Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq55576 300 2e-76 seq37656 206 4e-48 seq33294 206 4e-48 seq8838 172 8e-38 seq98211 156 6e-33 seq35885 127 3e-24 seq75989 100 4e-16 seq96425 98.7 1e-15 >seq55576 Length=704 Score = 300 bits (332), Expect = 2e-76 Identities = 446/619 (72%), Gaps = 15/619 (2%) Strand=Plus/Minus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCCCT-CGGTGGCCTTGATCTGGTCCTCC-AGG 136135 |||| |||||||||||||||| ||||| | | ||||| |||||| |||| | | | Sbjct 611 CACGTCGGCGTCCTTGCGGCATTCCACACTGAGCCGTGGCGCGGATCTGATCCTTCGATG 552 Query 136136 GTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAG 136195 |||||| | ||| |||| ||| || ||| || || || |||||||| ||| ||| Sbjct 551 GTGAAGACCTTCTTCGCCTTGGTTCGGCTCATGGTGCGCCCGGCGCCGTGGCTGCAGGAG 492 Query 136196 CAGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCG 136255 ||||||| ||| |||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct 491 CAGAACGCCTCCTCGTTACCCAGGCCGCGCACGATGTAGCTCTTGGCGCCCATGGAGCCG 432 Query 136256 GGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACC 136315 |||||||| || | | | |||||| ||| ||||||||||| || ||||| || | ||| Sbjct 431 GGGATGATGCCCAGTTCGCCCTTCTTCGCTGACACCGCGCCTTTACGGGTTACCAGCACC 372 Query 136316 CACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTG 136375 || ||||||| ||||||||| ||||||||||||||||||||||| || ||| | Sbjct 371 TCTTCACCGAAGTGACGTTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACTGCCTCCAGG 312 Query 136376 TCCGTCTTGAACGGCGGCAGGCCCGACGCTCGCATG--GCCTCCAGGACCCGGACCATCA 136433 || || |||||| | | | |||| ||| || ||| | | ||| ||||| Sbjct 311 GCCACCTCGAACGGTTTGACGATC-ACGC-CGCGTGCCGCCGCGATCACCGCATGCATCA 254 Query 136434 TCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGT 136493 ||| | ||||||| | ||||||||||| ||||| | || |||||||| ||||| | Sbjct 253 TCAGCGCGCGGTTCTGCTTGGCGAAGTCCTGCGCCCAGCCCACAGCTTCCACATAGTCAT 194 Query 136494 GGAACT-CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTACGCCCG 136552 ||| | | |||| |||||| || | || ||||| ||| || | || | Sbjct 193 CGAAGTGCTGGCT-GCCTTCCTCGAAGTAGGCCAGGTCACGATCCGGCAGGTTGGCGATG 135 Query 136553 TCACGGCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCG 136612 | |||||| ||| ||| |||| |||||||| | | |||||||| ||| || Sbjct 134 TGCTGGCGCA-TATC--GGCCTGGGCCAGTTCGATGAACAGGTTGCCGATGGCGTTACCC 78 Query 136613 ACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCG--CTGGTCCTCGTCGAGGCAGA 136670 || |||||||| || ||| ||||| | ||||||||| ||| | || || ||||||| Sbjct 77 ACACCGCGCGAACCGCTGTGCAGCATGAACCAGACGCGGCCTG--CTTCATCCAGGCAGA 20 Query 136671 CCTCGATGAAGTGGTTGCC 136689 | |||||||| |||||||| Sbjct 19 CTTCGATGAAATGGTTGCC 1 >seq37656 Length=523 Score = 206 bits (228), Expect = 4e-48 Identities = 274/370 (74%), Gaps = 13/370 (4%) Strand=Plus/Plus Query 136345 GTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC-GGCAGGCCCGACG 136403 |||||||||||||||||||||||| || | || || ||||| ||| | | || Sbjct 1 GTAGTTGTGGTGGCAGTTCACCGCCTCGGCCTGCGCCTCGAACGCTTGGCGATCAC--CG 58 Query 136404 CTCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCT 136463 || | ||||| | || | | |||||| |||||||||||||||||||| || || Sbjct 59 TGCGGACCGCCTCGACCACGCTGCGCATCATGATCTCGCGGTTGATCCGCGCATAGCGCT 118 Query 136464 GGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCC-GGCTCGCCTTC--GCAGAGCC 136520 | ||||| | || || |||||||||| | | | | |||| |||||| ||||| Sbjct 119 GCGCCCAGTCCACCGCGAACACGTAGTCGCCGTAGTGCTGGCT-GCCTTCCGGCAGAT-- 175 Query 136521 AAGCAAGGTCCTTGTCCAGCGGCTTACGCCCGTCACGGCGCAGCATCATCTCCTTGGCCT 136580 | || ||||||| |||| || | || | | || | |||| |||| ||||||||| Sbjct 176 AGGCCAGGTCCTGGTCCGGCAGGTT--GATCATC-CAGCGCCGCATTTCCTCCTTGGCAA 232 Query 136581 TCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCA 136640 || ||||||| | |||||| | ||||||||||||||||| |||||||| ||||||| Sbjct 233 GCTGGATGAAGTGGTTGCCGATCGCATTGCCGACGCCGCGCGA-CCCGAGTGCAGCATCA 291 Query 136641 CCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGG 136700 |||| || ||| || ||||||||||| | |||||||||||||||||| ||||||| | Sbjct 292 CCCACACCCGCGCCTCTTCGTCGAGGCACAGCTCGATGAAGTGGTTGCCACCGCCCAACG 351 Query 136701 TGCCCAGTTG 136710 ||||||| || Sbjct 352 TGCCCAGCTG 361 >seq33294 Length=727 Score = 206 bits (228), Expect = 4e-48 Identities = 442/647 (68%), Gaps = 24/647 (4%) Strand=Plus/Minus Query 83728 GAAGTGCTGGATCGACCCCTCGGCCGCGACGATCGACTTCCAGACCGCCTCGGTGTCCAG 83787 || |||||||| |||||| | | ||| |||||| |||| || || || | ||| Sbjct 700 GAGGTGCTGGACCGACCCGCCATGCTCGAGGATCGAGCTCCACACGGCTTCCGAATCCTT 641 Query 83788 GCCCAGTTCGCCCAGGCGCTTCTTCAGCCAGCGGTTCTTGACGGCGAACGAGCCCGACAG 83847 | ||| ||||| ||||||||| | |||||||||| ||||| ||||||||| Sbjct 640 CGACTTCTCGGCCAGGATCTTCTTCAGATACGGGTTCTTGACCGCGAAGCTGCCCGACAG 581 Query 83848 GGTCTTGTGCAGGAAGGTGTTGGCCGGGATCGGCTCGATCGACGGCGA-GGTGCCCCCGC 83906 |||||||| | || | |||||||||||||||||||| | |||| |||||| |||| Sbjct 580 CGTCTTGTGGGTGTAGATATTGGCCGGGATCGGCTCGATGCA-GGCGCTGGTGCCGCCGC 522 Query 83907 AAAGGATCGAGGACGAGGCGTTGGGCGCCACGGCCAGCTTGTGGGCGAACCGCTCGCCCG 83966 | | ||||||| ||| ||| | ||||| | |||| |||| | | || ||||| | Sbjct 521 AGATGATCGAGATCGACGCGGTCGGCGCGATCGCCATCTTGCAG-CTAAGCGCTC---CA 466 Query 83967 TGCCTTCCATGTC--CGGCGCCTCG-------CCGCGCTCCTTGCCCAGCAGCAGGGAAG 84017 || | | | ||| ||||| | | ||||||||| | | ||| || || | Sbjct 465 TGACGCCGACGTCGGCGGCGTCCGGGCACGGCCCGCGCTCCGCGGCGAGCGTCATCGACG 406 Query 84018 CCGCATCGGCCTGCTTGCGCATGTGGACGAACAGTTCCAGGTTC-AGCCGGCGGGCGGCG 84076 || | ||||| | ||||| ||||| ||||||| ||| || | || Sbjct 405 CCTGGTTCACCTGCGCGTTGATGTGCTTGAACATGCGCAGGTTCCAGCTCTTGGCCATCG 346 Query 84077 TGACTCTCGAACGGGATGTCCAGCATCTGGAGCAGCGAGTGGAAGCCGAGCAGGCCCAGG 84136 | | ||||||||| | | || ||| || | |||||||||||| | || |||||| Sbjct 345 CGCC-CTCGAACGGCAGCCCGCGCG-CTGCAGGAACGAGTGGAAGCCCATCACGCCCAGA 288 Query 84137 CCCACCGACCGTTCGCGCACGGCGCTGTAGGCGGCGCGGTGCAT--CTCGTCCGGCGCGT 84194 |||||||| || |||||| | ||||| ||||| ||||| | ||| | || || ||| Sbjct 287 CCCACCGAGCGCTCGCGCGCCGCGCTATAGGCCGCGCGCTCCATGCCGGGTTCGTGGCG- 229 Query 84195 TGTCGATGAACACCTGGAGGCAGTTGTCCAGCATGCGCAGCAGGTCTTCGATGAAGGTCG 84254 ||||||| | |||| ||| |||||| || | ||||| || ||| |||| |||| | Sbjct 228 -GTCGATGTAATCCTGCAGGACGTTGTCGAGGAAGCGCATCACGTCCTCGACGAAGCCCT 170 Query 84255 GGTGATCCCGCCACTCCGGCCACTTCTCGGCGTTGACGCTGGAGAGGCAGCAGACGGCGG 84314 | ||| ||||| |||| ||||| ||||| || ||||||||||| |||| Sbjct 169 TCTCGTCCTTCCACTGGTCCCACGTCTCGAGGTTGAGCGACGACAGGCAGCAGACCGCGG 110 Query 84315 TCCGCATCTTGCCGAAGAT-GTCGCGGCCCGAGCCCAGCATGATCTC 84360 | || |||||| |||| |||||| ||| | |||| ||||||| Sbjct 109 TGCGGTCGTTGCCG-AGATGGTCGCGTGCCGGTCGCAGCGTGATCTC 64 >seq8838 Length=703 Score = 172 bits (190), Expect = 8e-38 Identities = 284/406 (70%), Gaps = 18/406 (4%) Strand=Plus/Plus Query 82677 CTCTCGTCGCGGATCGACCACTCGACGATCGTGGTCATGCCCTTCATGCGGTTGCGGCGC 82736 ||||||||||| | |||||| ||||||| | |||||||||||| |||| |||| Sbjct 283 CTCTCGTCGCGCACCGACCAGCTGACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGC 342 Query 82737 TGGAAGGACATCAGCAGGGCGAAGGACGAGAAAAGCTGCATCCCCTCCCCGAAGGCCGAG 82796 ||||| |||||||| |||||||||| ||| |||| || ||||| |||| | | Sbjct 343 GGGAAGTTCATCAGCATCGCGAAGGACGCGAACAGCTTCACGCCCTCGGTGAAGCCGCCG 402 Query 82797 AACACGGCGATCTCGACCATCAGGTCGGCGATCGAGTTGCCGCTGTC----CCGA-TTGA 82851 |||| ||| | | | ||||||| | | ||||||| |||| || Sbjct 403 AACATGGCCAGC----------GTACGGCGATGTCCTCGTCGCTGTCGACGCCGAATTCT 452 Query 82852 ACATGTACTCGTGCTTCTCGCGCATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCT 82911 |||||| || ||||| || |||| | | || ||||||||||||| | ||||| || Sbjct 453 GCATGTAATCATGCTTGTCCTTCATCTCGCCATATTCGAGGAAGGCGCCGTACTCGCTCT 512 Query 82912 CGGGCAGGCCCAGGGTGTCGATCAGCGT-CGAGTAGGCGTCGATATGGTTGGCCTCGGCG 82970 |||||| ||| | ||||||| ||| || |||||| || |||| || | ||| | Sbjct 513 CGGGCATGCCGATCGTGTCGAGCAGGGTGCGAGTAAGCCGCGATGTGCACCGTCTCCATG 572 Query 82971 GCGATGAACGCGCCCAGCATCATCCGCACTTCCGGGTGCGGGAA-GCGCGGGCCGTACTT 83029 | |||||||| |||||||||| | || | || ||| ||| ||||||| || Sbjct 573 TTGCTGAACGCGGTCAGCATCATCTTGATCTCGGTCGGCTTGAACACGC-GGCCGTATTT 631 Query 83030 CTCGAAGTAGCCGCGCGCCACGTCGACGTCGGCCTGGGTGAAGAAC 83075 |||| ||||| | | ||| |||||||||||||||||||||||| Sbjct 632 CTCGTGGTAGCAGTCCTGCACCTCGACGTCGGCCTGGGTGAAGAAC 677 >seq98211 Length=569 Score = 156 bits (172), Expect = 6e-33 Identities = 372/545 (68%), Gaps = 32/545 (6%) Strand=Plus/Minus Query 83728 GAAGTGCTGGATCGACCCCTCGGCCGCGACGATCGACTTCCAGACCGCCTCGGTGTCCAG 83787 || |||||| | |||||| || | ||| |||||| ||||||| || ||| ||| | Sbjct 556 GAGGTGCTGCACCGACCCGCCGTGCTCGAGGATCGAATTCCAGATCGTGTCGCTGTTCTT 497 Query 83788 GCCCAGTTCGCCCAGGCGCTTCTTCAGCCAGCGGTTCTTGACGGCGAACGAGCCCGACAG 83847 || | |||| ||| |||| | ||| | |||||||||| ||||| ||||||||| Sbjct 496 GCTCTTCTCGCTCAGCAGCTT-TCCAGATACGGGTTCTTGACCGCGAAGCTGCCCGACAG 438 Query 83848 GGTCTTGTGCAGGAAGGTGTTGGCCGGGATCGGCTCGATCGACGGCG-AGGTGCCCCCGC 83906 |||||||| | || | |||||||||||||||||||| | |||| |||||| |||| Sbjct 437 CGTCTTGTGGGTGTAGATATTGGCCGGGATCGGCTCGAT-GCAGGCGCTGGTGCCGCCGC 379 Query 83907 AAAGGATCGAGGACGAGGCGTTGGGCGCCACGGCCAGCTTG-TGGGCGAACCGCTCGCCC 83965 | | ||||||| ||| ||| | ||||| | |||| |||| | ||||||||| || Sbjct 378 AGATGATCGAGATCGACGCGGTCGGCGCGATCGCCATCTTGCAGCTCGAACCGCT--CCA 321 Query 83966 GTGCCTTCCA-TGTC--CGGCGCCTCG--------CCGCGCTCCTTGCCCAGCAGCAGGG 84014 || | ||| |||| ||||| ||| |||||||| || | || ||| | Sbjct 320 GTCACGCCCAGTGTCGGCGGCG-ATCGGGGCAGGCCCGCGCTCGGTGGCGAGGTGCATCG 262 Query 84015 AAGCCGCATCGGCCTG---CTTGCGCATGTGGACGAAC-AGTTC-CAGGTTCAGCCGGCG 84069 | ||| | || |||| |||| | ||| |||| ||| | ||||||| | Sbjct 261 ACGCCTCGTCCACCTGCGCCTTG---ACGTGCTTGAACGAGTGCGCAGGTTCCACGACTT 205 Query 84070 GGCGGCGTG-ACTCTCGAACGGGATGTCCAGCATCTGGAGCAGCGAGTG-GAAGCCGAGC 84127 ||| | | | |||||| || | | || |||||| | ||| | ||| | Sbjct 204 GGCCACTCGCGCCCTCGAAGGGCAGACCGCGCGCCTGGAGGAAGCTGTGCCAGGCCCATG 145 Query 84128 AGGCCCAGGCCCACCGACCGTTCGCGCACGGCGCTGTAGGCGGCGCGGTGCATCTC--GT 84185 | |||||||||||||||||| |||||| ||||| ||||||||||| | |||| | | Sbjct 144 ACGCCCAGGCCCACCGACCGCTCGCGCGCGGCGGAATAGGCGGCGCGCTCCATCCCCGGC 85 Query 84186 CCGGCGCGTTGTCGATGAACACCTGGAGGCAGTTGTCCAGCATGCGCAGCAGGTCTTCGA 84245 ||||||| ||||| | ||||||| ||||| || | |||| || ||| |||| Sbjct 84 TCGGCGCG--ATCGATATAGTCCTGGAGCACATTGTCGAGGAACCGCATCACGTCCTCGA 27 Query 84246 TGAAG 84250 ||||| Sbjct 26 TGAAG 22 >seq35885 Length=611 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 82874 CATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGGTGTCGAT 82933 |||| ||| ||| | ||||| || || |||| ||||| |||| ||| | |||||||| Sbjct 606 CATCTCCTGGTACTTCAGGAACGCCTGGTACTCCACCTCCGGCATGCCGATGGTGTCGAG 547 Query 82934 CAGCGTCGAGTAGGCGTCGATATGGTTGGCCTCGGCGGCGATGAACGCGCCCAGCATCAT 82993 ||| ||| ||||| |||| ||| ||| |||| | | |||||| ||||||||| Sbjct 546 CAGATGCGAATAGGCCGCGATGTGGATGGTCTCGATGTTGGAGAACGCCGACAGCATCAT 487 Query 82994 CCGCACTTCCGGGTGCGGGAAGCGCGGGCCGTACTTCTCGAAGTAGCCGCGCGCCACGTC 83053 | ||||||| | | || || | ||| ||| | || | |||| ||| ||| || Sbjct 486 CAGCACTTCGGTGGGCTTAAACACCTGGCTGTAGTGCTTCATGTAGGCGCTGTTCACCTC 427 Query 83054 GACGTCGGCCTGGGTGAAGAACCGGAAGAGTTGCGTCAGCAGG 83096 |||||| ||||| |||||||| ||||||| |||||||||||| Sbjct 426 GACGTCCGCCTGCGTGAAGAAGCGGAAGATCTGCGTCAGCAGG 384 >seq75989 Length=485 Score = 100 bits (110), Expect = 4e-16 Identities = 108/139 (78%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 136856 CCGTGCGGGACGGCGTGCTCGATCAGCG-AGCGAAGCTTGGCGAGGCTGTCGGGAAGGTC 136914 |||||||| ||||| | |||||| ||| |||| || | ||| |||| || ||||| Sbjct 40 CCGTGCGGCACGGCTTTCTCGATG-GCGCAGCGCAGGCCGTGCAGGTTGTCCGGCAGGTC 98 Query 136915 CGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGC 136974 | ||||||| ||||||| | || ||||| |||||||||||||| ||||| ||||| Sbjct 99 GGCGCCGGTCAGCGTGGTGCGCGCGGCGATCATCCCGCAGCCGATGTCCACGCC-ACGGC 157 Query 136975 GGCCGGGATGATCGCGCCC 136993 || ||||||||||||||| Sbjct 158 AGCAGGGATGATCGCGCCC 176 >seq96425 Length=706 Score = 98.7 bits (108), Expect = 1e-15 Identities = 170/240 (71%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 148455 ATCTGCTCGACATTGAACACCAGATAGGACTTCAGGAACGGGATCATCCGTTCGACGTCC 148514 ||||||||||| || || ||| ||||| |||||||||||||||| ||| ||||| || Sbjct 1 ATCTGCTCGACGTTAAATACCGAATAGGCCTTCAGGAACGGGATCTCCCGATCGACCTCG 60 Query 148515 TTGCCGTTGGCGTCCTTCTCGGTCTTCTTGAACTTCG--AGGCGTAGACGATCAGTTCGG 148572 |||||||| ||||| |||| ||| |||| ||| |||| |||||| | || | Sbjct 61 TTGCCGTTCCCGTCCGCTTCGGACTTGGTGAA--TCGGCTGGCGAAGACGA-CGGTCGAG 117 Query 148573 AC-TTCTCGCCCTTGCGGACCTGACCACCCAGGTCCCTGGCTTGGTTGTAGGTCATCCAG 148631 | | ||||||||||| || || || | || || ||| ||| | |||||||| Sbjct 118 CCGGTTTCGCCCTTGCGCACGGCCCCGCCGATTTCGAGGGATTGCTTGAACGTCATCCAC 177 Query 148632 GTCGGGTTGGTGTAGCCGCGC-TCCTGGGCGGCGGCCCACAGGAGGACCACGTTGATCCC 148690 ||| | || | |||||||| | | || | | ||| ||||||| |||||| || || Sbjct 178 ATCGAGGAGGCGAAGCCGCGCGACATCTGC-TCCGACCATAGGAGGAGCACGTTAATGCC 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700220854688000