Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq100029 248 2e-61 seq82134 109 2e-19 seq77310 91.5 4e-14 seq74443 89.7 1e-13 seq38246 89.7 1e-13 seq10342 86.0 2e-12 >seq100029 Length=517 Score = 248 bits (274), Expect = 2e-61 Identities = 268/355 (75%), Gaps = 0/355 (0%) Strand=Plus/Plus Query 9765 TTAACACACCGCGAACTCTGTCAGATTGCGTATAAGTTCCTTAAGCGCAACGGGTTCAAG 9824 |||||||| | | || || |||||||| || ||||| | ||| ||||| |||||| Sbjct 163 TTAACACATAACCAGCTTTGCCAGATTGCTTACTCATTCCTCAGGCGTAACGGATTCAAG 222 Query 9825 GTTTGTTTTCATGACCGCTTTATAGCTGTAACCAGTACCGGAGAACAGCCAGATGCTATG 9884 || || ||||| ||||| ||||| ||||| ||||| || || || ||||||||||||||| Sbjct 223 GTCTGCTTTCACGACCGATTTATTGCTGTCACCAGCACAGGTGAGCAGCCAGATGCTATG 282 Query 9885 GGATTCAGAAATTCAGCATCATGCCTGATAGAGGCGAAGTGTTCTCGTGCTGACTTGTTG 9944 ||||| | ||| || || ||||||||||| || || || || || | || || || Sbjct 283 GGATTTCGCAATAACGCGTCTTGCCTGATAGAAGCAAAATGCTCGCGCTCAGATTTACTG 342 Query 9945 GCAGATAGAAAAAAGCGTTTTCGTAAAAATCCATCTCTTGGAATGGGCGACTGGCGATTC 10004 || || |||||||||| || | ||| || | |||| |||||||||||||||||| Sbjct 343 GCTGACCGAAAAAAGCGATTCAGGCTAAACCCGGATATTGGCATGGGCGACTGGCGATTC 402 Query 10005 TTTATTAGTGAGCCGGGAATTATTTCAGTTGAGGATTTACCACCTGGCTGGGGATTACTT 10064 || ||||| |||||||| || ||| ||||| |||||||| ||||||||||||| || Sbjct 403 TTCATTAGCGAGCCGGGCATAATTAACGTTGAAGATTTACCTGCTGGCTGGGGATTGCTG 462 Query 10065 CACGTTGTTAACGGAAGAGTACGGAAAGTACATGGGTGGCCCAAGGGTAATTGCT 10119 || |||||||| || | || || || || || || ||||| | || ||||||| Sbjct 463 CATGTTGTTAATGGCAAGGTGCGAAAGGTCCAGGGCTGGCCGACAGGGAATTGCT 517 >seq82134 Length=394 Score = 109 bits (120), Expect = 2e-19 Identities = 180/251 (72%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 12785 GTGTGGGAGGTAGCAGAGGGTGCGCTTACGGACGAAGACACTGAGATTATCTGGGTG-GC 12843 |||||||| || || || || || | || |||||| |||| || |||||| | | Sbjct 380 GTGTGGGAAGTGGCTGAAGGCGCA-TGACAGACGAAAACACGATCATCATCTGGATTCGT 322 Query 12844 GTTCGGAAACCCGACGC-GTAACACCGGGCGTTTCCGCGAATGTTTCCGCAAATATAAAC 12902 |||||| ||||| || | | ||||| || || |||||||| || || |||||| || Sbjct 321 GTTCGGCAACCCCACACAGGAACACAGGCCGATTCCGCGAGTGCTTTCGCAAA-ATCGCA 263 Query 12903 ACCGCTGGAAAACTGCG-CAGATTGACAGCCGGACGGTGGAAGGCACTAACAAACAGCAG 12961 ||||||| | | ||| || || ||||| ||||||||| ||||| ||||| || || Sbjct 262 GGCGCTGGATA-CAGCGGCAAATCGACAGTCGGACGGTGCCTGGCACGAACAAGAAGAAG 204 Query 12962 TTGCAGAAATGGGTTGATGACTACGGGGAAGACAGCGACTTCGTTAAAATCCGTGTGCGC 13021 | | | |||||| | ||||| || ||||||||||| || ||| | || |||||| Sbjct 203 CTCGACGAGTGGGTTAACGACTATGGCGAAGACAGCGATTT--GTAAGGTGCGAGTGCGC 146 Query 13022 GGCATATTCCC 13032 ||||| || || Sbjct 145 GGCATGTTTCC 135 >seq77310 Length=2003 Score = 91.5 bits (100), Expect = 4e-14 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 1194 CATGATATGCGCCGTACAGCCAGTACGTTGTTGCATGAGGCTGGTTATCCTTCAGACTGG 1253 |||||| | || | || || || || || |||||||||| || || | | |||||| Sbjct 687 CATGATCTCCGTAGAACTGCGAGCACTCTGCTGCATGAGGCCGGATACAATACTGACTGG 628 Query 1254 ATTGAAAAG-GCTCTGGCACATGAGCAGAAAGGTGTGCGCGCCGTATATAACAAAGCGGA 1312 || ||||| ||| ||||| |||| |||||||| || | || |||||||||||||| || Sbjct 627 ATCGAAAAATGCT-TGGCAAATGAACAGAAAGGGGTAAGGGCGGTATATAACAAAGCTGA 569 Query 1313 ATA-CGCCAGACAGCGCGCCTACATGTTGCAGCAGTGGGCCGATATGATTGAT 1364 ||| || || || | || | ||| | ||| | ||||| |||||||| ||| Sbjct 568 ATATCGAGAG-CAAAGAGCATCAATGCTACAGGATTGGGCTGATATGATAGAT 517 >seq74443 Length=205 Score = 89.7 bits (98), Expect = 1e-13 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 3314 TTCGTCAGGGGTGTAAACACCGAGAAGTACATCAGGAGCGTGCAGGCGAGCCCATCGTTT 3373 ||||||||| ||||| ||||| | || |||||||| || ||||| ||||| ||||| Sbjct 161 TTCGTCAGGCGTGTACACACCTAAAATCACATCAGGGCAGTAAAGGCGCGCCCAGCGTTT 102 Query 3374 CGTGCAAAGATAGGCGAGCTGCTGGCGCGGATC-CTGTTCCCACAATGGAGAGTTACGCA 3432 || || ||||| || |||||||| ||||| ||| ||||||||| |||||||||| Sbjct 101 GGTTGCGAGGTAGGCCAGTTGCTGGCGGGGATCGCTGG-CCCACAATGTGGAGTTACGCA 43 Query 3433 C 3433 | Sbjct 42 C 42 >seq38246 Length=2704 Score = 89.7 bits (98), Expect = 1e-13 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 3314 TTCGTCAGGGGTGTAAACACCGAGAAGTACATCAGGAGCGTGCAGGCGAGCCCATCGTTT 3373 ||||||||| ||||| ||||| | || |||||||| || ||||| ||||| ||||| Sbjct 1513 TTCGTCAGGCGTGTACACACCTAAAATCACATCAGGGCAGTAAAGGCGCGCCCAGCGTTT 1572 Query 3374 CGTGCAAAGATAGGCGAGCTGCTGGCGCGGATC-CTGTTCCCACAATGGAGAGTTACGCA 3432 || || ||||| || |||||||| ||||| ||| ||||||||| |||||||||| Sbjct 1573 GGTTGCGAGGTAGGCCAGTTGCTGGCGGGGATCGCTGG-CCCACAATGTTGAGTTACGCA 1631 Query 3433 C 3433 | Sbjct 1632 C 1632 >seq10342 Length=7320 Score = 86.0 bits (94), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 14420 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 14479 ||||| | | |||||| ||||||||||||||| ||||||||||||||| |||||| ||| Sbjct 1518 TGGCGCGCCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCC 1577 Query 14480 AACTGAGCTA 14489 | |||||||| Sbjct 1578 AGCTGAGCTA 1587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142965644655600