Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019487.1 Length=143986 Score E Sequences producing significant alignments: (Bits) Value seq49441 113 4e-20 seq79948 95.1 1e-14 >seq49441 Length=999 Score = 113 bits (124), Expect = 4e-20 Identities = 237/347 (68%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 34464 TCAATAATTTGGTCGACATCCTTGTAAGCTTGAGGACACTCATCTAAGATAGTCTCGAGA 34523 |||||||| || || || ||||||||||| || || | ||||| | || | || || Sbjct 563 TCAATAATCTGATCCACGTCCTTGTAAGCCTGTGGCGATTCATCCAGTATGCTTTCCAGT 504 Query 34524 GACTTCTGGTTGACTACAATCTCATCGTCTTCTCCAACTCTCAAGC-TCTTAGCAAACTC 34582 || |||||| || |||||||| ||||| ||||| || ||| ||||||| || Sbjct 503 GAACGCTGGTTCACCACAATCTCGTCGTCCGTGCCAAC-CTTGAGCGAGCTAGCAAATTC 445 Query 34583 GTCAACCGTAACGACCTCTCTTGTAGCTCGACGACTACGAACACGACCAGCCCCATGACA 34642 ||| || |||| | | || || ||| || ||| | ||| || || || ||||| Sbjct 444 GTCTACTTTAACCA-GACGCTAGTCGCTGAGCGTGAACGTATACGTCCTGCACCGTGACA 386 Query 34643 GATAGAATAAAAGTTCTTTACACCCTC--GTCTTTACCAAGCATAATGTAGCTTGACGTC 34700 ||| ||||| ||||| | | ||| | | || || | |||||| || ||| || Sbjct 385 GATCGAATAGTAGTTCGATTCCCCCACCAGGCTGACCCGACCATAATATACGATGAAGTG 326 Query 34701 CCCATAGAGCCCGGAAT-AAGCGCCGGGTGTCCAGTTTCCTTAAACACCTTTGGGTTTAA 34759 ||||| ||||| ||||| | ||||||| || || |||||| || | |||||| || Sbjct 325 CCCATCGAGCCTGGAATGACGCGCCGGATGACCGGTTTCCATATAAGGCTTTGGATTGCC 266 Query 34760 ATGGTGTCCAGCCGGAAGAGCTCTTGTAGCTCCTTTACGATGTACGA 34806 | || || || || || || | || || |||||||| || |||| Sbjct 265 GGGATGCCCTGCTGGCAGTGCGCGCGTTGCCCCTTTACGGTGAACGA 219 >seq79948 Length=1556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/190 (72%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 35579 ATTCGTCCTATGTAGTCGCATACCACACCCGATGTCACTTCCAACGATGGATGGTGAAAT 35638 ||| ||| ||||| ||||| ||||| ||||| || || || ||||||||||| |||| Sbjct 321 ATTGGTCAAATGTACACGCATCCCACAACCGATATCGCTACCGACGATGGATGGCGAAAC 380 Query 35639 GAACCCATCTT--TAGCATTCCAAACAGCAGTAGTCCCTATACAAGTACCTACTCCAACA 35696 || || || | | || ||| |||||||| || || ||||| ||||| || || ||| Sbjct 381 GATTCCGTCGTCGTTGC--CCCATACAGCAGTCGTACCGATACATGTACCGACGCCCACA 438 Query 35697 TGCGCGTCCGGCGTGTAGCTCATATGAACATTACGAGGTATTTGTAGGTTATTTCGACCC 35756 ||| | | |||||| |||| ||||| | | | || ||||| || || || || Sbjct 439 TGCACAT-CGGCGTATAGCCCATATAGCGAATGCCGGGAATTTGCAGATTGTTATTGGCC 497 Query 35757 ATTTCAAATA 35766 |||||||||| Sbjct 498 ATTTCAAATA 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459876953448000