Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq84058 416 7e-112 seq93587 370 3e-98 seq57448 149 2e-31 seq56734 123 6e-24 seq83242 104 6e-18 seq39396 104 6e-18 seq48546 84.2 5e-12 >seq84058 Length=491 Score = 416 bits (460), Expect = 7e-112 Identities = 391/493 (79%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 4646 TGCTGAACGGCGACGGTACCGGGGAT-AACCTGGAAGGGCTGAACAAAGTGGCAACCGCC 4704 |||||||||| ||||| | || || ||||| ||||| || ||| ||||| || | Sbjct 490 TGCTGAACGGAGACGGCAAAGGCGACGAACCTTGAAGGTCT-AACGCGGTGGCCACACCG 432 Query 4705 TATGACACCTCGCTGAATGCCACCGGCGACACCCGCGCTGACATTATCGCTCACGCTATT 4764 |||||| | || ||||||||| |||| || || || |||||||| || ||||| || || Sbjct 431 TATGACGCTTCTCTGAATGCCTCCGGGGATACGCGTGCTGACATCATTGCTCATGCGATC 372 Query 4765 TATCAGGTGACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTCCTGAACCCGCGCGACTGG 4824 || ||||| || |||||||| |||||||| |||||||| |||| || || ||||||||| Sbjct 371 TACCAGGTCACTGAGTCTGAATTCAGCGCGTCCGGTATTATCCTTAATCCTCGCGACTGG 312 Query 4825 CACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATCTTCGGTGGTCCTCAGGCA 4884 |||| |||||| |||| |||||| ||| || || |||||||| || ||||| ||||| Sbjct 311 CACAGCATCGCACTGCTTAAAGACCGTGATGGTCGTTATATCTTTGGCGGTCCGCAGGCG 252 Query 4885 TTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACTAAGGCGCAGGCCGCCGGC 4944 |||||||| |||| |||||||||| |||| || || || || | |||||| |||| Sbjct 251 TTCACCAGCAACAACATGTGGGGCCTGCCTGTTGTGCCTACGCGTTCACAGGCCAGCGGC 192 Query 4945 ACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGGGATCGCATGGATGCCACC 5004 || ||||| || || ||||| || |||||||| ||||||||||| ||||||||||| || Sbjct 191 ACATTTACTGTTGGTGGTTTTGACATGGCCTCTCAGGTCTGGGACCGCATGGATGCAACG 132 Query 5005 GTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAACATGCTGACCATCCTGTGC 5064 || || || ||||| |||||||| || ||||| || ||||| |||||||| |||||||| Sbjct 131 GTTGAGGTCAGCCGCGAAGACCGGGACAACTTTGTCAAAAA-ATGCTGACAATCCTGTGT 73 Query 5065 GAAGAGCGTCTGGCGCTGGCGCATTATCGCCCGACAGCAATCATCAAGGGCACCTTCTCT 5124 || |||||||| || ||||| || |||||||| |||||||||||||| ||| | || || Sbjct 72 GAGGAGCGTCTTGCTCTGGCTCACTATCGCCCTACAGCAATCATCAA-GGCTCTTTTGCT 14 Query 5125 TCTGGCTCATGAT 5137 || ||||| |||| Sbjct 13 TCAGGCTCCTGAT 1 >seq93587 Length=445 Score = 370 bits (410), Expect = 3e-98 Identities = 341/430 (79%), Gaps = 1/430 (0%) Strand=Plus/Minus Query 1831 GTGAATGCGGTGGTGGTGAAAGATGCTGCTGGCAACCGCAAGCTCGATAAATCCAAAGCA 1890 || ||||| ||| | || ||||| || || |||||| | ||||| || |||||||||||| Sbjct 445 GTTAATGCCGTGATCGTCAAAGACGCAGCGGGCAACAGAAAGCTGGACAAATCCAAAGCA 386 Query 1891 ACGGGCCGTATTGATGGCATGGTCGCAATGACAATGTCCGTTGGTGCTGCTAATGGGGAA 1950 || ||||| ||||| || |||||||||||||| ||||| |||| || ||||| ||||| Sbjct 385 ACAGGCCGCATTGACGGTATGGTCGCAATGACCATGTCTATTGGCGCGGCTAACGGGGAG 326 Query 1951 GTTACCGAACAGGGTGGTGACTTCGACGACTTCATTTTCCGACCGCTGAGCATGTGATGG 2010 || || |||||||||||||| || |||||||||||| |||||||||||||||||||| Sbjct 325 GTCACTTTGCAGGGTGGTGACTTTGAAGACTTCATTTTCAGACCGCTGAGCATGTGATGG 266 Query 2011 AAGAACCTAAATACACGATTGACCTGCGAACCAATAACGGCTGGTGGGCAAGGCTGCAGT 2070 ||||||| |||| || ||||| || || ||||||||||| |||||||| ||| |||| Sbjct 265 AAGAACC-GAATATACAATTGATCTACGGACCAATAACGGTCTGTGGGCAAAGCTTCAGT 207 Query 2071 CCTGGTTTGTCGGCGGGCGTTTAGTCACCCCAAATCAGGGCTCACAGACGGGGCCTGTTT 2130 | ||||| ||||||||||| ||||| || || ||||||||||| ||| | || || || | Sbjct 206 CATGGTTCGTCGGCGGGCGCTTAGTTACGCCTAATCAGGGCTCGCAGTCCGGTCCGGTGT 147 Query 2131 CGGCCCACGGACACCTGGGCGATTCATCCATTAACGATGAACGGATACTGCAAATTTCGA 2190 | || ||| ||||| ||||| || | | ||||| ||||| || | || || |||| Sbjct 146 CTGCATCCGGGCACCTTGGCGACTCCGCAGTCAACGACGAACGAATTTTACAGATATCGA 87 Query 2191 CTGTGTGGCGCTGCGTGAGCCTGATTTCAACGCTCACGGCATGCTTACCGCTTGATGTCT 2250 | || ||||| || ||||| |||||||||||||| || |||| | || |||||||| | Sbjct 86 CGGTCTGGCGTTGTGTGAGTCTGATTTCAACGCTGACATCATGTCTGCCACTTGATGTGT 27 Query 2251 TCGAAACAGA 2260 |||| || || Sbjct 26 TCGAGACGGA 17 >seq57448 Length=845 Score = 149 bits (164), Expect = 2e-31 Identities = 309/458 (67%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 14363 GAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 14422 |||||||| || ||| |||||||| ||||| |||||||||||||| | || | ||| Sbjct 243 GAGGTGATAGACAGCAAGCTGCGCTATCCGAATACCGCGCTGCTCTATATTGAGGTAGAC 302 Query 14423 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 14482 | || ||||| || || ||| ||||| | ||| |||| || | | Sbjct 303 GCCAGTCAGTTTAATGGTCAGGCACCTAAAATTACCTGCAAACCAAAAGGTAAGCTGGTG 362 Query 14483 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 14542 ||||| || ||||| ||||| | || |||| |||| |||| ||||| |||| Sbjct 363 CGCGTGCCTACGACCTATGACCCGGTAAGTCGCAGCTATAACGGTTCATGGCAGGGTGAT 422 Query 14543 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 14602 || || | || | || | ||||| || |||||||||||||| |||||| | ||| Sbjct 423 TTCAAATACGCCTATACCAACAACCC-GCATGGATTTTTTACGATCTGGTTCTG---GAC 478 Query 14603 CGGTTT---GGCCTCGGGCACCGTTTGACCGCTGCGAATATTGATAAATGGACTCTTTAT 14659 | || || | || |||| | || | | |||||||| ||| || || Sbjct 479 AAGATTTATGGTATGGGAACCCGTGTCGATGCATCCATGATTGATAAGTGGGAACTATAC 538 Query 14660 CAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAA 14719 |||| ||||||||||||||| || || | ||| ||| |||||| || Sbjct 539 GCCATTGCCCAGTATTGTGATCAGCCCGTGCCGAATGGCGCAGG------CGGTACCGAG 592 Query 14720 CCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGT 14779 ||||| | |||||||||||| | ||||||| ||| | | ||||||||||| || || Sbjct 593 CCACGATTTACCTGCAACGTTTTCATTCAGAACCAGCAGGACGCCTACACCGTTCTCAAG 652 Query 14780 GATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGG 14817 || ||||||| ||||||||||| || || | |||||| Sbjct 653 GACATTGCCGCCATCTTCCGTGGAATTACTTTCTGGGG 690 >seq56734 Length=385 Score = 123 bits (136), Expect = 6e-24 Identities = 165/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 20112 TCCTC-TTGTGCCGTATTTGTGCCATTGCGACTTATAATCGCATCGATTTTGCTCGCGTG 20170 ||||| ||||| |||||||||| | ||| || | || | || || |||| ||| || Sbjct 320 TCCTCCTTGTGTCGTATTTGTGTCGTTGTCACCCAAAAGAGAGTCAATCTTGCGCGCATG 261 Query 20171 CTCGGTGAGATGCCCGGCTGAAAGGTGGGCGTATCTTTGAACCATTTCGAGAGTTTCCCA 20230 ||||| || || | || ||||| || || || | |||||||||| ||||||| Sbjct 260 TTCGGTCAGGTGGTTAGGTGCCAGGTGTGCATACCTGCGTACCATTTCGATGCTTTCCCA 201 Query 20231 TCCTCCCATCTCTTTAAGTGCAAGAAGAGAGACACCGGACTGAACCAGCCAGCTTGCCCA 20290 ||||||||| || | | ||| ||| | || || | ||||| ||||||||||||||| Sbjct 200 TCCTCCCATTTCCTGCAATGCCGAAAGTGGAACGCCTGCCTGAATCAGCCAGCTTGCCCA 141 Query 20291 AGTATGCCTCAGGTCATGGAAGCGGAAGTTGCTAATGCCTGCCCGCTT 20338 ||||| | | |||||| || ||||| | ||||||||||||||| Sbjct 140 GGTATGACGTAAGTCATGAAAACGGAAATCCTCAATGCCTGCCCGCTT 93 >seq83242 Length=311 Score = 104 bits (114), Expect = 6e-18 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 3713 CTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATG 3772 ||| ||||||||||| ||||||| | || |||||||| || || | | || | | Sbjct 222 CTGAGCGAAATCAGCATCTGCACCATGCCGGCCAACGAGCACGCCACCGTGGCCTCGCTC 163 Query 3773 AAAAGTGTCGATGGCATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAGTC 3832 || || | || ||||| |||| ||||| |||| |||| |||||||| | ||| ||| Sbjct 162 AAGAGCATGGACGGCATCGAAAGCATTCGCGATGCGGAGCACTGGCTGCGAGATGCAGCT 103 Query 3833 GGCCTCACCAAATCACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGATTCGGAGC 3892 |||||| |||| || |||| | | | || ||||| | ||||| || ||||||| Sbjct 102 GGCCTCTCCAAGTCCGAGGCGCAGGCGTTCATCGCCCGCATCAAGTCCGCAGTTCGGAGT 43 Query 3893 GAGTCCGAGGGC 3904 |||||||| ||| Sbjct 42 GAGTCCGAAGGC 31 >seq39396 Length=387 Score = 104 bits (114), Expect = 6e-18 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 20112 TCCTC-TTGTGCCGTATTTGTGCCATTGCGACTTATAATCGCATCGATTTTGCTCGCGTG 20170 ||||| ||||| |||||||||| | || | || || || || ||||||| | | Sbjct 121 TCCTCCTTGTGTCGTATTTGTGTCGTTATCGCCTAAAAGTGCGTCAATTTTGCGTACAAG 180 Query 20171 CTCGGTGAGATGCCCGGCTGAAAGGTGGGCGTATCTTTGAACCATTTCGAGAGTTTCCCA 20230 ||| || || || | || ||||| || || || | |||||| | | | |||||| Sbjct 181 CTCAGTCAGGTGGTTAGGTGCCAGGTGTGCATACCTGCGTACCATT-CTAT-GCTTCCCA 238 Query 20231 TCCTCCCATCTCTTTAAGTGCAAGAAGAGAGACACCGGACTGAACCAGCCAGCTTGCCCA 20290 ||| ||||| || ||| |||| ||| | ||||| | ||||| |||||||||||||| Sbjct 239 TCCGCCCATTCCTGTAA-TGCAGAAAGTGGAACACCTGCCTGAATAAGCCAGCTTGCCCA 297 Query 20291 AGTATGCCTCAGGTCATGGAAGCGGAAGTTGCTAATGCCTGCCCGCTT 20338 ||||||| | |||||| || ||||| | ||||||||||||||| Sbjct 298 GGTATGCCGTAAGTCATGAAAACGGAAATCCTCAATGCCTGCCCGCTT 345 >seq48546 Length=353 Score = 84.2 bits (92), Expect = 5e-12 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 26214 CCTGCTCACGTTGAGCCTGTCTGCGTGCTCTGCGGCGATTTCTGGCGTTATCGTCAGCCA 26273 |||||||||||| ||| |||||| |||||| ||| |||||||||| | |||| Sbjct 250 CCTGCTCACGTTTAGCTGCTCTGCGCGCTCTGTAGCGCGCCTTGGCGTTATCCTTTGCCA 191 Query 26274 GATATGTAATGACTACTGTCATGTTGACCTCCGATGATTGACTTTGGCGGTGACGCGCCG 26333 |||| || |||||||||||||| ||||| | | |||| ||| || ||||| | |||| Sbjct 190 GATAAGTGATGACTACTGTCATAAGTACCTCAGGTAATTGGCTTAGGTGGTGA-GGGCCG 132 Query 26334 G 26334 | Sbjct 131 G 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123715476840600