Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq48793 219 1e-52 seq38246 201 3e-47 seq44356 141 3e-29 seq70398 120 9e-23 seq43257 118 3e-22 seq57448 116 1e-21 seq46473 113 1e-20 seq58927 93.3 1e-14 seq37294 87.8 5e-13 seq93648 80.6 8e-11 >seq48793 Length=1217 Score = 219 bits (242), Expect = 1e-52 Identities = 457/672 (68%), Gaps = 19/672 (3%) Strand=Plus/Minus Query 34755 GCCAGATCTGGACTTCAACAACACTGACTGGGCCTATGGGGTGATCCGATGAAATCTCTT 34814 ||||| ||||||| ||||||||| |||||| | | ||||||||| |||||| || Sbjct 839 GCCAGCCCTGGACTACAACAACACCGACTGGATCCACGGGGTGATCGAATGAAAAGCATT 780 Query 34815 GCAGAGCAGATGCGTAACCACGACCGCGAGCAGATGAGCCGCATGGCCCATAAC---CTG 34871 || || |||||| ||||| ||||| || | |||| || | || |||| ||| Sbjct 779 GCTGAACAGATGGTTAACCTTGACCGTGAAAACATGAAACGTGTTGC---TAACGGTCTG 723 Query 34872 CCAGAGCAGTACCAGGAG--TGCGCGAC----GGTCGAGCAGGTGGCGCAGGTATTCAAC 34925 | || | | |||||| ||| | | || |||| ||| || | | || || Sbjct 722 GCGGA--AAT-CCAGGACGATGCACCGCAGCAGGCAGAGCGGGTAGCCGAAATTTTTAAT 666 Query 34926 AAGCTGTTCAACGAGCTGCGCGCCGCGTTCCCGGCCAGCATGGCGAACTTCCGCACCCAG 34985 | ||| || || |||| || || |||||||| |||||| || | || |||||| Sbjct 665 ACGCTCTTTGGTCAGTTGCGTGCGGCTTTCCCGGCTGCCATGGCAAATCTGCGTACCCAG 606 Query 34986 GAAGACCTGAACGAATTCCGCCGTCAGTGGCTGCTGGCGTTTCAGGAGAACGGGATCCAC 35045 || || || ||||||||||| || |||||||| || | || | |||||||||||| | Sbjct 605 GAGGAACTAAACGAATTCCGGCGCCAGTGGCTTTTGTCATTCCGCGAGAACGGGATCACC 546 Query 35046 ACCATGGCTCAGGTCGATGCCGGCATGCGCATTGCCCGCCGCCAGGAGCGCCCATTCCTG 35105 || |||||||||||| | || |||||||| ||||| ||||| || |||||| Sbjct 545 ACAATGGCTCAGGTCAACGCTGGCATGCGGGCAGCCCGTAAACAGGAAAAACCCTTCCTG 486 Query 35106 CCGTCGCCGGGCCAGTTCGTCGCCTGGTGCAAGCAGAGCGGCGGCGCGCTGGGCGTCAAC 35165 || || ||||| |||||||||||||||||| || || ||||| | || ||| | Sbjct 485 CCTTCCCCGGGTCAGTTCGTCGCCTGGTGCCGTGAGGGCAAGGGCGCATTAGGGATCACC 426 Query 35166 GTTGACCAGGTGATCGCCGAATACTGGGACTGGCGTA-ACCGCTCGTTCGAATTCATCTC 35224 | | ||||| | |||| |||| ||||||| | || | ||| | | | Sbjct 425 GCCGCTGAGGTGCTTAAAGAATTCTGGCACTGGCGCAGGACGGT--TTCCGGTACCCGAC 368 Query 35225 CAGCGAGCAATTTCCATGGTCGCAGCCGGTCATGTACCACATTTGCGTAGAATTGCGCCA 35284 |||||| |||| ||| ||||| ||| |||| ||||| ||||| ||| | ||||| |||| Sbjct 367 CAGCGAACAATATCCGTGGTCACAGGCGGTTATGTATCACATCTGCCTGGAATTACGCCG 308 Query 35285 CCGCAGCACCGAGCGCCAGTTAACGCATGGTGAACTGGCACGCGAGGCAGGCGATCTGCT 35344 |||||||| ||||| ||| | || | ||||||| |||||| | ||| | Sbjct 307 CCGCAGCAATGAGCGTCAGCTTACCGAACCTGAACTGCTGGCCGAGGCTAAAAAGCTGAT 248 Query 35345 GGACATGTGGGAAAGGCGCGTCACCGAGGGTAAGCCAGTGCCGCCGGTACGCCGGGCTAT 35404 | ||||| ||||| || || || ||||| ||||| || || ||| |||| | Sbjct 247 TCAGTACTGGGATGACCGCGTTACTGA-GGCAAGCCTGTGCCACCCGTTCGCAAGGCTTT 189 Query 35405 TGCCGCACCAGC 35416 | || ||||| Sbjct 188 ATCAGCGCCAGC 177 >seq38246 Length=2704 Score = 201 bits (222), Expect = 3e-47 Identities = 311/443 (70%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 26374 CGCAGCGCTTCAAGGCGGCGCAGGTCGAAGTCGTTCAGTTCGTCGGTGTAGTCAGCAGTG 26433 |||||| |||||| ||||||| || || || ||||||||||||||||| || | || Sbjct 2156 CGCAGCATTTCAAGACGGCGCAAATCAAAATCATTCAGTTCGTCGGTGTAATCGTCGGTA 2215 Query 26434 ATTGGCGCTGGCCATTCACCTGTGTCGAATCCGGTTGCGATATTGCGCATCGCTTTGCGG 26493 || || || ||||| ||| ||||| | || |||||| ||| | ||||| Sbjct 2216 ATCGGTGCAGGCCAGATACCGGTGTCATACGCGCGGGCGATAGCTGACATGG---TGCGG 2272 Query 26494 T---ACTCGAGCATACCCAGCTCCAGTAGTTCAGCGGATGCCTCGATGATGGCGATCCAG 26550 | | || ||| ||||| || || | || || ||||| || | || | |||| Sbjct 2273 TGATATTCAAGCGAGCCCAGTTCAAGCAAATCCTGTGACGCCTCAATAACTGCTACCCAG 2332 Query 26551 TGGTAGTTCTCGTCTTTGTTGACGAAAATCCAGAAGAACTGATCCAGCGCTGCGGTTTCG 26610 |||||| ||||||||||||||| ||||| ||||||||||| | | || ||| Sbjct 2333 TGGTAGCCAGGGTCTTTGTTGACGAAGATCCAAAAGAACTGATCGAAGCCAGCAACCTCG 2392 Query 26611 CAGTACATAGCCGCGCTCAGGTGATAATCACGTTCAATAATTTCCCGGTGTAGCCTGGCG 26670 | ||||| |||||||| ||||| ||||| ||||| | ||||| ||||| || | |||| Sbjct 2393 GAATACATCGCCGCGCTGAGGTGGTAATCGCGTTCTGTGATTTCGCGGTGCAGGCGGGCG 2452 Query 26671 CGCAGGCTTTCCTGCTTAACATTCCACATGCTGATGGTTTTCAGGTCTGCACCTATACGC 26730 || | | |||||||||| | ||||||| ||||||||||||| ||| | || || Sbjct 2453 CGTAAGTAGTCCTGCTTAATGCGGCCCATGCTGGTGGTTTTCAGGTCAGCAGCAATGCGT 2512 Query 26731 ACGCCATCCAGGTCGATCTCAAGGTCAGGGCGCACACGAACTTCCAAGCCCGTCTCCTCG 26790 | ||| || | || | |||| || || || || || || || || || ||||| || Sbjct 2513 ATGCCGTCGATTTCCAGTTCAATATCTGGACGTACGCGCACCTCTAAACCGGTCTCGTCA 2572 Query 26791 TCAAAACCAAAGTAGCTCACCTC 26813 || | || ||||| |||||||| Sbjct 2573 TCCATGCCGAAGTAACTCACCTC 2595 >seq44356 Length=928 Score = 141 bits (156), Expect = 3e-29 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 36234 ATCGTTGATATCGGTATGCGGATGCTGCAACCGCACGAGCTATACCGCGTGCAGGGCTTC 36293 || || |||||||| ||||| ||||| || ||||| ||||| || | |||||| ||| Sbjct 379 ATTGTCGATATCGGCATGCGAATGCTACAGCCGCATGAGCTCTATGCTGCGCAGGGTTTC 438 Query 36294 CCGGAGTGGTACATCATCGATCAGGACTATCGGGGGCAGAAGTACGCGAAGGACAAGCAG 36353 ||| ||||| |||| |||| ||| ||||| || | || || || || || || ||| Sbjct 439 CCGTCCTGGTATGTCATTGATCGGGATTATCGCGGTAACAAATATGCCAAAGATAAACAG 498 Query 36354 GTTGCGCGTTGTGGCAACGCAGTTCCGCCGCCATTCGCCGAGGCACTGGTGAGAGCTAAT 36413 ||||| || || ||||| || ||||| ||||| || |||||||| || || ||||| ||| Sbjct 499 GTTGCCCGATGCGGCAATGCCGTTCCACCGCCGTTTGCCGAGGCGCTTGTAAGAGCCAAT 558 Query 36414 TTACCGGA 36421 |||||||| Sbjct 559 TTACCGGA 566 >seq70398 Length=531 Score = 120 bits (132), Expect = 9e-23 Identities = 256/369 (69%), Gaps = 19/369 (5%) Strand=Plus/Minus Query 15924 AACTGCGTTATCCA-AATACCGC-GCTGCTGTACATCGAATTCGACTCAAGCCAGTTTAA 15981 ||||||| || || |||||||| |||||| || || ||| | ||||| |||||||| || Sbjct 436 AACTGCGCTAGCCCTAATACCGCAGCTGCTTTATATTGAAGTGGACTCCAGCCAGTTCAA 377 Query 15982 CGGCTCTATCCCGCAAATATCCTGCGAACCGCGAGGGCGTGTAATCCGCGTTCCGGATAC 16041 ||| | ||| || | ||||| | || ||| | | ||||| || ||| Sbjct 376 CGGG-CAGGCCCCAAAGTCACCTGCAAGCCAAAAGGCAAACTGGTACGCGTCCCAACTAC 318 Query 16042 GTATGACCCGGAGACCCGCACCTACAGCGGCACATGGACAGGGGCGTTTAAGTGGGCGTG 16101 |||||||||| | ||| | ||| | |||||||||| |||| | ||||||| || | Sbjct 317 CTATGACCCGGTCAGCCGAAGCTATAACGGCACATGGTCAGGTGATTTTAAGTACGCCTA 258 Query 16102 GACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAGCGACCG---CTTTGGGCT 16158 || | ||||| || ||| | |||||||||||||| || ||| | | ||| | Sbjct 257 CACCAACAATCCGGCATGGGTCTTTTACGATCTGGTTCTG---GACAGAATTTATGGCAT 201 Query 16159 GGGCAATCG-CCTGACGGCGGCCAATATTGATAAATGGACGCTTTATCAG-GTCGCGCAA 16216 ||| | || |||| || ||| ||||| || ||| ||| || ||| |||||||| Sbjct 200 GGGAACGCGTGTTGAC-GCTTCCATGATTGACAAGTGGGAGCTGTA-CAGCATCGCGCAA 143 Query 16217 TATTGCGATCAGCCGGT-TCCTGATGGTAAAGGCGGTAGCGGCACTGAGCCTCGCTATAC 16275 || ||| ||||||| || || ||||| || | |||| |||||||| || | ||| Sbjct 142 TACTGCAATCAGCCTGTCGCCAAATGGT----GC-CTGGCGGTACTGAGCCGCGATTTAC 88 Query 16276 CTGTAACGT 16284 ||||||||| Sbjct 87 CTGTAACGT 79 >seq43257 Length=1618 Score = 118 bits (130), Expect = 3e-22 Identities = 279/416 (67%), Gaps = 4/416 (1%) Strand=Plus/Minus Query 41764 AATGGCTATGTCTCTAAAGCTGAAGAATAAATTGAGCGCAGCGGTCGTTGGTTTGATTCT 41823 |||||| ||||| | | ||| || || | ||||||| || | || | |||| Sbjct 1139 AATGGCGATGTCACCCAGGCTTAAAAAGACCCTGAGCGCGGCAATGGTGGCCCTGATAGC 1080 Query 41824 TGCCGGGGCTTCCGCACCCGTGATTCTCGATCAGTTTCTGGATGAGAAAGAGGGTAACAG 41883 || || || | || ||||| | | |||||||||| | | ||||||||||| | | Sbjct 1079 TGGTGGCGCCACTGCCCCCGTTCTGATGGATCAGTTTCAGCAGGAGAAAGAGGGCGGCCG 1020 Query 41884 CTTGACAGCATATCGCGACGGCGGCGGACTCTGGACCATTTGCCGTGGTGCAACAATGGT 41943 || | ||||| |||| |||||| ||||||| || ||| | || | ||| || Sbjct 1019 TTTAATTGCATACGCCGACAACGGCGGCATCTGGACGATATGCGGCGGCGTGACACGCGT 960 Query 41944 TGATGGCAAGCCAGTAGTACAGGGCATGAAGCTGTCAGCTGAGAAATGC-GCCC-AGGTA 42001 |||||||||| || || |||| ||| ||| | ||||| | ||| || | | | Sbjct 959 AAATGGCAAGCCGGTTATAAAGGGAATGCGCCTGACCGCTGACCAGTGCCGCGCTATCGA 900 Query 42002 AACGCCATTGAACGCGACAAGGCGCTGGCGTGGGTTGACCGAAATATCAAAGTACCACTG 42061 | | || |||| | || || | || ||||| || ||| | | || |||||| Sbjct 899 CAGGGCAG-GAACAGGCTAAAGCATTAGCCTGGGTAGATA-AAACGTACACGTTCCACTG 842 Query 42062 ACCGAACCACAGAAAGCGGGTATCGCTTCTTTCTGCCCATATAACATCGGCCCCGGAAAA 42121 |||||||| ||||| | || || || || ||||| || | ||||| |||||||| ||| Sbjct 841 ACCGAACCGCAGAAGGTTGGCATAGCGTCATTCTGTCCGTGGAACATTGGCCCCGGTAAA 782 Query 42122 TGCTTCCCATCGACCTTCTATAAGCGCATCAACGCAGGTGACCGCATCGGTGCATG 42177 ||| | ||||| || ||||| | | |||||||| || ||| | |||||||| Sbjct 781 TGCCTGCCATCAACGTTCTACCGGAAACTAAACGCAGGCGATCGCCTGGGTGCATG 726 >seq57448 Length=845 Score = 116 bits (128), Expect = 1e-21 Identities = 306/459 (67%), Gaps = 15/459 (3%) Strand=Plus/Plus Query 15908 GAGGTTATTGACGCCAAACTGCGTTATCCAAATACCGCGCTGCTGTACATCGAATTCGAC 15967 ||||| || ||| ||| ||||| ||||| |||||||||||||| || || || | ||| Sbjct 243 GAGGTGATAGACAGCAAGCTGCGCTATCCGAATACCGCGCTGCTCTATATTGAGGTAGAC 302 Query 15968 TCAAGCCAGTTTAACGGCTCTATC-CCGCAAATATCCTGCGAACCGCGAGGGCGTGTAAT 16026 | || |||||||| || || | || |||| ||||| |||| ||| | | Sbjct 303 GCCAGTCAGTTTAATGG-TCAGGCACCTAAAATTACCTGCAAACCAAAAGGTAAGCTGGT 361 Query 16027 CCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTACAGCGGCACATGGACAGGG-G 16085 ||||| || || |||||||||| | |||| ||| | ||| ||||| ||||| | Sbjct 362 GCGCGTGCCTACGACCTATGACCCGGTAAGTCGCAGCTATAACGGTTCATGG-CAGGGTG 420 Query 16086 CGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAGCG 16145 || || | || | || | || || || |||||||||||||||||||| || | Sbjct 421 ATTTCAAATACGCCTATACCAACAA-CCCGCATGGATTTTTTACGATCTGGTTCTGGACA 479 Query 16146 ACCGCTTTGGGCTGGGCAATCGCCTGACG--GCGGCCAATATTGATAAATGGACGCTTTA 16203 | | ||| |||| | | | || || || ||| |||||||| ||| || || Sbjct 480 AGATTTATGGTATGGG--AACCCGTGTCGATGCATCCATGATTGATAAGTGGGAACTATA 537 Query 16204 TCAGGTCGCGCAATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGGTAGCGGCACTGA 16263 | || || ||||| |||||||| || || |||| ||||||| || || Sbjct 538 CGCCATTGCCCAGTATTGTGATCAGCCCGTGCCGAATGGCGCAGGCGGT------ACCGA 591 Query 16264 GCCTCGCTATACCTGTAACGTGTACGTGCAGGAGAGGAATGACGCCTATACCGTGTTACG 16323 ||| || | |||||| ||||| | | | ||| | | | |||||||| ||||| | Sbjct 592 GCCACGATTTACCTGCAACGTTTTCATTCAGAACCAGCAGGACGCCTACACCGTTCTCAA 651 Query 16324 TGATTTTGCGGCGATATTCCGGGGCATGACGTACTGGGG 16362 || |||| || || ||||| || || || | |||||| Sbjct 652 GGACATTGCCGCCATCTTCCGTGGAATTACTTTCTGGGG 690 >seq46473 Length=412 Score = 113 bits (124), Expect = 1e-20 Identities = 235/338 (70%), Gaps = 14/338 (4%) Strand=Plus/Minus Query 15924 AACTGCGTTATCCA-AATACCGC-GCTGCTGTACATCGAATTCGACTCAAGCCAGTTT-A 15980 ||||||| || || |||||||| |||||| || || ||| | ||||| |||||||| | Sbjct 336 AACTGCGCTAGCCCTAATACCGCAGCTGCTTTATATTGAAGTGGACTCCAGCCAGTTCGA 277 Query 15981 ACGGCTCTATCCCGCAAATATCCTGCGAACCGCGAGGGCGTGTAATCCGCGTTCCGGATA 16040 |||| | ||| || | ||||| | || ||| | | ||||| || || Sbjct 276 ACGGG-CAGGCCCCAAAGTCACCTGCAAGCCAAAAGGCAAACTGGTACGCGTCCCAACTA 218 Query 16041 CGTATGACCCGGAGACCCGCACCTACAGCGGCACATGGACAGGGGCGTTTAAGTGGGCGT 16100 | |||||||| | | ||||| ||| | |||||||||| |||| | ||||||| || | Sbjct 217 CCTATGACCCCGTCAGCCGCAGCTATAACGGCACATGGTCAGGTGATTTTAAGTACGCCT 158 Query 16101 GGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAGCGACCG--CTTTGGGCT 16158 || | ||||| || ||| | |||||||||||||| || ||| | || ||| Sbjct 157 ACACCAACAATCCGGCATGGGTCTTTTACGATCTGGTTCTG---GACAGAATTTATGGCA 101 Query 16159 GGGCAATCGCCTGACG--GCGGCCAATATTGATAAATGGACGCTTTATCAG-GTCGCGCA 16215 || || ||| || | || ||| ||||| || ||| ||| || ||| ||||||| Sbjct 100 TGGGAA-CGCGTGTTGATGCTTCCATGATTGACAAGTGGGAGCTGTA-CAGCATCGCGCA 43 Query 16216 ATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGGTA 16253 ||| ||||||||||| || || |||||| ||||||| Sbjct 42 ATACTGCGATCAGCCTGTGCCAGATGGTGCTGGCGGTA 5 >seq58927 Length=254 Score = 93.3 bits (102), Expect = 1e-14 Identities = 118/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 26527 GATGCCTCGATGATGGCGATCCAGTGGTAGTTCTCGTCTTTGTTGACGAAAATCCAGAAG 26586 || ||||| || | || | |||||||||| ||||||||||||||| ||||| ||| Sbjct 75 GACGCCTCAATAACCGCTACCCAGTGGTAGCCAGGGTCTTTGTTGACGAAGATCCAAAAG 134 Query 26587 AACTGATCCAGCGCTGCGGTTTCGCAGTACATAGCCGCGCTCAGGTGATAATCACGTTCA 26646 |||||||| | | || ||| | ||||| |||||||| ||||| ||||| |||| Sbjct 135 AACTGATCGAAGCCAGCAACCTCGGAATACATCGCCGCGCTGAGGTGGTAATCGCGTT-T 193 Query 26647 ATAATTTCCCGGTGTAGCCTGGCGCGCAGGCTTTCCTGCTT 26687 | ||||| ||||| || | ||||| | | |||||||| Sbjct 194 GTGATTTCACGGTGCAGGCGTGCGCGTAAGTAGTCCTGCTT 234 >seq37294 Length=1674 Score = 87.8 bits (96), Expect = 5e-13 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 27511 ATGGTTTTCTCTACGTGGCGCGCATTGAAGTACATCAGCGAAACGCGCGCATCTTTCACC 27570 |||||||| || |||||||| | | ||| |||||||| | || |||||||| ||| Sbjct 83 ATGGTTTTTTCAACGTGGCGGCCGTGGAAATACATCAGGCTGATCCGGGCATCTTTAACC 142 Query 27571 TGGGTTGAGCTGATGCCGTTGGCGGCGTGGTAAACCTCGTTTGGCAGCCCTTCATAGCGG 27630 | | |||||| ||| ||||||||||||| |||||||||| | |||||| ||| Sbjct 143 ATGCTGCTGCTGATACCGCTGGCGGCGTGGTATGCCTCGTTTGGAATATTTTCATAACGG 202 Query 27631 CCTGGCTCGAA 27641 || ||||| || Sbjct 203 CCAGGCTCAAA 213 >seq93648 Length=577 Score = 80.6 bits (88), Expect = 8e-11 Identities = 159/233 (68%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 15906 CAGAGGTTATTGACGCCAAACTGCGTTATCCAAATACCGCGCTGCTGTACATCGAATTCG 15965 ||||||| || ||| |||||| || ||||| || ||||| | || || |||||| | Sbjct 253 CAGAGGTCATCGACAGCAAACTTCGCTATCCCAACACCGCCTTACTCTATATCGAAGCCA 194 Query 15966 ACTCAAGCCAGTTTAACGGCTCTATC-CCGCAAATATCCTGCGAACCGCGAGGGCGTGTA 16024 || | ||||| ||||| || | ||| |||| |||| | || ||| | Sbjct 193 ACGCGCAGCAGTTCAACGG-TCAGGCTCCGAAAATCACCTGTAAGCCTAAAGGCAAGCTG 135 Query 16025 ATCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTACAGCGGCACATGGACAGGG 16084 | |||||||| ||||||||||||| | |||||| |||||||| | ||| | || Sbjct 134 GTGCGCGTTCCTACCACGTATGACCCGGTAAGCCGCACTTACAGCGGTAGCTGGTCCGGC 75 Query 16085 GCGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGT 16137 | || || | || | || | ||||| || ||| | |||||||||||||| Sbjct 74 GATTTCAAATACGCCTACACCAACAATCCGGCATGGGTCTTTTACGATCTGGT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141658869778200