Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq28361 277 6e-70 seq43510 172 2e-38 seq2347 156 1e-33 seq51075 129 2e-25 seq60516 100 9e-17 seq104855 89.7 2e-13 >seq28361 Length=3781 Score = 277 bits (306), Expect = 6e-70 Identities = 503/732 (69%), Gaps = 8/732 (1%) Strand=Plus/Minus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 || || || || |||||||| | || | || || | ||| |||| ||||| ||||| Sbjct 2675 GACCGTACCGGTACAGGCACGCTTTCAATTTTTGGTCACCAGATGCGTTTTAATCTGCAG 2616 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 || || || || || || ||||| ||||||| ||| | ||||| |||||| |||| ||| Sbjct 2615 GATGGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCATGAGCTG 2556 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 || |||||| | |||| || || || || | || || | || || ||| | || Sbjct 2555 CTGTGGTTTCTGCAAGGGGACACCAACATTGGTTACCTGAAAGAAAACAATGTCTCTATC 2496 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||||| |||||||| ||||| | ||| |||| || || | |||||| || ||||| Sbjct 2495 TGGGATGAGTGGGCAGATGAGCAGGGCAATCTGGGACCGGTATACGGCAAACAGTGGCGT 2436 Query 45734 TCGTGGAA-AGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAAT 45792 ||| | | | | | ||| | | | || || || | || || | | || Sbjct 2435 AGCTGGGGCACCGCCCGTGGCGAAGA-GATTGATCAGATCACCAAAGTGATTGAACAGAT 2377 Query 45793 CAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGG 45852 ||||||| | ||| | || || || | |||| ||||||||||||| | ||| Sbjct 2376 CAAGCGCGATCCGGATTCCCGCCGCATCATTGTCTCGGCGTGGAACGTGGGCGAACTGGA 2317 Query 45853 GGAAATGAAGTTGCCCCCATGTCATTACGCCTTT---CAGTTTTACGTCGCGAATGGCCG 45909 |||||| | || | || || ||| |||||| ||||| ||||||||| ||||| | Sbjct 2316 TGAAATGGCGCTGGCTCCGTGCCAT---GCCTTTTTCCAGTTCTACGTCGCGGATGGCAG 2260 Query 45910 GTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACAT 45969 | | || || | | |||||||| ||| | || || || ||||||||||||| Sbjct 2259 GCTCTCCTGTCAGCTTTACCAGCGTTCCTGCGACATTTTCCTGGGGCTGCCGTTTAACAT 2200 Query 45970 CGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCGA 46029 ||| |||||||||||| || |||||||| || ||||| ||||| || || ||||| || Sbjct 2199 CGCCAGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGA 2140 Query 46030 ACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACT 46089 | | | ||||||||||| || | |||| || || ||||| || ||| || Sbjct 2139 CTTTGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCT 2080 Query 46090 GCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTC 46149 ||| ||||||||||| ||||| || | |||||||| ||||| ||||| ||||| | || Sbjct 2079 GCAACTGACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCTC 2020 Query 46150 TATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGAT 46209 | ||||||||| | ||| |||||||| ||| || || || ||||| || || || Sbjct 2019 GCTGTTTGACTATCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCAT 1960 Query 46210 TAAGGCTCCTGT 46221 || || || || Sbjct 1959 CAAAGCGCCGGT 1948 >seq43510 Length=3912 Score = 172 bits (190), Expect = 2e-38 Identities = 381/569 (67%), Gaps = 2/569 (0%) Strand=Plus/Minus Query 45438 TGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGATC 45497 |||| || || || ||| ||||||| || | | || | |||| ||||||| || | Sbjct 1216 TGAAGCAGTACCTGGACCTGCTGCAGCACGTGCTGGAGCATGGCGCGGAGAAATCCGACC 1157 Query 45498 GGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACG 45557 | || || || ||||| ||||||||| | ||| |||| || || | | |||| Sbjct 1156 GCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGTTTCGACCTCAACGACG 1097 Query 45558 GATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCT 45617 | ||||| || || || || || ||| |||| | ||||||||| | | || |||| | Sbjct 1096 GCTTCCCCCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAGTTGCTGT 1037 Query 45618 GGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGG 45677 |||| | || ||||| || || | |||| | |||| || || | || |||| Sbjct 1036 GGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCATCTGGG 977 Query 45678 ACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGT 45737 ||||||||||||||| | ||||| |||||||| | |||||| ||| |||||| | Sbjct 976 ACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAGTGGCGGCGCT 917 Query 45738 GGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGG-TCTTTAAGGAAATCAAG 45796 ||| || || ||||| | ||||||| | ||| | || | | | || |||||| Sbjct 916 GGACCGGCGCCGACGGCCGCGAGATCGACCAGA-TGCAGTGGCTGGTGGACGAGATCAAG 858 Query 45797 CGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAA 45856 ||||| ||| | ||||||||| || | | ||||| ||||||||||| | || | | Sbjct 857 CGCAATCCGGATTCGCGGCGGCTGGTGATCAGCGCCTGGAACGTGGCCGAACTGCCGCAG 798 Query 45857 ATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCA 45916 ||| | || || || || | || ||||| ||||| | | ||| | | Sbjct 797 ATGGCGCTGATGCCGTGCCACAGCCTGTTCCAGTTCTACGTGGTCGACGGCAAGCTCAGC 738 Query 45917 TGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAGC 45976 ||| | | | ||||| | ||| | || || || ||||||| |||||||| ||| Sbjct 737 TGCCAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGTTCAACATCGCCAGC 678 Query 45977 TATGCGCTGTTGACACATATGGTTGCCCA 46005 || |||||| |||| || ||||| || || Sbjct 677 TACGCGCTGCTGACCCACATGGTGGCGCA 649 >seq2347 Length=4848 Score = 156 bits (172), Expect = 1e-33 Identities = 400/605 (66%), Gaps = 8/605 (1%) Strand=Plus/Minus Query 45521 GTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAA 45580 || |||||| ||| || | || || || || || || || || || || || || Sbjct 2039 GTCTTCGGCTACCAGATGAGATTCGACCTGGCCGAGGGCTTTCCCCTGGTCACCACCAAG 1980 Query 45581 AAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAAT 45640 || | ||| | | || ||||| | |||||||| ||||| | | ||||| || ||| Sbjct 1979 AAATGCCATCTGAGATCCATCATCCACGAACTGCTGTGGTTCCTGCAGGGCGAGACCAAT 1920 Query 45641 GTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGC 45700 | ||||| || |||| ||||| ||| | || |||||||| |||||||| || ||||| Sbjct 1919 ATCCGCTACCTGAAGGACAATGGCGTGTCCATCTGGGACGAATGGGCCGACGAGAACGGT 1860 Query 45701 GATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACG 45760 || || || || |||||||| || ||||| ||| | | || || Sbjct 1859 GAGCTGGGACCGGTCTACGGCTACCAGTGGCGCAGCTGGCCGGCACCCGATGGTCGCCAT 1800 Query 45761 GTCGACCAAATTGCGGCGGTCTTTAAGGAAATCAAGCGC---AACCCGAACTCGCGGCGG 45817 ||||||| || || | ||| | ||| || | ||| || || |||||||||| Sbjct 1799 ATCGACCAGATCGCCGGGGTGGT---GGACATGATCCGCGCCAAGCCCGACTCGCGGCGC 1743 Query 45818 TTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCAT 45877 || | || || ||||| ||| | ||| || ||| | |||| || || ||| Sbjct 1742 CTGATCGTCTCGGCCTGGAATCCGGCCCTGGTGGACGAGATGGCGCTGCCGCCGTGCCAT 1683 Query 45878 TACGCCTTTC-AGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTC 45936 ||| ||| |||| || ||||| |||| || || ||| | | | ||||| || Sbjct 1682 G-CGCTGTTCCAGTTCTATGTCGCCGATGGTCGCCTGAGCTGCCAGCTGTATCAGCGCTC 1624 Query 45937 TGTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATAT 45996 | ||| | || || || |||| || |||||||| |||||||||||| |||| | || Sbjct 1623 CGCCGACATCTTCCTCGGCGTGCCCTTCAACATCGCCAGCTATGCGCTGCTGACCCTGAT 1564 Query 45997 GGTTGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCA 46056 ||| ||||| || || | |||||| |||| | |||||||| || ||| Sbjct 1563 GGTGGCCCAGGTCACCGGGCTGCAGCCGGGCGAATTCATCTGGACCGGCGGTGATTGCCA 1504 Query 46057 TTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCT 46116 | | || ||||| ||||| || | | ||||||||||| |||||||||| ||||| Sbjct 1503 TCTCTATGCCAATCACCTGGAGCAGACCGATCTGCAGCTGACCCGCGAGCCGCTGCCGCT 1444 Query 46117 GCCGA 46121 ||||| Sbjct 1443 GCCGA 1439 >seq51075 Length=376 Score = 129 bits (142), Expect = 2e-25 Identities = 228/326 (70%), Gaps = 5/326 (2%) Strand=Plus/Plus Query 45521 GTGTTCGGCCGTCAGCTGCGCTTTAACTT-GCAGGACGGATTCCCGCTCGTGACGACGAA 45579 || |||||| ||| ||||||| || | || | | | |||||| || | ||||| || Sbjct 51 GTCTTCGGCGCGCAGATGCGCTTCGACCTCGCCGAAGGCTTTCCCG-TCCTCACGACCAA 109 Query 45580 AAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAA 45639 ||| |||| | ||||||||| | | || |||| ||||| | || ||||| || || Sbjct 110 GAAGCTGCACCTGCGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGCGAGACCAA 169 Query 45640 TGTTCGCTATTTGCAGGAGAATGGTGTGA-CGATTTGGGACGAGTGGGCCGATGAAAACG 45698 | |||| | |||| || || | | || ||||||||||||||||||| | | Sbjct 170 CATCGCCTATCTCAAGGACAACAAGGTCAGCCATCTGGGACGAGTGGGCCGATGCGCAGG 229 Query 45699 GCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAA 45758 |||| |||||||| | |||||| ||| |||||| |||| || || ||||| Sbjct 230 GCGAACTCGGCCCGGTGTACGGCAAGCAGTGGCGGCGCTGGACCGGCGCCGACGGCCGCG 289 Query 45759 CGGTCGACCAAATTGCGGCGG-TCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGG 45817 | ||||||| | ||| | || | | | || ||||||||||| ||| | ||||||||| Sbjct 290 AGATCGACCAGA-TGCAGTGGCTGGTGGACGAGATCAAGCGCAATCCGGATTCGCGGCGG 348 Query 45818 TTGCTTGTGAGCGCGTGGAACGTGGC 45843 || | | ||||| ||||||||||| Sbjct 349 CTGGTGATCAGCGCCTGGAACGTGGC 374 >seq60516 Length=573 Score = 100 bits (110), Expect = 9e-17 Identities = 169/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 45488 AAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAAC 45547 || ||||| || || || || ||||| | |||||||| ||| ||||||| ||| Sbjct 83 AAGGAAGACCGTACCGGCACCGGCACCTACAGCGTGTTCGGTTACCAGATGCGCTTCAAC 142 Query 45548 TTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTAT 45607 || || || ||||| |||| || || || |||| || | || ||||| || Sbjct 143 CTGGCCGATGGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCAT 202 Query 45608 GAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTG 45667 ||||| || ||||| | | || ||||| ||| | || || |||| || || || Sbjct 203 GAACTACTGTGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGTC 262 Query 45668 ACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAA 45727 | || ||||||||||||||||| || |||||| | |||||||| | |||||| || Sbjct 263 AGCATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTATACGGCTACCAG 322 Query 45728 TGGCG 45732 ||||| Sbjct 323 TGGCG 327 >seq104855 Length=425 Score = 89.7 bits (98), Expect = 2e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 35843 CAAACGCCCGACGATGGCAGACCTTCGAGAGTCGGGAAGCATCGAGCAAATTGCTGATTT 35902 ||||||||||| |||| | || || || ||||| ||| |||||||| ||| || | Sbjct 425 CAAACGCCCGATGATGTCCGATCTGCGCGAGTCAGGAGCGATCGAGCAGGATGCAGACGT 366 Query 35903 GATTGCCTTCCTGTACCGCGAGGACTATTACAATCGGGACGCTGAACAAACAGGA-ATCA 35961 | |||| |||||||| || || ||||| ||||| | |||| ||| | || || | |||| Sbjct 365 GGTTGCTTTCCTGTATCGGGATGACTACTACAACCAGGACACTG-AGAAGAAGAACATCA 307 Query 35962 CAGAAATTATTGTTGCCAAAAACCGTAACGG 35992 ||||||||| | |||| | |||||||| Sbjct 306 TCGAAATTATTATCTCCAAGCAGCGTAACGG 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157506310834200