Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019524.1 Length=60364 Score E Sequences producing significant alignments: (Bits) Value seq60383 178 5e-40 seq129722 98.7 4e-16 seq98424 89.7 2e-13 >seq60383 Length=344 Score = 178 bits (196), Expect = 5e-40 Identities = 257/353 (73%), Gaps = 20/353 (6%) Strand=Plus/Plus Query 16686 CCCGTGTAGCGCCATTCGTGGCACCGAACGTCCAAGGTCGCGTGATCAAGGAAGAAGGTT 16745 |||| ||||| || | |||||| ||||||||| | || ||||| ||||| |||||||| Sbjct 1 CCCGCGTAGCACCTTACGTGGCGCCGAACGTCGAGGGCCGCGTTATCAAAGAAGAAGG-- 58 Query 16746 ACTCTACCAAAACG---TTCAAACCTGCTTATGTAAAACCTAAGCATGTTATCGATCCTA 16802 || ||| | | ||||| |||||||| || ||||||||||| ||||||||||| | Sbjct 59 -CTGGACCGCGATGCGATTCAAGCCTGCTTACGTTAAACCTAAGCACGTTATCGATCCAA 117 Query 16803 ATATGTTCGTTCCGCGTCAGCCGGGCGAAG--CGTTGGGTACTGGCTCCCTGTCAATCGC 16860 | || | | || ||||| ||||||| ||| ||||| | ||||| | | Sbjct 118 ACCTGATTATCCCTGTGCAGCCAGGCGAAGACCGTAC---ACTGGTACGCTGTCTCTGTC 174 Query 16861 ACAGCGCCGTGACCGCGTAATCGCATTCCTGCTGATGAAGCACCGCGCGATGCACGAAAA 16920 |||||||||||||| || ||||||| |||||| ||||||||||| |||||||||| ||| Sbjct 175 TCAGCGCCGTGACCGTGTTATCGCATACCTGCTTATGAAGCACCGTGCGATGCACG-AAA 233 Query 16921 CACTTGGGAGTGGATGGCAGCACAGGCCGCGCAGT-TCGGCTATGTTGACGTACAAGG-- 16977 ||| ||||| || | | | || ||||| | || | ||||| || || | |||| Sbjct 234 CACATGGGAATGCAGGACGGCGCAGGCTG-TCATTGACGGCTTCGTGGATATCGAAGGTA 292 Query 16978 -CCA--AGACTACCCGCAAGTGCGTGTTGACTTCGGTCGTGACGCCGCGCTGA 17027 | | || |||||| |||| ||||| |||||| |||||| || | |||| Sbjct 293 TCGAGGTGATTACCCGAAAGTACGTGTCGACTTCCAGCGTGAC-CCTCTCTGA 344 >seq129722 Length=886 Score = 98.7 bits (108), Expect = 4e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 20149 ACTACTACTTCCCTAAAGTGTCATTAGCGCCAGATGGTGACTATGCGCTGAAAGGTGATG 20208 |||||| |||||| |||||| | | ||| ||||| |||||||||||||| ||||||| Sbjct 11 ACTACTTCTTCCCGAAAGTGGCGCTGCAGCCGGATGGCGACTATGCGCTGAAGGGTGATG 70 Query 20209 ACTGGCAGGTAATGTCGTTCACGT 20232 |||||||||| ||||||||||||| Sbjct 71 ACTGGCAGGTTATGTCGTTCACGT 94 >seq98424 Length=301 Score = 89.7 bits (98), Expect = 2e-13 Identities = 96/124 (77%), Gaps = 6/124 (5%) Strand=Plus/Plus Query 28131 TTTAACAATCTAGACAACTACGGCGGTGTTCCATCGC--TGCCAGACCGCTCGCCGTTCG 28188 |||||||| || ||||| || ||||| | |||| | |||| ||| |||||||| | Sbjct 179 TTTAACAACCTGGACAATTATGGCGGCAT--CATCTCAATGCCGTCCCGTTCGCCGTTTG 236 Query 28189 ACGGCAATCCATTATTCTAAGGAGAACTAAATATGTGGTGGGCACTAGCAATGCTTGTGG 28248 ||||||||||| | |||||||| ||| | ||||||||||||| |||| ||||| || | Sbjct 237 ACGGCAATCCAGTCTTCTAAGGGGAA--AGCTATGTGGTGGGCATTAGCCATGCTGGTCG 294 Query 28249 CGTC 28252 ||| Sbjct 295 TGTC 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192744501843600