Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019457.1 Length=44492 Score E Sequences producing significant alignments: (Bits) Value seq70091 150 5e-32 seq50064 132 1e-26 seq47312 113 1e-20 >seq70091 Length=496 Score = 150 bits (166), Expect = 5e-32 Identities = 138/172 (80%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 10889 AGTCGCATGGCGAATCCTCGATGCCCAATATTTCGGATTGGCCCAACGACGCAAGCGTGT 10948 ||| || |||||| | | || || |||| |||||| |||||||||||||||| ||||| Sbjct 60 AGTTGCCTGGCGAGTGC--GACGCTCAATTTTTCGGCGTGGCCCAACGACGCAACCGTGT 117 Query 10949 GTTTGTTGTCGCAAGTGCTCGAAAAGGATTCGATCCCGCAGAAGTATTATTTGAGCGCGA 11008 ||| ||||||||||||||||||| || |||||||||||| || ||||||||||| ||| Sbjct 118 GTTCGTTGTCGCAAGTGCTCGAACAGACTTCGATCCCGCAAAAATATTATTTGAGTCCGA 177 Query 11009 AGGCGTGCGAAGGGATTCTGCGCCGAGCCGAGAAGCGTTGCAAGAAGCTGCC 11060 || |||| || ||||||||||| || ||||| || || | ||| |||| Sbjct 178 CAGCATGCGCCGGAATTCTGCGCCGTGCAGAGAACCGAAGCGA-AAGTTGCC 228 >seq50064 Length=589 Score = 132 bits (146), Expect = 1e-26 Identities = 270/393 (69%), Gaps = 6/393 (2%) Strand=Plus/Minus Query 27843 GTTATGCCGGTAACGCGTTTGACTACTCGCTCGATGAACTGCGTAAGTC-GCAACAATTG 27901 |||||||||||||| | || |||||| || || ||||| || || | || |||| | Sbjct 569 GTTATGCCGGTAACAGCTATGGCTACTCACTGGAAGAACTCCGCAAAGCTGCCGCAAT-G 511 Query 27902 CGTATGCCGATTGACACCACTAAGGGTCGTATGGCCTTCCGTGGCGCACAAGAGCACACT 27961 |||||||| | || | |||| | ||| |||| ||||||||||||| |||| | Sbjct 510 CGTATGCCTCTGGATGCTGCTAAAGCACGTCTGGCGTTCCGTGGCGCACGTCAGCATTCA 451 Query 27962 CAAAAAGTGGCGTACTTTGGCGATGCGTCTCGCGGTATGACAGGTTTGTTCAATAACCCT 28021 || | || || | || || ||| | ||| ||| || |||||||| ||||| Sbjct 450 CAGCAGGTTGCATTTTTCGGTGATTCACAGCGCAACATGTACGGCCTGTTCAATCACCCT 391 Query 28022 AACCTAGCGCTGGATAACTCCACTACCAACTGGAGTACGGCTACAGGTCAGGACATTATT 28081 ||| | |||||||||||||| || |||||| || ||||| ||| || ||| || Sbjct 390 AACGTGCCGCTGGATAACTCCGCTCTGGACTGGACCACTGCTACCGGTGCCGAGATTGTT 331 Query 28082 GACGACATGAACGGGCTATTCATCAAAGTGTGGACCGATTCGGCTAACGTTCACGTACCA 28141 | ||||||||| | || ||| |||||||||||| | || || | ||| ||| Sbjct 330 GCTGACATGAACAGCCTCATCACCAAAGTGTGGACTCAGTCAGCACAGCGCCACACTCCA 271 Query 28142 AACACACTGGTACTTGATTCA-ACCCGT-TACGCTCAAATCTCGTCACAACGTATGGATA 28199 ||||| ||| | || ||| | || || | | || || | |||||||||| Sbjct 270 AACACTCTGCTGCTCCCGTCAGTTCTGTGGACTATTGCAGCTAAGCA-AGCGTATGGATA 212 Query 28200 CGGGTACAGATACCA-CAGTGTTGGAGTTCTTC 28231 | ||||| ||||||| | ||| ||||||||||| Sbjct 211 CTGGTACTGATACCATCTGTGCTGGAGTTCTTC 179 >seq47312 Length=585 Score = 113 bits (124), Expect = 1e-20 Identities = 192/276 (70%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 27842 GGTTATGCCGGTAACGCGTTTGACTACTCGCTCGATGAACTGCGTAAGTC-GCAACAATT 27900 ||||||||||||||| | || |||||| || || ||||| || || | || |||| Sbjct 566 GGTTATGCCGGTAACAGCTATGGCTACTCACTGGAAGAACTCCGCAAAGCTGCCGCAAT- 508 Query 27901 GCGTATGCCGATTGACACCACTAAGGGTCGTATGGCCTTCCGTGGCGCACAAGAGCACAC 27960 ||| ||||| | || | |||| | || |||| |||||||| |||| ||||| | Sbjct 507 GCGCATGCCTCTGGATGCTGCTAAAGCACGCCTGGCATTCCGTGGAGCACGTCAGCACTC 448 Query 27961 TCAAAAAGTGGCGTACTTTGGCGATGCGTCTCGCGGTATGACAGGTTTGTTCAATAACCC 28020 || |||| || | |||||| ||| | ||| ||| ||| |||||||| |||| Sbjct 447 ACAGCAAGTTGCCTTCTTTGGTGATTCACAGCGCAACATGTACGGTCTGTTCAATCACCC 388 Query 28021 TAACCTAGCGCTGGATAACTCCACTACCAACTGGAGTACGGCTACAGGTCAGGACATTAT 28080 || | ||||||||||||| | |||||| || || |||||| || ||| | Sbjct 387 CAATGTGCCGCTGGATAACTCTGCGCTGGACTGGACCACTGCGACAGGTGCCGAGATTGT 328 Query 28081 TGACGACATGAACGGGCTATTCATCAAAGTGTGGAC 28116 || ||||||||| | || | | |||||||||||| Sbjct 327 TGCTGACATGAACAGCCTCGTTACCAAAGTGTGGAC 292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142032690464400