Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq55576 316 3e-81 seq33294 210 3e-49 seq37656 206 4e-48 seq8838 181 2e-40 seq98211 159 5e-34 seq35885 143 4e-29 seq75989 105 9e-18 seq96425 96.9 5e-15 >seq55576 Length=704 Score = 316 bits (350), Expect = 3e-81 Identities = 456/630 (72%), Gaps = 15/630 (2%) Strand=Plus/Minus Query 137303 ATTTCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCT-CGGTGGCCTTGATCTG 137361 ||||||||||||||| |||||||||||||||| ||||| | | ||||| |||||| Sbjct 622 ATTTCGTCGATCACGTCGGCGTCCTTGCGGCATTCCACACTGAGCCGTGGCGCGGATCTG 563 Query 137362 GTCCTCC-AGAGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGT 137420 |||| | | |||||| | ||| |||| ||| || ||| || || || ||||||| Sbjct 562 ATCCTTCGATGGTGAAGACCTTCTTCGCCTTGGTTCGGCTCATGGTGCGCCCGGCGCCGT 503 Query 137421 GCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCC 137480 | ||| |||||||||| ||| | || ||| |||||||||||||||| |||||| | Sbjct 502 GGCTGCAGGAGCAGAACGCCTCCTCGTTACCCAGGCCGCGCACGATGTAGCTCTTGGCGC 443 Query 137481 CCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGG 137540 |||| |||||||||||||| || | | | |||||| ||| ||||||||||| || |||| Sbjct 442 CCATGGAGCCGGGGATGATGCCCAGTTCGCCCTTCTTCGCTGACACCGCGCCTTTACGGG 383 Query 137541 TCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCA 137600 | || | ||| || ||||||| ||||||||| |||||||||||||||||||||| Sbjct 382 TTACCAGCACCTCTTCACCGAAGTGACGTTCCTTCTGCACGTAGTTGTGGTGGCAGTTCA 323 Query 137601 CCGCTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATG--GCCTCCAGGAC 137658 | || ||| | || || |||||| | | | ||| |||| || ||| | | || Sbjct 322 CTGCCTCCAGGGCCACCTCGAACGGTTTGACGATC-ACG-CCGCGTGCCGCCGCGATCAC 265 Query 137659 CCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTC 137718 | |||||||| | ||||||| | ||||||||||| ||||| | || ||||| Sbjct 264 CGCATGCATCATCAGCGCGCGGTTCTGCTTGGCGAAGTCCTGCGCCCAGCCCACAGCTTC 205 Query 137719 CACGTAGTCGTGGAACT-CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCG 137777 ||| ||||| | ||| | | |||| |||||| || | || ||||| ||| || Sbjct 204 CACATAGTCATCGAAGTGCTGGCT-GCCTTCCTCGAAGTAGGCCAGGTCACGATCCGGCA 146 Query 137778 GCTTGCGCCCGTCACGGCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGA 137837 | ||| || |||||| ||| ||| |||| |||||||| | | ||||| Sbjct 145 GGTTGGCGATGTGCTGGCGCA-TATC--GGCCTGGGCCAGTTCGATGAACAGGTTGCCGA 89 Query 137838 TGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCG--CTGATCCTC 137895 ||| ||| || || |||||||| || ||| ||||| | ||||||||| ||| | || Sbjct 88 TGGCGTTACCCACACCGCGCGAACCGCTGTGCAGCATGAACCAGACGCGGCCTG--CTTC 31 Query 137896 GTCGAGGCAGACCTCGATGAAGTGGTTGCC 137925 || |||||||| |||||||| |||||||| Sbjct 30 ATCCAGGCAGACTTCGATGAAATGGTTGCC 1 >seq33294 Length=727 Score = 210 bits (232), Expect = 3e-49 Identities = 443/647 (68%), Gaps = 24/647 (4%) Strand=Plus/Minus Query 84571 GAAGTGCTGGATCGAGCCCTCGGCCGCGACGATCGACTTCCAGACCGCCTCGGTGTCCAG 84630 || |||||||| ||| || | | ||| |||||| |||| || || || | ||| Sbjct 700 GAGGTGCTGGACCGACCCGCCATGCTCGAGGATCGAGCTCCACACGGCTTCCGAATCCTT 641 Query 84631 GCCCAGTTCGCCCAGGCGCTTCTTCAGCCAGCGGTTCTTGACGGCGAACGAGCCCGACAG 84690 | ||| ||||| ||||||||| | |||||||||| ||||| ||||||||| Sbjct 640 CGACTTCTCGGCCAGGATCTTCTTCAGATACGGGTTCTTGACCGCGAAGCTGCCCGACAG 581 Query 84691 GGTCTTGTGCAGGAAGGTGTTGGCCGGGATCGGCTCGATCGACGGCGA-GGTGCCCCCGC 84749 |||||||| | || | |||||||||||||||||||| | |||| |||||| |||| Sbjct 580 CGTCTTGTGGGTGTAGATATTGGCCGGGATCGGCTCGATGCA-GGCGCTGGTGCCGCCGC 522 Query 84750 AGAGGATCGAGGACGAGGCGTTGGGCGCCACGGCCAGCTTGTGGGCGAACCGCTCGCCCG 84809 ||| ||||||| ||| ||| | ||||| | |||| |||| | | || ||||| | Sbjct 521 AGATGATCGAGATCGACGCGGTCGGCGCGATCGCCATCTTGCAG-CTAAGCGCTC---CA 466 Query 84810 TGCCTTCCATGTC--CGGCGCCTCG-------CCGCGCTCCTTGCCCAGCAGCAGGGAAG 84860 || | | | ||| ||||| | | ||||||||| | | ||| || || | Sbjct 465 TGACGCCGACGTCGGCGGCGTCCGGGCACGGCCCGCGCTCCGCGGCGAGCGTCATCGACG 406 Query 84861 CCGCGTCGGCCTGCTTGCGCATGTGGACGAACAGTTCCAGGTTC-AGCCGGCGGGCGGCG 84919 || || ||||| | ||||| ||||| ||||||| ||| || | || Sbjct 405 CCTGGTTCACCTGCGCGTTGATGTGCTTGAACATGCGCAGGTTCCAGCTCTTGGCCATCG 346 Query 84920 TGACTCTCGAACGGGATGTCCAGCATCTGGAGCAGCGAGTGGAAGCCGAGCAGGCCCAGG 84979 | | ||||||||| | | || ||| || | |||||||||||| | || |||||| Sbjct 345 CGCC-CTCGAACGGCAGCCCGCGCG-CTGCAGGAACGAGTGGAAGCCCATCACGCCCAGA 288 Query 84980 CCCACCGACCGTTCGCGCACGGCGCTGTAGGCGGCGCGGTGCAT--CTCGTCCGGCGCGT 85037 |||||||| || |||||| | ||||| ||||| ||||| | ||| | || || ||| Sbjct 287 CCCACCGAGCGCTCGCGCGCCGCGCTATAGGCCGCGCGCTCCATGCCGGGTTCGTGGCG- 229 Query 85038 TGTCGATGAACACCTGGAGGCAGTTGTCCAGCATGCGCAGCAGGTCTTCGATGAAGGTCG 85097 ||||||| | |||| ||| |||||| || | ||||| || ||| |||| |||| | Sbjct 228 -GTCGATGTAATCCTGCAGGACGTTGTCGAGGAAGCGCATCACGTCCTCGACGAAGCCCT 170 Query 85098 GGTGATCCCGCCACTCCGGCCACTTCTCGGCGTTGACGCTGGAGAGGCAGCAGACGGCGG 85157 | ||| ||||| |||| ||||| ||||| || ||||||||||| |||| Sbjct 169 TCTCGTCCTTCCACTGGTCCCACGTCTCGAGGTTGAGCGACGACAGGCAGCAGACCGCGG 110 Query 85158 TCCGCATCTTGCCGAAGAT-GTCGCGGCCCGAGCCCAGCATGATCTC 85203 | || |||||| |||| |||||| ||| | |||| ||||||| Sbjct 109 TGCGGTCGTTGCCG-AGATGGTCGCGTGCCGGTCGCAGCGTGATCTC 64 >seq37656 Length=523 Score = 206 bits (228), Expect = 4e-48 Identities = 274/370 (74%), Gaps = 13/370 (4%) Strand=Plus/Plus Query 137581 GTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC-GGCAGGCCCGACG 137639 |||||||||||||||||||||||| || | || || ||||| ||| | | || Sbjct 1 GTAGTTGTGGTGGCAGTTCACCGCCTCGGCCTGCGCCTCGAACGCTTGGCGATCAC--CG 58 Query 137640 CCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCT 137699 || | ||||| | || | | |||||| |||||||||||||||||||| || || Sbjct 59 TGCGGACCGCCTCGACCACGCTGCGCATCATGATCTCGCGGTTGATCCGCGCATAGCGCT 118 Query 137700 GGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCC-GGCTCGCCTTC--GCAGAGCC 137756 | ||||| | || || |||||||||| | | | | |||| |||||| ||||| Sbjct 119 GCGCCCAGTCCACCGCGAACACGTAGTCGCCGTAGTGCTGGCT-GCCTTCCGGCAGAT-- 175 Query 137757 AAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATCATCTCCTTGGCCT 137816 | || ||||||| |||| || | ||| | || | |||| |||| ||||||||| Sbjct 176 AGGCCAGGTCCTGGTCCGGCAGGTTGATCA--TC-CAGCGCCGCATTTCCTCCTTGGCAA 232 Query 137817 TCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCA 137876 || ||||||| | |||||| | ||||||||||||||||| |||||||| ||||||| Sbjct 233 GCTGGATGAAGTGGTTGCCGATCGCATTGCCGACGCCGCGCGA-CCCGAGTGCAGCATCA 291 Query 137877 CCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGG 137936 |||| || ||| || ||||||||||| | |||||||||||||||||| ||||||| | Sbjct 292 CCCACACCCGCGCCTCTTCGTCGAGGCACAGCTCGATGAAGTGGTTGCCACCGCCCAACG 351 Query 137937 TGCCCAGTTG 137946 ||||||| || Sbjct 352 TGCCCAGCTG 361 >seq8838 Length=703 Score = 181 bits (200), Expect = 2e-40 Identities = 287/406 (71%), Gaps = 18/406 (4%) Strand=Plus/Plus Query 83520 CTCTCGTCGCGGATCGACCACTCGACGATCGTGGTCATGCCCTTCATGCGGTTGCGGCGC 83579 ||||||||||| | |||||| ||||||| | |||||||||||| |||| |||| Sbjct 283 CTCTCGTCGCGCACCGACCAGCTGACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGC 342 Query 83580 TGGAAGGACATCAGCAGGGCGAAGGACGAGAAAAGCTGCATCCCCTCGCCGAAGGCCGAG 83639 ||||| |||||||| |||||||||| ||| |||| || |||||| |||| | | Sbjct 343 GGGAAGTTCATCAGCATCGCGAAGGACGCGAACAGCTTCACGCCCTCGGTGAAGCCGCCG 402 Query 83640 AACACGGCGATGTCGACCATCAGGTCGGCGATCGAGTTGCCGCTGTC----CCGA-TTGA 83694 |||| ||| || | | ||||||| | | ||||||| |||| || Sbjct 403 AACATGGC---------CAGC-GTACGGCGATGTCCTCGTCGCTGTCGACGCCGAATTCT 452 Query 83695 ACATGTACTCGTGCTTCTCGCGCATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCT 83754 |||||| || ||||| || |||| | | || ||||||||||||| | ||||| || Sbjct 453 GCATGTAATCATGCTTGTCCTTCATCTCGCCATATTCGAGGAAGGCGCCGTACTCGCTCT 512 Query 83755 CGGGCAGGCCCAGGGTGTCGATCAGCGT-CGAGTAGGCGTCGATGTGGTTGGCCTCGGCG 83813 |||||| ||| | ||||||| ||| || |||||| || ||||||| | ||| | Sbjct 513 CGGGCATGCCGATCGTGTCGAGCAGGGTGCGAGTAAGCCGCGATGTGCACCGTCTCCATG 572 Query 83814 GCGATGAACGCGCCCAGCATCATCCGCACTTCCGGGTGCGGGAA-GCGCGGGCCGTACTT 83872 | |||||||| |||||||||| | || | || ||| ||| ||||||| || Sbjct 573 TTGCTGAACGCGGTCAGCATCATCTTGATCTCGGTCGGCTTGAACACGC-GGCCGTATTT 631 Query 83873 CTCGAAGTAGCCGCGCGCCACGTCGACGTCGGCCTGGGTGAAGAAC 83918 |||| ||||| | | ||| |||||||||||||||||||||||| Sbjct 632 CTCGTGGTAGCAGTCCTGCACCTCGACGTCGGCCTGGGTGAAGAAC 677 >seq98211 Length=569 Score = 159 bits (176), Expect = 5e-34 Identities = 373/545 (68%), Gaps = 32/545 (6%) Strand=Plus/Minus Query 84571 GAAGTGCTGGATCGAGCCCTCGGCCGCGACGATCGACTTCCAGACCGCCTCGGTGTCCAG 84630 || |||||| | ||| || || | ||| |||||| ||||||| || ||| ||| | Sbjct 556 GAGGTGCTGCACCGACCCGCCGTGCTCGAGGATCGAATTCCAGATCGTGTCGCTGTTCTT 497 Query 84631 GCCCAGTTCGCCCAGGCGCTTCTTCAGCCAGCGGTTCTTGACGGCGAACGAGCCCGACAG 84690 || | |||| ||| |||| | ||| | |||||||||| ||||| ||||||||| Sbjct 496 GCTCTTCTCGCTCAGCAGCTT-TCCAGATACGGGTTCTTGACCGCGAAGCTGCCCGACAG 438 Query 84691 GGTCTTGTGCAGGAAGGTGTTGGCCGGGATCGGCTCGATCGACGGCG-AGGTGCCCCCGC 84749 |||||||| | || | |||||||||||||||||||| | |||| |||||| |||| Sbjct 437 CGTCTTGTGGGTGTAGATATTGGCCGGGATCGGCTCGAT-GCAGGCGCTGGTGCCGCCGC 379 Query 84750 AGAGGATCGAGGACGAGGCGTTGGGCGCCACGGCCAGCTTG-TGGGCGAACCGCTCGCCC 84808 ||| ||||||| ||| ||| | ||||| | |||| |||| | ||||||||| || Sbjct 378 AGATGATCGAGATCGACGCGGTCGGCGCGATCGCCATCTTGCAGCTCGAACCGCT--CCA 321 Query 84809 GTGCCTTCCA-TGTC--CGGCGCCTCG--------CCGCGCTCCTTGCCCAGCAGCAGGG 84857 || | ||| |||| ||||| ||| |||||||| || | || ||| | Sbjct 320 GTCACGCCCAGTGTCGGCGGCG-ATCGGGGCAGGCCCGCGCTCGGTGGCGAGGTGCATCG 262 Query 84858 AAGCCGCGTCGGCCTG---CTTGCGCATGTGGACGAAC-AGTTC-CAGGTTCAGCCGGCG 84912 | ||| |||| |||| |||| | ||| |||| ||| | ||||||| | Sbjct 261 ACGCCTCGTCCACCTGCGCCTTG---ACGTGCTTGAACGAGTGCGCAGGTTCCACGACTT 205 Query 84913 GGCGGCGTG-ACTCTCGAACGGGATGTCCAGCATCTGGAGCAGCGAGTG-GAAGCCGAGC 84970 ||| | | | |||||| || | | || |||||| | ||| | ||| | Sbjct 204 GGCCACTCGCGCCCTCGAAGGGCAGACCGCGCGCCTGGAGGAAGCTGTGCCAGGCCCATG 145 Query 84971 AGGCCCAGGCCCACCGACCGTTCGCGCACGGCGCTGTAGGCGGCGCGGTGCATCTC--GT 85028 | |||||||||||||||||| |||||| ||||| ||||||||||| | |||| | | Sbjct 144 ACGCCCAGGCCCACCGACCGCTCGCGCGCGGCGGAATAGGCGGCGCGCTCCATCCCCGGC 85 Query 85029 CCGGCGCGTTGTCGATGAACACCTGGAGGCAGTTGTCCAGCATGCGCAGCAGGTCTTCGA 85088 ||||||| ||||| | ||||||| ||||| || | |||| || ||| |||| Sbjct 84 TCGGCGCG--ATCGATATAGTCCTGGAGCACATTGTCGAGGAACCGCATCACGTCCTCGA 27 Query 85089 TGAAG 85093 ||||| Sbjct 26 TGAAG 22 >seq35885 Length=611 Score = 143 bits (158), Expect = 4e-29 Identities = 254/368 (69%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 83717 CATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGGTGTCGAT 83776 |||| ||| ||| | ||||| || || |||| ||||| |||| ||| | |||||||| Sbjct 606 CATCTCCTGGTACTTCAGGAACGCCTGGTACTCCACCTCCGGCATGCCGATGGTGTCGAG 547 Query 83777 CAGCGTCGAGTAGGCGTCGATGTGGTTGGCCTCGGCGGCGATGAACGCGCCCAGCATCAT 83836 ||| ||| ||||| |||||||| ||| |||| | | |||||| ||||||||| Sbjct 546 CAGATGCGAATAGGCCGCGATGTGGATGGTCTCGATGTTGGAGAACGCCGACAGCATCAT 487 Query 83837 CCGCACTTCCGGGTGCGGGAAGCGCGGGCCGTACTTCTCGAAGTAGCCGCGCGCCACGTC 83896 | ||||||| | | || || | ||| ||| | || | |||| ||| ||| || Sbjct 486 CAGCACTTCGGTGGGCTTAAACACCTGGCTGTAGTGCTTCATGTAGGCGCTGTTCACCTC 427 Query 83897 GACGTCGGCCTGGGTGAAGAACCGGAAGAGTTGCGTCAGCAGGGACTTCTCGTCCGGCGT 83956 |||||| ||||| |||||||| ||||||| |||||||||||| ||||| || Sbjct 426 GACGTCCGCCTGCGTGAAGAAGCGGAAGATCTGCGTCAGCAGGTTGCGCTCGTGATCGGT 367 Query 83957 CAGCTTCTCGTTCCAGTCCTGGATGTCCTGGTCCATGGGGGCTTCGTGCGGAAGCCAGTG 84016 |||||||| |||||| || |||| | ||| || | || | || | |||||| Sbjct 366 CAGCTTCTGCGCCCAGTCGCGGCAATCCTCGCCCAGCGGCACCTCTTCGGGCATCCAGTG 307 Query 84017 CATGGCCTGCATGGTCTTGTAGGCCTCATAGGCCCAGGGGTAGACGAACGGCTTGTAGTA 84076 || |||| | ||| | | || | ||||||||||| |||||||||| || | Sbjct 306 GATCTGCTGCTGGCGCTTCCA-GAATC-GACGCCCAGGGGTATTCGAACGGCTTATACTG 249 Query 84077 GTCGCGGG 84084 | ||||| Sbjct 248 CTTGCGGG 241 >seq75989 Length=485 Score = 105 bits (116), Expect = 9e-18 Identities = 109/139 (78%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 138092 CCGTGCGGGACGGCGTGCTCGATCAGCG-AGCGAAGCTTGGACAGGCTGTCGGGGAGGTC 138150 |||||||| ||||| | |||||| ||| |||| || | |||| |||| || ||||| Sbjct 40 CCGTGCGGCACGGCTTTCTCGATG-GCGCAGCGCAGGCCGTGCAGGTTGTCCGGCAGGTC 98 Query 138151 CGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGC 138210 | ||||||| ||||||| | || ||||| |||||||||||||| ||||| ||||| Sbjct 99 GGCGCCGGTCAGCGTGGTGCGCGCGGCGATCATCCCGCAGCCGATGTCCACGCC-ACGGC 157 Query 138211 GGCCGGGATGATCGCGCCC 138229 || ||||||||||||||| Sbjct 158 AGCAGGGATGATCGCGCCC 176 >seq96425 Length=706 Score = 96.9 bits (106), Expect = 5e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 149682 ATCTGCTCGACGTTGAACACCAGATAGGACTTCAGGAACGGGATCATCCGCTCGACGTCC 149741 |||||||||||||| || ||| ||||| |||||||||||||||| ||| ||||| || Sbjct 1 ATCTGCTCGACGTTAAATACCGAATAGGCCTTCAGGAACGGGATCTCCCGATCGACCTCG 60 Query 149742 TTGCCGTTCGAGTCCTTCTCGGTCTTCTTGAACTTGGAGGCGTAGACGATCAGTTCGGAC 149801 ||||||||| |||| |||| ||| |||| | |||| |||||| | || | | Sbjct 61 TTGCCGTTCCCGTCCGCTTCGGACTTGGTGAATCGGCTGGCGAAGACGA-CGGTCGAGCC 119 Query 149802 -TTCTCGCCCTTGCGGACCTGACCACCCAGGTCCCTGGCTTGGTTGTAGGTCATCCAGGT 149860 | ||||||||||| || || || | || || ||| ||| | |||||||| | Sbjct 120 GGTTTCGCCCTTGCGCACGGCCCCGCCGATTTCGAGGGATTGCTTGAACGTCATCCACAT 179 Query 149861 TGGGTTGGTGTAACCGCGCTCCTGCGCGGCGGCCCACAGGAGGACCACGTTGATCCC 149917 | | || | | |||||| | | | | ||| ||||||| |||||| || || Sbjct 180 CGAGGAGGCGAAGCCGCGCGACATCTGCTCCGACCATAGGAGGAGCACGTTAATGCC 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708565640944000