACATGGC------------CAGCGTACG 419 Query 83640 GCGATCGACGTGCCGCTCTCG-CGCTCGAA-----CATGTACTCGTGCTTTTCACGCATC 83693 ||||| | | |||| ||| ||| |||| |||||| || ||||| || |||| Sbjct 420 GCGATGTCCTCGTCGCTGTCGACGC-CGAATTCTGCATGTAATCATGCTTGTCCTTCATC 478 Query 83694 GCCTGATAGTCCAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGGTGTCGATCAGG 83753 | ||| || |||||||||| | ||||| |||||||| ||| | ||||||| |||| Sbjct 479 TCGCCATATTCGAGGAAGGCGCCGTACTCGCTCTCGGGCATGCCGATCGTGTCGAGCAGG 538 Query 83754 GTG-GCGTAGGCGNNNNNNNNNNNNNNNTC--GGCCGCCATGAACGAGGCCAGCATCATC 83810 ||| | ||| || || | || |||||| || |||||||||| Sbjct 539 GTGCGAGTAAGCCGCGATGTGCACCGTCTCCATGTTGC--TGAACGCGGTCAGCATCATC 596 Query 83811 CGCACCTCCGGGTGCGGGAA-GCGCGGGCCGTACTTTTCGAAGTAGCCGCGCGCCACATC 83869 | ||| | || ||| ||| ||||||| || ||| ||||| | | ||| || Sbjct 597 TTGATCTCGGTCGGCTTGAACACGC-GGCCGTATTTCTCGTGGTAGCAGTCCTGCACCTC 655 Query 83870 GACGTCGGCCTGGGTGAAGAA 83890 ||||||||||||||||||||| Sbjct 656 GACGTCGGCCTGGGTGAAGAA 676 >seq67724 Length=1524 Score = 132 bits (146), Expect = 7e-26 Identities = 142/181 (78%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 140336 CAGCGAGGTGCGCACGGCC-ATCATGCCGCAGCC-GATGTCCACGCCCACGGCCGCCGGG 140393 ||||||||||||| ||| | ||||| |||||||| ||||||||| ||||| || || || Sbjct 1509 CAGCGAGGTGCGCGCGGGCGATCATCCCGCAGCCCGATGTCCACACCCACCGCGGCAGGC 1450 Query 140394 ATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATGTGGACG 140453 | ||| ||||| ||||||| | ||||||||| ||||||| ||| |||||| ||| ||| Sbjct 1449 ACGATCGCGCCGATGGTCGGCACCACCGAGCCGACGGTCGCGCCCTTGCCCAGGTGCACG 1390 Query 140454 TCCGGCATCAGGGCCA-CATGCGAGTGGATGAACGGCAGGGCGGCGAGGTTGTGCGCCTG 140512 |||||||| || | | |||| |||||||| ||||| ||||| ||| ||| ||| Sbjct 1389 -ACGGCATCACCGCGATCCAGCGA-TGGATGAAGGGCAGCTTGGCGATGTTCTGCAGCTG 1332 Query 140513 C 140513 | Sbjct 1331 C 1331 >seq98211 Length=569 Score = 111 bits (122), Expect = 2e-19 Identities = 317/471 (67%), Gaps = 25/471 (5%) Strand=Plus/Minus Query 84636 GGTTCTTGACCTGGAACGAACCCGAGAGGGTCTTGTGCAGGAAGGTGTTGGCGCGGTTGG 84695 ||||||||||| ||| ||||| || |||||||| | || | ||||| || | | Sbjct 465 GGTTCTTGACCGCGAAGCTGCCCGACAGCGTCTTGTGGGTGTAGATATTGGCCGGGATCG 406 Query 84696 GCTCGATCGACGGCGAAGC-GCCGCCGCAGAGGATCGACGAGGAGGCGTTGGGGGCCACC 84754 ||||||| | |||| | ||||||||||| |||||| || ||| | || || | | Sbjct 405 GCTCGATGCA-GGCGCTGGTGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCGCGATC 347 Query 84755 GCCAGCTTGTGGG-CGAAGCGCTCGCCCGAGCCTTCCA-TGTCAGGGGCC-TCG------ 84805 |||| |||| | |||| ||||| | | | ||| |||| | ||| ||| Sbjct 346 GCCATCTTGCAGCTCGAACCGCTC--CAGTCACGCCCAGTGTCGGCGGCGATCGGGGCAG 289 Query 84806 --CCGCGCTCGGCGCCCAGGACCAGCGACGCCGCGTCGGCCTTGCGGCGC-ATGTGGCGG 84862 |||||||||| | | ||| || ||||||| |||| ||| ||| | | ||| | Sbjct 288 GCCCGCGCTCGGTGGCGAGGTGCATCGACGCCTCGTCCACCT-GCGCCTTGACGTGCTTG 230 Query 84863 AA-GA-TGGTCTTATTGAGCGTCTCGGCCGC-CATGCTCTCGAACGGGATGTCGAGCGAC 84919 || || || | || || || |||| | | || |||||| || | || ||| | Sbjct 229 AACGAGTGCGCAGGTTCCACGACTTGGCCACTCGCGCCCTCGAAGGGCAGACCGCGCGCC 170 Query 84920 TGGAGCAGCGAGTGGAAG-CCCAGCAGGCCCAGGCCCACCGAGCGCTCGCGCACGGCGCT 84978 ||||| | ||| || |||| | ||||||||||||||| ||||||||| ||||| Sbjct 169 TGGAGGAAGCTGTGCCAGGCCCATGACGCCCAGGCCCACCGACCGCTCGCGCGCGGCGGA 110 Query 84979 GTAGGAGGCCCGGTGCATCTC--GTCCGGCGCGTTGTCGATGAACACCTGGAGGCAGTTG 85036 |||| ||| || | |||| | | ||||||| ||||| | ||||||| ||| Sbjct 109 ATAGGCGGCGCGCTCCATCCCCGGCTCGGCGCG--ATCGATATAGTCCTGGAGCACATTG 52 Query 85037 TCCAGCATGCGCATCAGGTCTTCGATGAAGGTCGGGTGATCCTTCCATTCG 85087 || || | ||||||| ||| ||||||||| ||| |||||||| ||| Sbjct 51 TCGAGGAACCGCATCACGTCCTCGATGAAGCGGCGGTCGTCCTTCCACTCG 1 >seq40709 Length=1971 Score = 86.0 bits (94), Expect = 9e-12 Identities = 169/239 (71%), Gaps = 12/239 (5%) Strand=Plus/Plus Query 132075 GCGCAGGATCATGGTCTCGAAGTACGAGGTCAGCCAGGGCAGGC--GCGGGTCGAGGTTC 132132 |||||| | || ||||| | |||||| | || |||| |||| ||| |||| | | Sbjct 981 GCGCAGCAGCAGCGTCTCCAGGTACGACGGCACCCAGT--AGGCCTGCGCGTCGGTGGAC 1038 Query 132133 TCGACGCTGATCAGCGCGTTCTTGACCGGGATCATCATGCCCTCGGGCACGGCCTTGATC 132192 |||| | | ||||||||||| | | ||| | || |||||||||||||||| ||| Sbjct 1039 TCGATGGTCATCAGCGCGTTGTGGGTCGGCACCACGCTGCCCTCGGGCACGGCGCGGATG 1098 Query 132193 CGCAGCGGCAGGTAGCCGCCGTACTCGTTC-AGGATGATCTC-CCAGCCGTCACGGTTGA 132250 || | ||||| | ||||||| | || || | |||| || | ||||||| | ||||| Sbjct 1099 CGGATCGGCAACTGGCCGCCG-AGGCGGTCGACGATG-TCGCGCCAGCCGGCCTCGTTGA 1156 Query 132251 ACGGCAGGCCATGGGCCG-GCAC-GAACGCGGCCATCTCTTCGATGTCGGCGCGGGTGA 132307 ||||| ||| || || | | || | |||| | ||| ||||||||||| |||||| Sbjct 1157 ACGGCTCGCCGTGCGCGGCGAACAGGTCGCG--CGCCTCGTCGATGTCGGCATGGGTGA 1213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714610179840000