Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq100029 248 3e-61 seq43257 116 1e-21 >seq100029 Length=517 Score = 248 bits (274), Expect = 3e-61 Identities = 268/355 (75%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 6220 AGCAATTACCCTTGGGCCACCCATGTACTTTCCGTACTCTTCCGTTAACAACGTGAAGTA 6279 ||||||| || | ||||| || || || || || || | || |||||||| || || | Sbjct 517 AGCAATTCCCTGTCGGCCAGCCCTGGACCTTTCGCACCTTGCCATTAACAACATGCAGCA 458 Query 6280 ATCCCCAGCCAGGTGGTAAATCCTCAACTGAAATAATTCCCGGCTCACTAATAAAGAATC 6339 |||||||||||| |||||||| ||||| ||| || |||||||| ||||| ||||||| Sbjct 457 ATCCCCAGCCAGCAGGTAAATCTTCAACGTTAATTATGCCCGGCTCGCTAATGAAGAATC 398 Query 6340 GCCAGTCGCCCATTCCAAGAGATGGATTTTTACGAAAACGCTTTTTTCTATCTGCCAACA 6399 ||||||||||||| |||| | || ||| | || |||||||||| || |||| | Sbjct 397 GCCAGTCGCCCATGCCAATATCCGGGTTTAGCCTGAATCGCTTTTTTCGGTCAGCCAGTA 338 Query 6400 AGTCAGCACGAGAACACTTCGCCTCTATCAGGCATGATGCTGAATTTCTGAATCCCATAG 6459 | || | || || || || || ||||||||||| || || ||| | |||||||||| Sbjct 337 AATCTGAGCGCGAGCATTTTGCTTCTATCAGGCAAGACGCGTTATTGCGAAATCCCATAG 278 Query 6460 CATCTGGCTGTTCTCCGGTACTGGTTACAGCTATAAAGCGGTCATGAAAACAAACCTTGA 6519 |||||||||| || || || ||||| ||||| ||||| ||||| ||||| || ||||||| Sbjct 277 CATCTGGCTGCTCACCTGTGCTGGTGACAGCAATAAATCGGTCGTGAAAGCAGACCTTGA 218 Query 6520 ACCCGTTGCGCTTAAGGAACTTATACGCAATCTGACAGAGTTCGCGGTGTGTTAA 6574 | ||||| ||| | ||||| || |||||||| || || | | |||||||| Sbjct 217 ATCCGTTACGCCTGAGGAATGAGTAAGCAATCTGGCAAAGCTGGTTATGTGTTAA 163 >seq43257 Length=1618 Score = 116 bits (128), Expect = 1e-21 Identities = 187/266 (70%), Gaps = 7/266 (3%) Strand=Plus/Minus Query 29282 GCATGGGTGGAGAAAAACATCAAAGTGCCACTGACTGAACCCCAGAAAGCGGGTATTGCG 29341 || ||||| || |||| | | | || |||||||| ||||| ||||| | || || ||| Sbjct 873 GCCTGGGTAGATAAAA-CGTACACGTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCG 815 Query 29342 TCATTCTGTCCTTACAACATTGGCCCAGGTAAGTGTTTCCCGTCGACGTTTTAT---AAA 29398 ||||||||||| | ||||||||||| ||||| || | || || ||||| || ||| Sbjct 814 TCATTCTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAA 755 Query 29399 CGAATTAATGCAGGAGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGAC 29458 | || | ||||| ||||| ||||| || | || ||| | ||||| ||| Sbjct 754 CTAA---ACGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAAAGCGCTGGATATTCGAC 698 Query 29459 GGTGGCAGAGACTGCCGTATTCGCTCAAATAACTGTTATGGTCAGGTCTCACGGCGTGAC 29518 || || | ||| ||||| |||||||| ||| |||||| || || || || |||||| Sbjct 697 GGCGGGAAAGATTGCCGCATTCGCTCTAATGGCTGTTACGGGCAAGTTATCCGCCGTGAC 638 Query 29519 CAGGAGAGCGCGCTGGCGTGCTGGGG 29544 ||||| | ||| | |||||||| Sbjct 637 CAGGAATCAGAGCTCACATGCTGGGG 612 Score = 89.7 bits (98), Expect = 2e-13 Identities = 183/261 (70%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 30003 ACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCTGCACTTGATGCCAGATACTCG 30062 || |||| |||||||||| ||||||||| |||||||| |||||||||| |||| | Sbjct 444 ACAATTAACGATATGCAGCGTCGCCAGCGTTCAGTTGCTGCGCTTGATGCCAAATACACA 385 Query 30063 AGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTTCGCGCT-GACGTTGCCGCTGG 30121 | |||| | |||||| | ||| | || || | | ||| || |||| |||| Sbjct 384 AAGGAACTTAACGATGCTAAAGCA-ACTATCAATCAGCTTAAGCTTGATGTTGATTCTGG 326 Query 30122 TTACCGCAGCCTGCGGATCAACGCCACCTGT---CCAGGTCCCGTGCGTGAAGCCACCGG 30178 | ||||| ||| |||| ||||||||| |||| | || || | ||||| | Sbjct 325 CAAGCGCAGGTTGCAACTCAATGCCACCTGTAAGCCAGC-CGCGACCGGCA--CCACCAG 269 Query 30179 CACCGCCC-GCGTGGATAATGCAACCGGCCCCCGACTGG-CAGACACCGCTGAACGGG-A 30235 | || || || ||| | |||| || |||| |||| ||||| ||||| |||||| | Sbjct 268 CGCCACCAAGCATGGCTGATGCTTCCA-CCCCAGACTTTACAGACTCCGCTCAACGGGGA 210 Query 30236 TTATTTCACCCTCAGAGAGAG 30256 |||||| ||||||||||| || Sbjct 209 TTATTTTACCCTCAGAGATAG 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193252514571000