Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq8712 199 7e-46 seq51865 167 4e-36 seq97857 152 1e-31 seq117378 98.7 2e-15 seq44974 87.8 3e-12 seq58811 84.2 4e-11 >seq8712 Length=1748 Score = 199 bits (220), Expect = 7e-46 Identities = 463/688 (67%), Gaps = 10/688 (1%) Strand=Plus/Plus Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 ||| ||||| ||| |||||| ||| | || || | || |||||| | || || || Sbjct 133 GGGGCACATGAGAGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAACAAATCGGGAAT 192 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||| || || | ||||| || | || || |||||| ||||| ||| || | ||| Sbjct 193 CCATAGAGCAAGGAAGAGGTCACGGGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAG 252 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 || | |||||||| | ||| ||||||||||||||||| || | || || ||| || || Sbjct 253 GTCGAGGAACTCAAACACGTCTGCGTGCCACGGCTCCAGGTAAATGGGCAAAGCACCAGG 312 Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGG 222237 |||||||||||||||||| || || || | |||||| | |||||| | || Sbjct 313 TCGCTTGTTGCCACCCTGGTCGACGTATCTGGCGGTGTTGTTGAACACGCGAAGCATGGG 372 Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297 || | ||||| || ||||||||||| |||||||| || ||| | | | Sbjct 373 AACGACGCCGTTTGAGGTGCCGTTGGTGCCGGCAATGTACGAGCCAGTGGCACGAATGCG 432 Query 222298 ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGT 222357 | | || |||||| || || || || |||||||||||||| || |||| || Sbjct 433 GTGGACGTTCAGGCCGATGCCGCCAGCCATCTTGGAGATCATGGCGCACGTC-TGAGGGT 491 Query 222358 GTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 ||| |||||| || || ||| ||||| | || | || || || || |||| ||| Sbjct 492 GTCATAGATGCCTTCGATGCTGTCATCCTTCA-GTCGACAAGGAAGCAGGATGACAGCTG 550 Query 222418 AGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG 222476 ||| ||| | | || ||||| || || ||||| |||||| || ||| | || | Sbjct 551 GCATTGTGGCGTACCA-GCGTTGAATAGTGTGGGCGAGGCGTGGGTGAAGAATTTGCTCG 609 Query 222477 ACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCG 222535 |||| || | ||| || || | ||| | | | |||||| ||| || | | | ||| Sbjct 610 ACATGAGGTTGTAGGTTTCCAGGACACGCTCCAGGTTGTCTCCCCAGATACCG-ACGGCA 668 Query 222536 CATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGT 222593 | ||| ||||| ||| || | ||| ||| || | ||||| ||| || | Sbjct 669 ACACGCATAATCATGTGCTGTGGTCGCTCGACAATCTTGCCGTTGAGCT--TGAGGAGAT 726 Query 222594 ACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCA 222653 | ||| |||||||||||||| |||||||| | | || ||||||||| ||| || | Sbjct 727 AGGATCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCTCTGTCGTAGACAA 786 Query 222654 CGGCGGCGTCCAGCTCCGACTTGTGCTT 222681 ||| | ||| || ||| ||||||||| Sbjct 787 TGGCAGAGTCGAGTTCCTCCTTGTGCTT 814 >seq51865 Length=821 Score = 167 bits (184), Expect = 4e-36 Identities = 302/447 (68%), Gaps = 14/447 (3%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAG-CGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| || ||||||| | | || | | | || |||| | | || |||||||| || Sbjct 378 TGGGCCCTGCGGTGGATCTCCGGACAAAAACTCCACCTTTGCCAACCGTCTGGTAGCGTT 437 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||||| ||||| || ||||| ||||| || || || || ||||||||||||||||| | Sbjct 438 CGCTGCGGTGGAAGGAATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAA 497 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||||||| || ||||||||||||||||||| | ||||| || | Sbjct 498 GCGTGGCCTCATGCCCGGCCTCACCTTTTCCAACGAGCTCATCTCGCGTGACGAAGGCAT 557 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA---ACCTTCTCA 26069 |||| || |||||||||||||||| | || | ||| |||| || || | Sbjct 558 GCACACCGACTTTGCCTGCCTGCTCTTCTCG------CTCCTCAACAACCGCCCCTCCAA 611 Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 ||| |||| | ||||||| ||||| || ||||||||||||||||| | Sbjct 612 AGACGCCGTGCAAGCCATCATCACCGAGGCCGTCGAGATCGAGAAGGAGTTCCTGTCCGA 671 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| || |||||| |||| |||||||||| Sbjct 672 CGCCCTGCCTTGTGCGCTGCTCGGCATGAACGCCACCCTCATGTGCCAGTACATTGAGTT 731 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAAC 26247 ||| ||||||| |||||| | || || | | || |||| |||| | ||| Sbjct 732 TGTCGCCGACCGGCTGCTGCTCTCCCTCGGCAACACGAGGTACTAC--CACGCCACCAAC 789 Query 26248 CCGTTCGACTTTATGGAAAACATATCG 26274 || || ||||||||||| ||||| ||| Sbjct 790 CCTTTTGACTTTATGGAGAACATCTCG 816 >seq97857 Length=911 Score = 152 bits (168), Expect = 1e-31 Identities = 335/494 (68%), Gaps = 16/494 (3%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| |||||| || || ||||| || | ||| |||| | ||||| || || | Sbjct 318 GGCCAAGTTACAGACAGCAACCTCATCTGGGGCGGTGTACTCAACAATCTCAGTGCATAA 377 Query 221773 GTTGCTGCACTT--GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830 ||| | ||| ||| || || || | || || || | ||||| ||| ||||||| Sbjct 378 GTTC--GAACTGCGGATAGTGCCGAGATTCTTCTGGTT-GCTTTGCGGTTGCAAGCGTCC 434 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||| ||||| |||||| |||||||| |||||| | || || | | || | Sbjct 435 TTGTAAAGCATGAAGGGATTACCAGTCTCAGTTTGAGCCTCGAGGATGGCATACGAGC-T 493 Query 221891 TCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTT---CATACCCGGTATAG 221947 ||| ||||| || ||| | || ||| | | |||||| |||| | ||| Sbjct 494 TCTG-GGCGCGAACGGTC----TCACG--ACCTTTGTTCTTTTTCTCATAACTTTCGTAG 546 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || ||||||| |||||||| | || | || || |||||| | |||||||||| Sbjct 547 AGGGCCTCAAACTCATCACCGTAGACGTCCGCGAGACCAGGACACTCGTTGGGACACATC 606 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 ||| |||| | | || |||| ||| | || ||||||||| |||||||||||||| || Sbjct 607 AGAGTCCACTCCCCATTCTCTTGGACACGCTTCATGAAGAGATCCGGGATCCACAGGGCG 666 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || | || | | || ||||| ||| | ||| || | || ||||| || Sbjct 667 TAGAATAAGTCGCGAGCGCGAACTTCCTCTTTGCCATGGTTCTTACGAAGGTCCAAGAAG 726 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 |||| || || |||||||| ||||| || |||| || | || ||||| |||||||| Sbjct 727 CCAAATATATCGGCGTGCCATGGCTCGAGGTAGATTGCGAATGCTCCGGGACGCTTGTTA 786 Query 222188 CCACCCTGATCCAC 222201 ||||||||||| || Sbjct 787 CCACCCTGATCGAC 800 >seq117378 Length=621 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 ||||| |||||||||||||||||||||||||| ||||||||| ||| | || ||||| Sbjct 260 GTCAGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTGAG-CTCACGAGCTTCGGG 318 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| ||||| ||||| | | || | ||||| || ||||| || || | ||| Sbjct 319 AGACTCGAACGGCATGCGCAGAGCCAGGAACGCATCGGCAAGACCCTGGACACCAACACC 378 Query 221536 GATGGGCCTGTGTCTCCTGTT 221556 ||| || | ||||| | |||| Sbjct 379 GATAGGTCGGTGTCGCATGTT 399 >seq44974 Length=881 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCC- 25935 |||| ||||||| || || || || || || ||||| ||||| ||| | ||||| | Sbjct 720 AGCGCTTGGTAGCTTTCGCCGCCGTCGAAGGTATCTTCTTCAGTGGTGCCTTTGCCTACT 661 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATG-CCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 ||||||||||||||| || || ||| ||||| || ||| ||||||||||| || Sbjct 660 ATCTTCTGGCTCAAGAAGCGTGGTCTGATGTCCCGGACTCACCTTCTCCAACGAGCTAAT 601 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 | | | || || ||| | |||| |||||||| |||||||| Sbjct 600 CTCCCGCGATGA-GGTTTGCACACTGATTTTGCATGCCTGCT 560 >seq58811 Length=295 Score = 84.2 bits (92), Expect = 4e-11 Identities = 166/241 (69%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 221378 TCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTGGTAGATG 221437 ||||| || |||||| | ||||| | ||| ||||| |||| || |||||| Sbjct 242 TCGTACGGGCCGTACTCCTTCGCCTGCTCCATCGACGCCGTCATGGCACCGAAGTAGATC 183 Query 221438 GTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCATACGCAGC 221497 ||||| || || || || || | || ||| || ||| ||||| |||||| Sbjct 182 GTCTCGAAAATATCCTCATTTAGCCGGCGCGCTTCGTCCGACTCGAACGGCATCCGCAGC 123 Query 221498 ATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTT 221556 || |||| | | |||||||| ||||| || || | ||||||||||| ||| | | |||| Sbjct 122 ATGATGAACG-CATCGGCCAGCCCCTGCACACCCAGACCGATGGGCCGGTGGCGCATGTT 64 Query 221557 G----GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGT 221612 | || ||| ||||| || |||||| |||||| |||||| | |||||||||| Sbjct 63 GCTCCGA--CGG--GCTTCCTCGACCGGATAATAGTTGATGTCGATAATCTTGTTGAGGT 8 Query 221613 T 221613 | Sbjct 7 T 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927331944032000