Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq31280 136 6e-27 seq27013 116 5e-21 seq66454 105 1e-17 seq91339 93.3 6e-14 seq89340 86.0 9e-12 seq85980 86.0 9e-12 >seq31280 Length=10079 Score = 136 bits (150), Expect = 6e-27 Identities = 225/323 (70%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 119939 GTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGT 119998 ||| || |||| || | ||| | || || |||| ||||||||| || || ||| || Sbjct 1395 GTTGTTTTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGT 1454 Query 119999 AGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTT 120058 || | ||||||||| | | || ||||||||| || ||||| || ||||||||||| Sbjct 1455 CGCTGCGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTT 1514 Query 120059 GTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGC 120118 |||||| ||||| ||||||||| ||||| ||| |||||| || ||| ||| Sbjct 1515 GTAGAACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGC 1574 Query 120119 ACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATA--TAACTAATAATA 120176 || ||| ||| || |||||||||||||| || ||||| ||| | || | | |||| Sbjct 1575 GCGGATACGACCCGCGTTAATACCAATACCTGCGCGTTG--TGAAACGTATTTCACAATA 1632 Query 120177 GATGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACGAA 120236 | || || |||| || || | ||| ||||| ||||||| ||||| || Sbjct 1633 GCGCTGGAGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAG 1692 Query 120237 CTAAATTGGCGCGTTGGGGTGCG 120259 || || || || ||||| || || Sbjct 1693 CTGAACTGACGGGTTGGCGTACG 1715 >seq27013 Length=32742 Score = 116 bits (128), Expect = 5e-21 Identities = 239/350 (68%), Gaps = 14/350 (4%) Strand=Plus/Minus Query 85897 AATTTAACATACAGTTCTTGGAGAGATACGATATCATCAA---TATTATATTCTTCCATT 85953 ||||| |||||||||||||| || | ||| |||||| | || || ||||||||| Sbjct 5633 AATTT--CATACAGTTCTTGGTTTGACA--ATA-CATCAAACTTGTTGTAATCTTCCATT 5579 Query 85954 TCTTTCCAAGCTTCTACATTACCAGCCAAACATTCTTTCCACAATTCGAAACCGGGGAAT 86013 |||| ||||||||| | |||||| | ||| || |||||| | |||||| ||| Sbjct 5578 TCTTCCCAAGCTTCCATATTACCTTTAAGACACTCAGACCACAAGGCAAAACCGCTGAAC 5519 Query 86014 TGAGTATGTTTAGATTTCTTGGTTTCTGTACATAGCTTATCGGTCATATATTCCAGCTTA 86073 | | ||||||| ||||||||| | | | || |||||||| || | ||| || || || Sbjct 5518 TTATTATGTTTGGATTTCTTGTACTTTTTGCAAAGCTTATCAGTAAGATACTCAAGTTTG 5459 Query 86074 TTGGAAGTAAAACCAAACGTGCGTTTTGCGATCTCAAGAGTATCAATATGCTTCACGGTA 86133 || ||||||||||| ||| | ||||| || || || ||||| || | |||| Sbjct 5458 TTAGAAGTAAAACCGAACAGACTCTTTGCAATTAACAGCGTGTCAATGTGACGGAAGGTA 5399 Query 86134 GAGAACGGTT---TCATACCATGAACAATCATACGACTGCGAATCTTTGGAATATCAAAC 86190 | | |||| |||| || | || | | ||| | ||||||| || ||||||| Sbjct 5398 G---ATGGTTTGGTCATGCCGTTAATTAAGAATCGAGAGAAAATCTTTTTAACATCAAAC 5342 Query 86191 CGACGACCATTCTGATGAAGAACGATATCTGCTTCATCAAGAAGCTCCCA 86240 | ||| ||| | ||| | ||||||||| ||||| | ||||| Sbjct 5341 TTCTTAGTATTATGACCCACAACAAAATCTGCTTCGTCAAGTAATTCCCA 5292 >seq66454 Length=1623 Score = 105 bits (116), Expect = 1e-17 Identities = 84/99 (85%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 198919 AAAGAACATATC--ATTTGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCG 198976 |||||| ||| | |||||| ||||||||||||||||||||||||| | ||||||||| | Sbjct 1307 AAAGAA-ATAACTAATTTGGTCCCTTAGCTCAGTTGGTTAGAGCAGGCAACTCATAATTG 1249 Query 198977 GTTGGTCACTGGTTCGAGTCCAGTAGGGGCCACCAGATA 199015 | |||| ||||||||||||||| |||| ||||| ||| Sbjct 1248 CTCGGTCGCTGGTTCGAGTCCAGCAGGGATCACCAAATA 1210 >seq91339 Length=1026 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21791 GCGAACATATCCATTGCAGCAATAGCCAGATCTACAGCCTCACCACGAATACCATCTTTA 21850 || ||||||||||||||| ||| || | ||| ||||| ||||| || |||||| | Sbjct 528 GCAAACATATCCATTGCACAAATCGCTAAATCAACAGCTTCACCTGCAACACCATCAACA 469 Query 21851 CCCGGTTCCTTGTAAGACAAACCGTTTTCAATCTGTACCTCCAAAGACAGTTCTCCGAGT 21910 || | ||| |||||||| | ||| |||||||| || | || | |||| ||| || | | Sbjct 468 CCAGCTTCTTTGTAAGAAAGACCCTTTTCAATTTGATCTTCAACTGACAATTCACCTAAT 409 Query 21911 TCTTCCATACATTT 21924 |||||||| ||||| Sbjct 408 TCTTCCATGCATTT 395 >seq89340 Length=694 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 199780 TTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCG 199838 ||||| | |||||||| |||||||||||||| ||| ||||| ||| |||| |||||||| Sbjct 88 TTCGGAGTGTAGCGCAGCTTGGTAGCGCGTCTCGTTCGGGACGAGAAGGTCGCAGGTTCG 29 Query 199839 AGTCCTGTATCACCGACCA 199857 | |||||| || ||||||| Sbjct 28 AATCCTGTCTCTCCGACCA 10 >seq85980 Length=428 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 199780 TTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCG 199838 ||||| | |||||||| |||||||||||||| ||| ||||| ||| |||| |||||||| Sbjct 341 TTCGGAGTGTAGCGCAGCTTGGTAGCGCGTCTCGTTCGGGACGAGAAGGTCGCAGGTTCG 400 Query 199839 AGTCCTGTATCACCGACCA 199857 | |||||| || ||||||| Sbjct 401 AATCCTGTCTCTCCGACCA 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740241963964000