Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019500.1 Length=168066 Score E Sequences producing significant alignments: (Bits) Value seq31280 168 7e-37 seq49234 129 6e-25 seq50823 107 2e-18 >seq31280 Length=10079 Score = 168 bits (186), Expect = 7e-37 Identities = 279/400 (70%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 94855 CCAACTCCTATTATGGCTGGAGCACGTACACCAACCCGTCAATTTAGTTCTTGTGTGGTT 94914 || || || || ||| | |||| ||||| ||||||||||| || || || ||||| | Sbjct 1739 CCGACGCCAATCATGTCGGGAGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTCCTG 1680 Query 94915 ATTGAAGCAGGCGACTCACTGAAATCTATTAACAAAACTGCTAACTCAATAATTGAATAC 94974 |||||| |||||| ||| | || || ||| || | | | | || | ||||| Sbjct 1679 ATTGAATGTGGCGACAGCCTGGATTCCATCAACGCGACCTCCAGCGCTATTGTGAAATAC 1620 Query 94975 ATTTCTAAACGTGCCGGTATTGGTATCAACGTTGGTATGATTCGTGCTGAAGGTTCTCGT 95034 |||| |||| || ||||||||||| |||| ||| || || || || | Sbjct 1619 GTTTCACAACGCGCAGGTATTGGTATTAACGCGGGTCGTATCCGCGCGCTGGGCAGCCCG 1560 Query 95035 ATTGGCATGGGCGAAGTCAAGCATACCGGTGTTATTCCATTCTGGAAACATTTCCAGACT 95094 ||| || || |||| ||||||||| ||| || |||| || || |||||||| Sbjct 1559 ATTCGCGGCGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAGCACTTCCAGACA 1500 Query 95095 GCTGTTAAATCATGTTCACAAGGTGGAATCCGTGGCGGCGCTGCTACTGCTTAT-TATCC 95153 || || ||||| ||||| || || || ||||||||||||| || || ||| | ||||| Sbjct 1499 GCGGTGAAATCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGAC-GCTGTTCTATCC 1441 Query 95154 TATTTGGCATTTGGAAGTTGAAAATCTGCTCGTTCTGAAAAACAACAAAGGTGTCGATGA 95213 || |||||| ||||||| |||| ||| | || |||||||||||| ||||| || | Sbjct 1440 GATGTGGCATCTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAAGG 1381 Query 95214 GAACCGTATTCGCCATATGGACTACGGAATCCAGATGAAC 95253 ||||| | || || ||||||||||| | ||| | ||| Sbjct 1380 TAACCGCGTACGTCACATGGACTACGGTGTGCAGCTCAAC 1341 >seq49234 Length=879 Score = 129 bits (142), Expect = 6e-25 Identities = 153/203 (75%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 7878 CCTATCAACTACAGGAGA-TTAAAAATGACTCGTATCAACCT--TACCTTAGTATCTGAA 7934 |||||| || |||||| || |||||| |||||||| || |||| |||| ||| Sbjct 574 CCTATCTTATAAAGGAGAATTTTGAATGACCCGTATCAATCTCGTACC--AGTACAAGAA 517 Query 7935 TTGGCTGACCAACACTTAATGGCTGAATATCGCGAATTACCACGTGTTTTCGGTGCAGTT 7994 || ||||||||||| | ||||||||||| || ||||| |||||||| |||||||| ||| Sbjct 516 TTAGCTGACCAACATCTTATGGCTGAATACCGTGAATTGCCACGTGTATTCGGTGCTGTT 457 Query 7995 CGTAAGCATGTTGCTAATGGTAAACGTGTTCGTGATTTTAAAATTAGCTCTACTTTTATC 8054 |||||||| || ||||||||| | |||||||||||| || |||| | || Sbjct 456 CGTAAGCACGTACAAGCTGGTAAACGAATCAATGATTTTAAAATCAGTACTACCTACAT- 398 Query 8055 CTCGGTACGGGCCATGTTACGTT 8077 | ||||| || |||||||| || Sbjct 397 TTAGGTACAGGTCATGTTACATT 375 >seq50823 Length=3276 Score = 107 bits (118), Expect = 2e-18 Identities = 142/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 7892 GAGATTAAAAATGACTCGTATCAACCTTACCTTAGTATCTG-AATTGGCTGACCAACACT 7950 || ||| ||||||||||| || || ||| | | || | ||||||| || ||||| Sbjct 318 GATATTTAAAATGACTCGGATAAAT-TTAGTTCCGGTTCAGGAATTGGCCGATCAACATC 260 Query 7951 TAATGGCTGAATATCGCGAATTACCACGTGTTTTCGGTGCAGTTCGTAAGCATGTTGCTA 8010 | |||||||||||||| |||||||||||||| || |||||||| | || || |||| | Sbjct 259 TGATGGCTGAATATCGTGAATTACCACGTGTATTTGGTGCAGTAAGGAAACACGTTGATG 200 Query 8011 ATGGTAAACGTGTTCGTGATTTTAAAATTAGCTCTACTTTTATCCTCGGTACGGGCCATG 8070 ||| ||| | || |||||||||||| || | | ||| || || || || |||| Sbjct 199 CTGGGAAA-ATATTAATGATTTTAAAATAAGTAAAAGCTATATTCTTGGAACAGGACATG 141 Query 8071 TTACGTTCTTTTA 8083 |||| || ||||| Sbjct 140 TTACCTTTTTTTA 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536807448488000