Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019417.1 Length=59203 Score E Sequences producing significant alignments: (Bits) Value seq60383 179 1e-40 seq76547 120 1e-22 seq98424 113 2e-20 seq129722 91.5 6e-14 >seq60383 Length=344 Score = 179 bits (198), Expect = 1e-40 Identities = 201/266 (76%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 42107 CAGCCTGCGCCGCCATCCATTCCCACGTATTTTCGTGCATGGCGCGGTGTTTCATCAGCA 42166 |||||||||||| | | |||||||| || |||||||||| || ||||| ||||| |||| Sbjct 262 CAGCCTGCGCCGTCCTGCATTCCCATGT-GTTTCGTGCATCGCACGGTGCTTCATAAGCA 204 Query 42167 GATATGCGATGACACGGTCGCGGCGCTGCGCGATAGACAGGGTGCCAGTACCCAACG--C 42224 | |||||||| |||||||| |||||||| | | |||||| || ||||| ||| | Sbjct 203 GGTATGCGATAACACGGTCACGGCGCTGAGACAGAGACAGCGTACCAGT---GTACGGTC 147 Query 42225 TTCACCCGGCTGACGCGGGATGATCATGTTAGGGTCGATGACGTGTTTCGGCTTCACGTA 42284 ||| || ||||| ||||| |||| ||| || ||||| ||||| || || || ||||| Sbjct 146 TTCGCCTGGCTGCACAGGGATAATCAGGTTTGGATCGATAACGTGCTTAGGTTTAACGTA 87 Query 42285 GGCAGGTTTAAAAGTCTTCGTGTTGTAGCCGCTTTCTTTGATCACGCGGCCCTGTACGTT 42344 ||||| || || | ||| | | |||| ||||||||| |||||||||| ||||| Sbjct 86 AGCAGGCTTGAATCGCATCGCGGTCCAGCCTTCTTCTTTGATAACGCGGCCCTCGACGTT 27 Query 42345 AGGTGCAACGAACGGAGCGACGCGGG 42370 || || ||| | || || ||||||| Sbjct 26 CGGCGCCACGTAAGGTGCTACGCGGG 1 >seq76547 Length=445 Score = 120 bits (132), Expect = 1e-22 Identities = 239/349 (68%), Gaps = 14/349 (4%) Strand=Plus/Plus Query 43778 CGCCAACGCATATGCCGCAGAATAGCAGTTTGAATCGACAACCGCCAGCGAAGGTTTCTC 43837 || || ||| ||||| || ||||| ||||| | ||| || ||||||| || || || || Sbjct 12 CGACAGCGCGTATGCTGCTGAATAACAGTTCGCATCCACGACCGCCATCGTTGGCTTTTC 71 Query 43838 GCCGCGTGTATCAAACATTTCCTGTGACA-GCTCGAAACAGCCTGCTGCTTCCCCGCCGT 43896 | | | | ||| || | || |||| ||||| || | ||| | || || | Sbjct 72 GAGGTTGGCG------AGTTC-TGCGGCAAGCTCAAAACAACCGGATGCCTGACCACCAT 124 Query 43897 TCGAGTTAACGTCGTAGATGATAGCCTCGACATCCGGGTCGGCCAGCGCTGC-ATTACG- 43954 | ||| || || | || ||| ||||||||| ||| ||| || || | | | Sbjct 125 TACTGTTCACATCAAAAATAATACGCTCGACATCA---TCGTCCATTGCCGCCAGTGCAG 181 Query 43955 -CTGACTGCGGATAAAATTGTAGCCCGTCACGTAGCCGTAGTAATACCCGCCATAGCGGT 44013 ||||| ||||| || || || || || ||||| || | ||||| || || ||||||| Sbjct 182 CCTGACGACGGATGAAGTTATATCCGGTTACGTACCCAAAATAATAGCCACCGTAGCGGT 241 Query 44014 TAATCAGGGTGCCGTGAATCGGGATGATGGCGAGGCCGTTCGAGAAGGCGAAAGGCTTGT 44073 |||||||| | ||||||||||| ||||||||| ||||| ||| || ||||| |||| Sbjct 242 TAATCAGGCTACCGTGAATCGGAATGATGGCGGTACCGTTAACGAAAGCAAAAGGTTTGT 301 Query 44074 CCGCAGACGGTCGGCCAACGCCGTACGCTGCACACAGGTTTTCGCGCAT 44122 | ||| | | |||||||| |||| | | || || ||| |||||| Sbjct 302 CTGCACTGGCCTGCCCAACGCCATACGTTTCGCAGAGCGTTTTGCGCAT 350 >seq98424 Length=301 Score = 113 bits (124), Expect = 2e-20 Identities = 204/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 30802 ACCAGCATAGCTAACGCCCACCACATAGCGATTCTCCTTAAAAGATTGGGTTGCCGTCGA 30861 |||||||| ||||| |||||||||||||| ||| ||||| |||| ||| |||||||| | Sbjct 292 ACCAGCATGGCTAATGCCCACCACATAGC-TTTCCCCTTAGAAGACTGGATTGCCGTCAA 234 Query 30862 ACGGGGAACGGTCTGGCAGCGACGGGATACCGCCGAAGTTCGCCAGATTGTTGAAGATGG 30921 |||| |||||| |||| || ||| ||||| | || |||| ||||| || Sbjct 233 ACGGCGAACGGGACGGCATTGAGATGATGCCGCCATAATTGTCCAGGTTGTTAAAACGAC 174 Query 30922 TATCACAGGCCGTACTG--GTGCGCGGGCATCCCGGGTAAGTCTTGAGGATGTAGCCCCC 30979 | | || || | ||| ||||||||||| || || ||| ||| | || ||| || Sbjct 173 TCTGGCACGCAG--CTGACGTGCGCGGGCAACCAGGATAAACCTTAATGACCATGCCACC 116 Query 30980 GGCCAAGCCGTCTACGGTACCAAAGATGGTAATGGTATTCCCGGTATGGGTTTCGATGCC 31039 ||||| ||| || || || | | || || |||| || || || ||| | Sbjct 115 GGCCAGTCCGCTGACCACGCCGAA-AACACCAGCGTGTTGTCGGTGTGCGTCTCAATGGC 57 Query 31040 GCGACGTTCCACGCCGTACACCGGATCTATCCACTCGATGAAGCCGCCTGCGAA 31093 ||||||||| ||| | |||||||||||| |||||||| ||||| | ||| Sbjct 56 GCGACGTTCAGTACCGCGCTGCGGATCTATCCATTCGATGAAACCGCCCGTGAA 3 >seq129722 Length=886 Score = 91.5 bits (100), Expect = 6e-14 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 38815 GAAGGTGAAGGACATGACCTGCCAGTCGTCGCCTTTCAGTGCATAATCGCCATCCGGCGC 38874 ||| ||||| ||||| ||||||||||| || || ||||| ||||| |||||||||||| Sbjct 96 GAACGTGAACGACATAACCTGCCAGTCATCACCCTTCAGCGCATAGTCGCCATCCGGCTG 37 Query 38875 GATGGACACTTTCGGGAAGTAGTAGTTCTT 38904 | | ||||||||||||| |||||| ||| Sbjct 36 CAGCGCCACTTTCGGGAAGAAGTAGTCCTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189035050419000