Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq40411 172 4e-38 seq64526 93.3 3e-14 seq34483 82.4 5e-11 seq31229 82.4 5e-11 >seq40411 Length=1793 Score = 172 bits (190), Expect = 4e-38 Identities = 278/397 (70%), Gaps = 6/397 (2%) Strand=Plus/Plus Query 28560 AAGGAGTAACTGACAAAGGTTACTTAACAAACTCATTCCACTTAGACGTACTGAAGAAGG 28619 |||| || || ||||||||||| | || ||| ||||| | ||||| |||||||| Sbjct 512 AAGGCGTGACCGACAAAGGTTATTACACCAACAGCTTCCATCTGGACGTTGAGAAGAAGG 571 Query 28620 TAAACCCGTATGATAAAATCGACTTTGAAGCGCAATTCATCCCATACAGCTCC---GGTG 28676 | || || || || |||||||| |||||||| | | |||| || |||| || | Sbjct 572 TGAATCCTTACGAAAAAATCGATTTTGAAGCTCCCT--ATCCGCCACT-CTCCAATGGCG 628 Query 28677 GTCATATCTGCTACGGGGAATTCCCTAATATGCGCCACAATATTGAAGCACTCGAAAATG 28736 || |||||| ||||| |||| || ||| ||| ||||| || | || || ||| | | Sbjct 629 GTTTTATCTGTTACGGCGAATATCCCAATGTGCAGCACAACCTTAAGGCGCTGGAAGACG 688 Query 28737 TGTGGGATTACGCCTACACCAAAGTCCCATACTACGGCACCAACACACCAATTGATGAAT 28796 | ||||||||| |||| | || || ||||||||||||||||| |||||||| |||| Sbjct 689 TCTGGGATTACAGCTACGACCGCGTGCCTTACTACGGCACCAACACGCCAATTGACGAAT 748 Query 28797 GCTATAGCTGCGGATTCAAAGGTGAGTTCAATTGTACAAGCAAAGGTTTTGAGTGTCCTA 28856 | || ||| || ||||| || || |||| ||||| ||| || ||| || || | Sbjct 749 GTTACGACTGTGGCTTCAACGGGGAATTCACCTGTACCAGCCGCGGATTTACCTGCCCGA 808 Query 28857 ACTGCGGAAACCACGACCCAGAGAAATGCTCTGTCACCAGACGAGTGTGTGGCTACCTAG 28916 ||||||| || ||||| || | || ||||| | || || |||||||| || | Sbjct 809 ACTGCGGCAATCACGATCCTGCACGGGTTTCGGTCACACGGCGGGTTTGTGGCTATCTGG 868 Query 28917 GTAATCCTGGTACTCGTCCATTCAATGCAGGTAAACA 28953 | | ||| | | || || || ||||| || ||||| Sbjct 869 GCAGTCCGGACGCGCGCCCGTTTAATGCGGGAAAACA 905 >seq64526 Length=563 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29340 GAAATCAATGTAGAAAAAGACATTCAAGATATTCGCGTTAATATGACCCCAGCAGAGTCT 29399 || || || ||||| || ||||| ||||| | | ||||| ||||| | ||| ||| | Sbjct 360 GAGATTAACGTAGAGAAGGACATCCAAGACCTGAGAGTTAACATGACTCAAGCTGAGAGT 419 Query 29400 CATGGTGTTATTACCACCTTGAAACTATTTACTCTGTATGAGCTAGTATTAGGTAATGAA 29459 ||||| || || |||| ||||||| ||||| || || ||||| ||| || |||||| Sbjct 420 CATGGCGTCATCTCCACACTGAAACTGTTTACGCTATACGAGCTGGTAGCTGGGAATGAA 479 Query 29460 TATTGGGGCGGACGATTTAAGCGTATGTTCCCTCGTCATGA 29500 || ||| || ||| | | | ||||||||||||| ||| Sbjct 480 TACTGGCTGGGTCGAGTGAGGAACATGTTCCCTCGTCCTGA 520 >seq34483 Length=1392 Score = 82.4 bits (90), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 45236 GCGCCCTTAGCTCAGCTGGATAGAGCACGTCCCTTCTAAGGATGTGGTCGTAGGTTCGAA 45295 |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| Sbjct 1235 GCGCCCTTAGCTCAGCTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAA 1294 Query 45296 TCCTACAGGGCGTGCCATCTTT 45317 |||| |||||| |||| |||| Sbjct 1295 TCCTGTAGGGCGCGCCA-CTTT 1315 >seq31229 Length=3871 Score = 82.4 bits (90), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 45236 GCGCCCTTAGCTCAGCTGGATAGAGCACGTCCCTTCTAAGGATGTGGTCGTAGGTTCGAA 45295 |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| Sbjct 128 GCGCCCTTAGCTCAGCTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAA 69 Query 45296 TCCTACAGGGCGTGCCATCTTT 45317 |||| |||||| |||| |||| Sbjct 68 TCCTGTAGGGCGCGCCA-CTTT 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356127958146100