Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019518.1 Length=44485 Score E Sequences producing significant alignments: (Bits) Value seq70091 159 1e-34 seq36135 154 4e-33 seq50064 125 2e-24 seq47312 122 2e-23 seq38768 120 9e-23 >seq70091 Length=496 Score = 159 bits (176), Expect = 1e-34 Identities = 228/315 (72%), Gaps = 17/315 (5%) Strand=Plus/Plus Query 10490 AGTCGCTTGGCGCGTCCTCGATGCCCAATATTTCGGACTGGCCCAACGACGCAAGCGTGT 10549 ||| || ||||| || | || || |||| |||||| |||||||||||||||| ||||| Sbjct 60 AGTTGCCTGGCGAGTGC--GACGCTCAATTTTTCGGCGTGGCCCAACGACGCAACCGTGT 117 Query 10550 GTTTGTTGTCGCAAGTGCTCGAAAAGGATTTGATCCCGCAGAAGTATTATTTGAGCGCGA 10609 ||| ||||||||||||||||||| || || ||||||||| || ||||||||||| ||| Sbjct 118 GTTCGTTGTCGCAAGTGCTCGAACAGACTTCGATCCCGCAAAAATATTATTTGAGTCCGA 177 Query 10610 AGGCGTGCGAAGGGATTCTCCGCCGAGCCGAGAAGCGTTGCAAGA--------AGCTGCC 10661 || |||| || ||||| ||||| || ||||| || || | | || ||| Sbjct 178 CAGCATGCGCCGGAATTCTGCGCCGTGCAGAGAACCGAAGCGAAAGTTGCCCCAGATGCT 237 Query 10662 GGAATCA---TTAGAGACGGCTCTCATTGGGACGATCCGAGA-AACGCACACCCAACCTT 10717 |||| | ||| | |||| || ||||| || | ||| ||||||||||||||| | Sbjct 238 GGAAGCCGCGTTAAA-ACGGTAGCCACTGGGATGA-CAGAGCCAACGCACACCCAACCCT 295 Query 10718 AAATCAATCCTTCAACACTGGCGGAATAGGGGCGAGTAACCAAGAAATATTCAGTCAGCG 10777 ||||| || |||| ||||||| || || ||| || | ||| |||| |||||| Sbjct 296 GAATCAGTCGAACAACGCTGGCGGCATTGGCCTGAGCAATC-GGAATTATTTTCTCAGCG 354 Query 10778 CGGTGCGGGAGTTGT 10792 ||| | || |||| Sbjct 355 GGGTTCTGGCCTTGT 369 >seq36135 Length=2714 Score = 154 bits (170), Expect = 4e-33 Identities = 230/324 (71%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 17591 TATGGCGGCCGTATGTCGTCTAAGTCACACGACGCCGCAGGGATGGCTATAGCCCGAGCA 17650 || ||||| ||||||||||| ||||| ||||| || ||||| |||||||||| || || Sbjct 343 TACGGCGGTCGTATGTCGTCCAAGTCTCACGATGCTGCAGGCGTGGCTATAGCACGTGCC 284 Query 17651 AACTTTATGCCTCAGAGATTCTTATGTACCCGTATGTACCAGAATAGGATTGCAGATTCG 17710 || || ||| ||| | ||| | ||| |||||||||||||| | ||||| || ||| Sbjct 283 AATTTCATGGAGCAGCGTTTCCTGTGTCTGCGTATGTACCAGAACCGTATTGCTGACTCG 224 Query 17711 GTTTACACGTTGCTGAAAGACAAGATTTATGCGTTCAATTTGCAGCA-TAAATTTAAGAT 17769 || || ||| |||| ||||| || ||| || ||| | || |||| || ||||| | Sbjct 223 GTATATACGCTGCTCAAAGATAAAATTGATTATTTCGGTCTG-AGCAGGAATTTTAAAGT 165 Query 17770 ATACACCGATGCTATTGAACACCGTGAACACGATTCACTTTTTAGATTTTACGGTATAGC 17829 || | || || || ||||| | | | ||| | ||| | ||||||||||| || Sbjct 164 TTATGCAGACGCCATCGAACATAAAACAAATGGCTCATTATTTCGCTTTTACGGTATGGC 105 Query 17830 GCGTAATATTGATGAGATTAAATCATTCGAACGCGCCGACGTGTGGTGGAACGAAGAAAG 17889 |||||||| || || ||||||||||| ||| ||| || |||| ||||| Sbjct 104 CCGTAATATCGACGAAATTAAATCATTTGAAAAAGCCTCTGTTGCATGGATTGAAGAGGC 45 Query 17890 TCATAACTTGACCGAGGAAATGTT 17913 ||||| || ||||| || ||||| Sbjct 44 GCATAATTTAACCGAAGAGATGTT 21 >seq50064 Length=589 Score = 125 bits (138), Expect = 2e-24 Identities = 193/273 (71%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 25951 GTTATGCCGGTAACGCATTTGACTACTCGCTCGATGAACTACGTAAGTC-GCAACAATTG 26009 |||||||||||||| | || |||||| || || ||||| || || | || |||| | Sbjct 569 GTTATGCCGGTAACAGCTATGGCTACTCACTGGAAGAACTCCGCAAAGCTGCCGCAAT-G 511 Query 26010 CGCATGCCGATTGACACCACTAAGGGTCGTATGGCCTTCCGTGGCTCACAGGAGCACACC 26069 || ||||| | || | |||| | ||| |||| ||||||||| ||| |||| | Sbjct 510 CGTATGCCTCTGGATGCTGCTAAAGCACGTCTGGCGTTCCGTGGCGCACGTCAGCATTCA 451 Query 26070 CAAAAAGTAGCGTACTTCGGTGATGCGTCTCGCGGTATGACCGGTTTGTTCAATAACCCT 26129 || | || || | ||||||||| | ||| ||| ||| |||||||| ||||| Sbjct 450 CAGCAGGTTGCATTTTTCGGTGATTCACAGCGCAACATGTACGGCCTGTTCAATCACCCT 391 Query 26130 AATCTAGCGCTGGATAACTCCACTACCAACTGGAGTACGGCTACAGGTCAGGAGATTATT 26189 || | |||||||||||||| || |||||| || ||||| ||| |||||| || Sbjct 390 AACGTGCCGCTGGATAACTCCGCTCTGGACTGGACCACTGCTACCGGTGCCGAGATTGTT 331 Query 26190 GACGACATGAACGGGCTATTCATCAAAGTGTGG 26222 | ||||||||| | || ||| |||||||||| Sbjct 330 GCTGACATGAACAGCCTCATCACCAAAGTGTGG 298 >seq47312 Length=585 Score = 122 bits (134), Expect = 2e-23 Identities = 193/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 25950 GGTTATGCCGGTAACGCATTTGACTACTCGCTCGATGAACTACGTAAGTC-GCAACAATT 26008 ||||||||||||||| | || |||||| || || ||||| || || | || |||| Sbjct 566 GGTTATGCCGGTAACAGCTATGGCTACTCACTGGAAGAACTCCGCAAAGCTGCCGCAAT- 508 Query 26009 GCGCATGCCGATTGACACCACTAAGGGTCGTATGGCCTTCCGTGGCTCACAGGAGCACAC 26068 ||||||||| | || | |||| | || |||| |||||||| ||| ||||| | Sbjct 507 GCGCATGCCTCTGGATGCTGCTAAAGCACGCCTGGCATTCCGTGGAGCACGTCAGCACTC 448 Query 26069 CCAAAAAGTAGCGTACTTCGGTGATGCGTCTCGCGGTATGACCGGTTTGTTCAATAACCC 26128 || |||| || | ||| |||||| | ||| ||| |||| |||||||| |||| Sbjct 447 ACAGCAAGTTGCCTTCTTTGGTGATTCACAGCGCAACATGTACGGTCTGTTCAATCACCC 388 Query 26129 TAATCTAGCGCTGGATAACTCCACTACCAACTGGAGTACGGCTACAGGTCAGGAGATTAT 26188 ||| | ||||||||||||| | |||||| || || |||||| |||||| | Sbjct 387 CAATGTGCCGCTGGATAACTCTGCGCTGGACTGGACCACTGCGACAGGTGCCGAGATTGT 328 Query 26189 TGACGACATGAACGGGCTATTCATCAAAGTGTGG 26222 || ||||||||| | || | | |||||||||| Sbjct 327 TGCTGACATGAACAGCCTCGTTACCAAAGTGTGG 294 >seq38768 Length=1707 Score = 120 bits (132), Expect = 9e-23 Identities = 625/981 (64%), Gaps = 40/981 (4%) Strand=Plus/Plus Query 32113 AACTCAACCATTACCGGCGAGTTTAAAAAATTATCAGGTGTTGCCGCCGAGTCGCTTACA 32172 ||||| ||||||||||| || |||||||| | | |||||||| || || || || Sbjct 41 AACTCTACCATTACCGGTGAATTTAAAAAGTCTCCGGGTGTTGCGGCTGAAGACCTGTCA 100 Query 32173 GGTACCGAATACGCCGCCATGAAACAAGATACGAAAAAATGC-GTATTTTATTCAGCGG- 32230 | ||| | ||| ||||||| | | || |||| || | || || ||||| Sbjct 101 GATACTGCGTACAGTACCATGAAGCGCGCCACCAAAAG--GCAGCCTTCTA--CAGCGTG 156 Query 32231 -TAGATTTACAAGGTTCAACCGATGCAGGTCGCGTATTGAATACGTACACCCACTCAACG 32289 | ||| | || |||||||||||| |||||| |||| || ||| ||||| || Sbjct 157 CTGGATCTGCAGGGTTCAACCGATAGCGGTCGCTGGCTGAACACCATCACACACTCCACC 216 Query 32290 TTCGGTGAATACATCGATGACGTGGTCAACCTTGCGGCATTTGTCAATGCGTTGAAAGTT 32349 | ||| || ||||| ||||||||||||||||||| || ||| |||| || || Sbjct 217 TACGGCGAGTACATTGATGACGTGGTCAACCTTGACGCGTTTATCAACTTCCTGCGTGTA 276 Query 32350 ACGCTATACAACACCATTGCAAATAATACCACGAAGGTGGGTCAAGATACC-GTAGGTCA 32408 || |||||| | | || || | || || ||| || | ||| ||| |||||||| Sbjct 277 GGCCTGTACAACGCACTGGCGAACCAGACGACCAAGCTGCCAC-AGACACCTGTAGGTCA 335 Query 32409 ATCTTTGATTATCGGTGCGGCCAAAACTGTAGGTGAGCAGTATATTAGCAACGGTTATTT 32468 | | | || ||||| || || || ||||||||| | | ||| ||| | Sbjct 336 GGCGGTTCTGATTGGTGCAGCGAAGCGCGTGTGTGAGCAGTTCGTGCGTAACAACTATCT 395 Query 32469 AGGTGAACGTTTCTATACCGATCCCGATGACGCCGTGGAGAAATTCACACGTGGTTATGA 32528 || || ||||| ||| || ||| || |||| | |||| ||| ||||| Sbjct 396 CGGACCGCGCAACTATATCGACCCGGATACCGGTCTGGACGCTTACACAATTGGCTATGA 455 Query 32529 AATTTTAACCCAACCTGAAGATATCCTTAACCTCAGTGATGCAGATCGCGCGGCCCGTAA 32588 |||| | ||| | || |||||||| || |||| ||||| || || || || ||| Sbjct 456 AATTCTGACCAAGCCGGAAGATATTCTGGACCTGTCAGATGCTGACCGTGCTGCACGTCT 515 Query 32589 ATCAGCGCCATTGCGTATTCGTATTTTCCGTAAGGGTGCAATCCACGCCGTTGACGTAAC 32648 | |||||| | || | || | ||||| |||||||| || ||| || | Sbjct 516 GGCTGCGCCAATCCGCGTGCGCGTGTTCCGCTCTGGTGCAATTCATATTTGTGATGTGTC 575 Query 32649 TGTTGACGTGTACTA--AGGAGTAGTGAGTAATGGCGTTAAATAATTTCTCGAATGCAAA 32706 |||||||| || || | | | | | | ||| | | | || || | |||| Sbjct 576 AGTTGACGTTTATTAATACGGGGATTTAAATATGTCACTGCAAAACTTTAGTACATCAAA 635 Query 32707 TTTTGTATTCTCGCTAAATGGACGTGTGAT-CAGCGATTGGGGCGAAGCGGCTAACCCTT 32765 | || || || | || || ||| | || ||| |||| || || | |||| |||| Sbjct 636 CTCCGTGTTGACGATTAACGGTCGTATAATGCAG-GATTTTGGTGAGACAGCTACACCTT 694 Query 32766 GTAATGAGGAACCGATGAACCCTAAAGC---CACTA-TGCGGAAGGGTCAAGGTGGTAAC 32821 | || ||||| || ||| ||| || || | || ||||| |||||||| Sbjct 695 ACACAGATGAACCAATTGACC----AGCGTTCAGTATTACGTCGTGGTCAGGGTGGTAAT 750 Query 32822 GCCGTAGCGCTAGATCACCCTAACCCGGGTCGTCGTGTCACGCTGTCTCTTAACCCCGGC 32881 || || || || | | ||| |||||||| || || ||| | | | ||||||| ||| Sbjct 751 GCTCTACGACTTGACCGCATTAATCCGGGTCGCCGCGTGACGGTTTATTTTAACCCAGGC 810 Query 32882 GGTAAC--GATTCGGCATACGTGCAAGGGTTGTT------CAATTCAAACGCTGTAGTAA 32933 | || || || || ||| ||||||| ||||| |||| | ||| || || | Sbjct 811 --TCACCTGACTCTGCCTACATGCAAGGATTGTTTAACAGCAATGCTAACATTGAAGCCA 868 Query 32934 CGTGTTCGAAACAGCAGATCGGCACACTTGAAGCCGCGGTAGGTACTGAAGGCCGTATCG 32993 |||| || ||||| || || | || || ||||||||| | ||||| || | Sbjct 869 CGTG---GA---CTCAGATTGGTACTTTGGATGCTGCGGTAGGTGCAGAAGGTGTGATTG 922 Query 32994 TTAACGATGGTCCAGTGGGGCGCGGTGGGGCAACCAACATTACCGACGATGTGTATATCA 33053 | ||||||||| | ||||| | ||| |||| ||| | || || || |||| Sbjct 923 TCAACGATGGTGCTCGCGGGCGTGTTGG---TACCACCATCAGTGATGACCAGTTCATCA 979 Query 33054 TTGAGTTCAACACATGGTCAG 33074 | |||||||| ||||||| Sbjct 980 TGGAGTTCAATGTTTGGTCAG 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142010325124200