Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019423.1 Length=72570 Score E Sequences producing significant alignments: (Bits) Value seq38457 113 2e-20 seq35061 105 3e-18 seq34527 104 1e-17 seq27013 95.1 6e-15 >seq38457 Length=3703 Score = 113 bits (124), Expect = 2e-20 Identities = 152/207 (73%), Gaps = 11/207 (5%) Strand=Plus/Minus Query 28709 CAATGCTCTTACCTGTTGTGTGCCCA---TTATTAATCACACC---GGGCC--AGTGCGC 28760 ||||||||||||||||||||||||| |||||||||||| | ||||| | ||||| Sbjct 3043 CAATGCTCTTACCTGTTGTGTGCCCTGATTTATTAATCACATCTCAGGGCCGCAATGCGC 2984 Query 28761 CGAATTTGTTTACAAGGAATCGGAAGACCTTGCTGACTTATAGGCTATTACGCCGCCATC 28820 | ||| | ||||| |||| |||| ||| || | | ||| ||| || || | Sbjct 2983 CAGATTCGGTTACATGGAACTGGAATACCATGAAAGCGCGTTGGCCGTTAGGCTGCTACT 2924 Query 28821 AGAACAACATCATCGTTTGCATTTATGTTAT-TGGTTCGTTTCTAAAAAACCACATAATC 28879 || || |||||||||||||| || | |||| |||||||||||| || || | || Sbjct 2923 TTAAACTCACTATCGTTTGCATTTACTTTTTGTGGTCCGTTTCTAAAAACCCGCAAAGTC 2864 Query 28880 GCTTACGAAAACTATC--AAAGAGTAC 28904 || ||||||||||||| |||||| || Sbjct 2863 GCATACGAAAACTATCGGAAAGAGCAC 2837 >seq35061 Length=1748 Score = 105 bits (116), Expect = 3e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 27250 AGATTCTGCTTAAGCAGGTAACCTTCCAGTAACCAGACCTTATCGATTGCATTTTCATAG 27309 || || ||||| |||||||| ||||| ||| ||||| ||| | ||||| || | Sbjct 1508 AGTTTTTGCTTCAGCAGGTAGCCTTCAAGTTGCCAGATTTTACTAACGGCATTGGCACGG 1567 Query 27310 GCAATCTTACGCCCAATTTCTTCGTTGAAGTTTCCCGGGGATGCACAGGCAGACTCACCA 27369 || || |||| || |||||| ||| |||||| ||||| || ||||| ||||| Sbjct 1568 GCGATGCTACGACCTATTTCTGCGTCAAAGTTTTCCGGGCTGGCGCAGGCGCTTTCACCG 1627 Query 27370 GTAACAGTGAAGCCATTCTCCAGAACCAGTACACAGAAAGTCAGCAGAGATAGTGA 27425 || || ||||| || |||| |||||||||||||||||| |||| ||| || ||| Sbjct 1628 GTGACGGTGAATCCGTTCTTCAGAACCAGTACACAGAAGGTCAATAGATTTAATGA 1683 >seq34527 Length=8391 Score = 104 bits (114), Expect = 1e-17 Identities = 150/207 (72%), Gaps = 11/207 (5%) Strand=Plus/Minus Query 28709 CAATGCTCTTACCTGTTGTGTGCCCA---TTATTAATCACACC---GGGCC--AGTGCGC 28760 ||||||||||||||||||||||||| |||||||||||| | ||||| | || || Sbjct 3286 CAATGCTCTTACCTGTTGTGTGCCCTGATTTATTAATCACATCTCAGGGCCGCAATGTGC 3227 Query 28761 CGAATTTGTTTACAAGGAATCGGAAGACCTTGCTGACTTATAGGCTATTACGCCGCCATC 28820 | ||| | ||||| |||| |||| ||| || | | ||| ||| || || | Sbjct 3226 CAGATTCGGTTACATGGAACTGGAATACCATGAAAGCGCGTTGGCCGTTAGGCTGCTACT 3167 Query 28821 AGAACAACATCATCGTTTGCATTTATGTTAT-TGGTTCGTTTCTAAAAAACCACATAATC 28879 || || || ||||||||||| || | |||| |||||||||||| || || | || Sbjct 3166 TTAAACTCACTATTGTTTGCATTTACTTTTTGTGGTCCGTTTCTAAAAACCCGCAAAGTC 3107 Query 28880 GCTTACGAAAACTATC--AAAGAGTAC 28904 || ||||||||||||| |||||| || Sbjct 3106 GCATACGAAAACTATCGGAAAGAGCAC 3080 >seq27013 Length=32742 Score = 95.1 bits (104), Expect = 6e-15 Identities = 155/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 48067 TCTTCAAATGCTTGCATACCTTTCTGGTTCTTACCCCAGTGACTTGGCATCACTGGTTCA 48126 ||||| ||| ||||||||| |||||||||||||| ||| | ||||| ||||| Sbjct 8788 TCTTCTTTTGCCTGCATACCTGGTTGGTTCTTACCCCAATGAATAGGCATTGCTGGTGAT 8729 Query 48127 TTACGAACTTGTTCGATGAACTTAGCAGTGGGGATAGCACGACTACTTGAAGCATTACGG 48186 | ||| | || | | ||||| |||| |||||| ||| ||||||||| Sbjct 8728 TGACGGATAATGTCAAGCATTTTAGCCACAGGGACCGCACGAGAACTCATTGCATTACGG 8669 Query 48187 TTGAATACACGGTGGGTCATAAACTCACTGTGAATGAATCGGGGATAAACCAATTCAAAG 48246 | |||| |||||| |||||||| || | |||||| ||||| ||||| || |||||| Sbjct 8668 CTAAATAAACGGTGAGTCATAAATTCCCCGTGAATATATCGGTGATAAGTCAGTTCAAAT 8609 Query 48247 GTTGTGATACGAGTTCCTGTTTCTGGATGAACGGAATCTGCAA 48289 |||| ||| |||| |||||| ||| |||| |||| Sbjct 8608 GTTGCAATATTTTTTCC---TTCTGGTGAAACAGAATAAGCAA 8569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231730619217300