Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq33108 181 1e-40 seq31280 116 4e-21 seq34305 100 3e-16 seq49234 98.7 1e-15 seq50823 86.0 7e-12 >seq33108 Length=3479 Score = 181 bits (200), Expect = 1e-40 Identities = 150/183 (82%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 60071 TTACAAGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60130 ||| || || || ||||||||||| || || ||||| ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 60131 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 60190 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 60191 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 60250 || || || |||||||| |||||||| ||||| ||||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 60251 TTC 60253 ||| Sbjct 2788 TTC 2786 >seq31280 Length=10079 Score = 116 bits (128), Expect = 4e-21 Identities = 272/408 (67%), Gaps = 2/408 (0%) Strand=Plus/Plus Query 138495 TTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATTT 138554 || || || || || || ||||| ||||| | ||||| |||| ||||| ||| ||| Sbjct 1342 TTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTT 1401 Query 138555 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 138613 |||| || | || |||| ||||||| |||||| || ||||| | ||| || || || Sbjct 1402 TTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGC-GTCGCTGC 1460 Query 138614 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 138673 ||||||||| | || ||||| ||||| ||||| || || ||||| || || || | || Sbjct 1461 GCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAA 1520 Query 138674 AGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAAT 138733 || ||| ||| ||||| ||||||| | |||| || || || || Sbjct 1521 CGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGAT 1580 Query 138734 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGA 138793 ||| ||||||||||||| || ||||||| || | |||| ||||| | || Sbjct 1581 ACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAGCGCTGGA 1640 Query 138794 AGCCTTATTGATAGACTTTAATGAATCACCTGCTTCAATAACAACGCATGAACTAAACTG 138853 | | ||||| || | | || || |||||| | || || || || ||||| Sbjct 1641 GGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTG 1700 Query 138854 CCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAGTGAAAT 138901 || ||||| ||||| || | ||| || || || ||||| || || Sbjct 1701 ACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCAGGGAGAT 1748 >seq34305 Length=2218 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60084 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60143 ||||||||||| | || ||||| ||||||| || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 60144 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60203 ||||| || || || |||||||| | ||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 60204 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 60256 || |||| || || |||||||| ||||| || || || |||||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 >seq49234 Length=879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 246/361 (68%), Gaps = 12/361 (3%) Strand=Plus/Plus Query 61964 GTAATACTTGTACCAGTGTGGCTTCATTAAAATTTTTTCATCGAGTCGTTGTTGACTCAA 62023 |||| |||||||||| ||||||||| |||| || ||| | ||| || || | | Sbjct 158 GTAA-ACTTGTACCAAGTTGGCTTCATCAAAAGCTTCTCAATCAAACGT-GT--ACGCGA 213 Query 62024 TTT-AATAGCTGATTTGC--ATGGATTATAATCATTTTTCCATTCTGCTGGAATATCGCT 62080 | |||| | ||| || ||||| || | ||||| || |||||||||| || Sbjct 214 TAACAATAATTCATTGGCTGATGGAGTAAAGTCATTACAA-ATGCTGCTGGAATGTCTGA 272 Query 62081 GATGTCAGGAACTTCAGTATCTTTTATACTAAACTCACGTTTTAAGCATTCCGTTA-TAA 62139 ||||| || |||||||| | || ||| |||| | |||||| | | ||| Sbjct 273 TATGTCGTTAAATTCAGTATTGGTAATCTTAATACCACGACGAAGGCATTCATTAACTAA 332 Query 62140 TGTCTGATTGACGCTTTCGCAAAAATTCTAACTTATCGTAAAAGAACGTAACATGACCAG 62199 | |||| || ||| | ||| || ||| |||| || || || ||||||||||| | Sbjct 333 TTGAACATTGGCGTTTT-GTAAATATAATAATTTATTATAGAA-AATGTAACATGACCTG 390 Query 62200 AGCCTAAAATAAACTCGGAAGATATTTTAAAATCTTTAACCCGCTTACCATTTGCCACAT 62259 |||||| | | | | ||||||||||| || | || |||||| | || | Sbjct 391 TACCTAAATGTAGGTAGTACTG-ATTTTAAAATCATTGATTCGTTTACCAGCTTGTACGT 449 Query 62260 GTTTACGAACTATACCAAAAACACGCGGCAATTCACGATACTCAGCCATAAGATGTTGGT 62319 | |||||||| ||| || ||||| ||||||||||| || ||||||||||||||||||| Sbjct 450 GCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTATTCAGCCATAAGATGTTGGT 509 Query 62320 C 62320 | Sbjct 510 C 510 >seq50823 Length=3276 Score = 86.0 bits (94), Expect = 7e-12 Identities = 129/182 (71%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 62178 TAAAAGAACGTAACATGACCAGAGCCTAAAATAAACTCGGAAGATATTTTAAAATCTTTA 62237 ||||| || |||||||| || | || | |||| | | |||||||||||| ||| Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 62238 ACCCGCTTACCATTTGCCACATGTTTACGAACTATACCAAAAACACGCGGCAATTCACGA 62297 | || ||| | || ||||| | ||| |||||| ||||| || ||||||||| Sbjct 188 ATATT-TTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 62298 TACTCAGCCATAAGATGTTGGTCGGTCAGTTCAGAAACAAGTGTTAAATTGATGCGAGTC 62357 || |||||||| |||||||| |||| || ||| ||| | |||||| || |||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAAATTTATCCGAGTC 306 Query 62358 AT 62359 || Sbjct 307 AT 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531801215692000