Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq84058 407 4e-109 seq93587 361 1e-95 seq49947 340 5e-89 seq57448 152 1e-32 seq35061 136 1e-27 seq61963 127 5e-25 seq83242 104 6e-18 seq52587 82.4 2e-11 >seq84058 Length=491 Score = 407 bits (450), Expect = 4e-109 Identities = 374/469 (80%), Gaps = 3/469 (1%) Strand=Plus/Minus Query 4646 TGCTGAACGGCGACGGTACCGGGGAT-AACCTGGAAGGGCTGAACAAAGTGGCAACCGCC 4704 |||||||||| ||||| | || || ||||| ||||| || ||| ||||| || | Sbjct 490 TGCTGAACGGAGACGGCAAAGGCGACGAACCTTGAAGGTCT-AACGCGGTGGCCACACCG 432 Query 4705 TATGACACCTCGCTGAATGCCACCGGCGACACCCGCGCTGACATTATCGCTCACGCTATT 4764 |||||| | || ||||||||| |||| || || || |||||||| || ||||| || || Sbjct 431 TATGACGCTTCTCTGAATGCCTCCGGGGATACGCGTGCTGACATCATTGCTCATGCGATC 372 Query 4765 TATCAGGTGACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTCCTGAACCCGCGCGACTGG 4824 || ||||| || |||||||| |||||||| |||||||| |||| || || ||||||||| Sbjct 371 TACCAGGTCACTGAGTCTGAATTCAGCGCGTCCGGTATTATCCTTAATCCTCGCGACTGG 312 Query 4825 CACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATCTTCGGTGGTCCTCAGGCA 4884 |||| |||||| |||| |||||| ||| || || |||||||| || ||||| ||||| Sbjct 311 CACAGCATCGCACTGCTTAAAGACCGTGATGGTCGTTATATCTTTGGCGGTCCGCAGGCG 252 Query 4885 TTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACTAAGGCGCAGGCCGTCGGC 4944 |||||||| |||| |||||||||| |||| || || || || | |||||| |||| Sbjct 251 TTCACCAGCAACAACATGTGGGGCCTGCCTGTTGTGCCTACGCGTTCACAGGCCAGCGGC 192 Query 4945 ACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGGGATCGCATGGATGCCACC 5004 || ||||| || || ||||| || |||||||| ||||||||||| ||||||||||| || Sbjct 191 ACATTTACTGTTGGTGGTTTTGACATGGCCTCTCAGGTCTGGGACCGCATGGATGCAACG 132 Query 5005 GTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAACATGCTGACCATCCTGTGC 5064 || || || ||||| |||||||| || ||||| || ||||| |||||||| |||||||| Sbjct 131 GTTGAGGTCAGCCGCGAAGACCGGGACAACTTTGTCAAAAA-ATGCTGACAATCCTGTGT 73 Query 5065 GAAGAGCGTCTGGCGCTGGCGCATTATCGCCCGACAGCAATCATCAAGG 5113 || |||||||| || ||||| || |||||||| |||||||||||||||| Sbjct 72 GAGGAGCGTCTTGCTCTGGCTCACTATCGCCCTACAGCAATCATCAAGG 24 >seq93587 Length=445 Score = 361 bits (400), Expect = 1e-95 Identities = 339/430 (79%), Gaps = 1/430 (0%) Strand=Plus/Minus Query 1831 GTGAATGCGGTGGTGGTGAAAGATGCTGCTGGCAACCGCAAGCTCGATAAATCCAAAGCA 1890 || ||||| ||| | || ||||| || || |||||| | ||||| || |||||||||||| Sbjct 445 GTTAATGCCGTGATCGTCAAAGACGCAGCGGGCAACAGAAAGCTGGACAAATCCAAAGCA 386 Query 1891 ACGGGCCGTATTGATGGCATGGTCGCAATGACAATGTCCGTTGGTGCTGCTAATGGGGAA 1950 || ||||| ||||| || |||||||||||||| ||||| |||| || ||||| ||||| Sbjct 385 ACAGGCCGCATTGACGGTATGGTCGCAATGACCATGTCTATTGGCGCGGCTAACGGGGAG 326 Query 1951 GTTACCGAACAGGGTGGTGACTTCGACGACTTCATTTTCCGACCGCTGAGCATGTGATGG 2010 || || |||||||||||||| || |||||||||||| |||||||||||||||||||| Sbjct 325 GTCACTTTGCAGGGTGGTGACTTTGAAGACTTCATTTTCAGACCGCTGAGCATGTGATGG 266 Query 2011 AAGAACCTAAATACACGATTGACCTGCGAACCAATAACGGCTGGTGGGCAAGGCTGAAGT 2070 ||||||| |||| || ||||| || || ||||||||||| |||||||| ||| ||| Sbjct 265 AAGAACC-GAATATACAATTGATCTACGGACCAATAACGGTCTGTGGGCAAAGCTTCAGT 207 Query 2071 CCTGGTTTGTCGGCGGGCGTTTAGTCACCCCAAATCAGGGCTCACAGACGGGGCCTGTTT 2130 | ||||| ||||||||||| ||||| || || ||||||||||| ||| | || || || | Sbjct 206 CATGGTTCGTCGGCGGGCGCTTAGTTACGCCTAATCAGGGCTCGCAGTCCGGTCCGGTGT 147 Query 2131 CGGCCCACGGATACCTGGGCGATTCATCCATTAACGATGAACGGATACTGCAAATTTCGA 2190 | || ||| |||| ||||| || | | ||||| ||||| || | || || |||| Sbjct 146 CTGCATCCGGGCACCTTGGCGACTCCGCAGTCAACGACGAACGAATTTTACAGATATCGA 87 Query 2191 CTGTGTGGCGCTGCGTGAGCCTGATTTCAACGCTCACGGCATGCTTACCGCTTGATGTCT 2250 | || ||||| || ||||| |||||||||||||| || |||| | || |||||||| | Sbjct 86 CGGTCTGGCGTTGTGTGAGTCTGATTTCAACGCTGACATCATGTCTGCCACTTGATGTGT 27 Query 2251 TCGAAACAGA 2260 |||| || || Sbjct 26 TCGAGACGGA 17 >seq49947 Length=2956 Score = 340 bits (376), Expect = 5e-89 Identities = 288/348 (83%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 32003 GGAGCGAAGAGTGG-CTGATATCGATGATGGTTACACCAGATTCGCTAACGAGCTGCTGG 32061 |||||| | |||| | |||| |||| ||||||| |||||| ||||||||||||| |||| Sbjct 1266 GGAGCGCCGTGTGGTCGGATACCGATAATGGTTATACCAGAATCGCTAACGAGCTACTGG 1207 Query 32062 AAGCTATCGCAAGTGCCGATTTAACCGCTCGCCAGTTGAAAGTTATGCTGGCCTACGTCC 32121 ||||||||||||||||||||||||| ||| | ||||||||| | |||||||| ||||||| Sbjct 1206 AAGCTATCGCAAGTGCCGATTTAACAGCTAGGCAGTTGAAACTGATGCTGGCATACGTCC 1147 Query 32122 GGAAAACATATGGATTCAATAAGAAAACAGATCGAATAGCCGATGAGCAAATTTCTCAGT 32181 | ||||||| || || || |||||| ||||||| || || || ||||| ||| | || Sbjct 1146 -GCAAACATACGG-TTTAACAAGAAATCAGATCGCATTGCTGACGAGCAGATTGCCCAAC 1089 Query 32182 TAACAGGACTGTCAAGGCAGAATGTTAACAAGGCTAAAAAAGAACTGATTTCAATGAATT 32241 | || || || ||| | ||||| || |||||||| |||||||||||| |||||||||||| Sbjct 1088 TCACCGGGCTTTCACGCCAGAACGTCAACAAGGC-AAAAAAGAACTGCTTTCAATGAATT 1030 Query 32242 GCCTGTTTATGGATGGAAATCAAATCGGTGTAAACAGGGAGGTATCTGCGTGGCAATTCA 32301 ||||||| ||| | |||| |||||||| | |||| ||||| || ||||||||||||| Sbjct 1029 GCCTGTTAATGCAAGGAAGCCAAATCGGGATTAACAAAGAGGT-TCAGCGTGGCAATTCA 971 Query 32302 GCAAGTGTCTCCAAGTTAGCAACTTTGTCTCGAAGTTAGAGACAAAAA 32349 |||||||||||||||||||||| || ||||| || ||||||||||| Sbjct 970 GCAAGTGTCTCCAAGTTAGCAATTTAGTCTCTAAACCAGAGACAAAAA 923 >seq57448 Length=845 Score = 152 bits (168), Expect = 1e-32 Identities = 311/458 (68%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 15082 GAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 15141 |||||||| ||| ||| |||||||| ||||| |||||||||||||| | || | ||| Sbjct 243 GAGGTGATAGACAGCAAGCTGCGCTATCCGAATACCGCGCTGCTCTATATTGAGGTAGAC 302 Query 15142 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 15201 | || ||||| || || ||| ||||| | ||| |||| || | | Sbjct 303 GCCAGTCAGTTTAATGGTCAGGCACCTAAAATTACCTGCAAACCAAAAGGTAAGCTGGTG 362 Query 15202 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 15261 ||||| || ||||| ||||| | || |||| |||| |||| ||||| |||| Sbjct 363 CGCGTGCCTACGACCTATGACCCGGTAAGTCGCAGCTATAACGGTTCATGGCAGGGTGAT 422 Query 15262 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 15321 || || | || | || | ||||| || |||||||||||||| |||||| | ||| Sbjct 423 TTCAAATACGCCTATACCAACAACCC-GCATGGATTTTTTACGATCTGGTTCTG---GAC 478 Query 15322 CGG--TTCGGCCTTGGGCACC-GTTTGACCGCTGCGAATATTGATAAATGGACGCTTTAT 15378 | || | |||| ||| || | || | | |||||||| ||| || || Sbjct 479 AAGATTTATGGTATGGGAACCCGTGTCGATGCATCCATGATTGATAAGTGGGAACTATAC 538 Query 15379 CAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAA 15438 |||| ||||||||||||||| || || | ||| ||| |||||| || Sbjct 539 GCCATTGCCCAGTATTGTGATCAGCCCGTGCCGAATGGCGCAGG------CGGTACCGAG 592 Query 15439 CCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGT 15498 ||||| | |||||||||||| | ||||||| ||| | | ||||||||||| || || Sbjct 593 CCACGATTTACCTGCAACGTTTTCATTCAGAACCAGCAGGACGCCTACACCGTTCTCAAG 652 Query 15499 GATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGG 15536 || ||||||| ||||||||||| || || | |||||| Sbjct 653 GACATTGCCGCCATCTTCCGTGGAATTACTTTCTGGGG 690 >seq35061 Length=1748 Score = 136 bits (150), Expect = 1e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 40426 CGTAAAAATCCCAGACCAGCCTGACGAGCTGGAGCTGCTGACATTCTGCGTTCTGGTGCT 40485 |||||||||||| || ||| || | | || |||| ||||| || ||||| || Sbjct 1708 CGTAAAAATCCCCGAGTGGCCGGATTCATTAAATCTATTGACCTTCTGTGTACTGGTTCT 1649 Query 40486 GAAGAATGGCTTTACGGTCACCGGGGAAAGCGCCTGCGCCAGCCCAGAGAACTTCGATGA 40545 |||||| || || || |||||||| |||||||||||||||||||| || ||||| || | Sbjct 1648 GAAGAACGGATTCACCGTCACCGGTGAAAGCGCCTGCGCCAGCCCGGAAAACTTTGACGC 1589 Query 40546 AGAAATCGGGCGCAAGATTGCTCGCCAGAATGCTGTAAACAAAATCTGGATGCTCGAAGG 40605 |||||| || || | || || || ||||| || | ||||||||| || ||||| Sbjct 1588 AGAAATAGGTCGTAGCATCGCCCGTGCCAATGCCGTTAGTAAAATCTGGCAACTTGAAGG 1529 Query 40606 TTACTTGCTGAAGCAGAAGCTAAGCGAA 40633 ||| |||||||||| || || |||||| Sbjct 1528 CTACCTGCTGAAGCAAAAACTTAGCGAA 1501 >seq61963 Length=477 Score = 127 bits (140), Expect = 5e-25 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33453 ATCCTGACTTGTTAATAATCGATGAGGTT-GGCGTGCAGTTCGGCAGTGATGCTGAAAAG 33511 |||||||| || | || |||||||| || ||||| ||||| || ||||| ||||||| | Sbjct 419 ATCCTGACCTGCTGATTATCGATGAAGTCCGGCGTCCAGTTTGGTAGTGAAGCTGAAA-G 361 Query 33512 CTAATCATGTTCGAAATTATCAACACCAGATATGAATACATGAAGCCAACAATCCTGATT 33571 || ||| |||| ||| | || |||||| | || || | ||||||||||| || ||||| Sbjct 360 CTGATCCTGTTTGAAGTGATTAACACCCGCTACGAGCAGATGAAGCCAACCATTCTGATC 301 Query 33572 AGTAATCAGAGCAAAGATGAACTGTCTGCATTCATTGGTGAGCGTGTTATTGACAGGATG 33631 || || | | || || | | || |||||||| ||||| || |||||| | ||| Sbjct 300 AGCAACCTTCCCCTCGAAGAGTTAACGGCCTTCATTGGCGAGCGCGTCATTGACCGCATG 241 Query 33632 AATGATGGCGGCGGGTGCACTCTTGCGTTTACATGGGAT 33670 | || |||||||| || || || || || || |||||| Sbjct 240 AGCGACGGCGGCGGCTGTACACTCGCTTTCACCTGGGAT 202 >seq83242 Length=311 Score = 104 bits (114), Expect = 6e-18 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 3713 CTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATG 3772 ||| ||||||||||| ||||||| | || |||||||| || || | | || | | Sbjct 222 CTGAGCGAAATCAGCATCTGCACCATGCCGGCCAACGAGCACGCCACCGTGGCCTCGCTC 163 Query 3773 AAAAGTGTCGATGGCATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAGTC 3832 || || | || ||||| |||| ||||| |||| |||| |||||||| | ||| ||| Sbjct 162 AAGAGCATGGACGGCATCGAAAGCATTCGCGATGCGGAGCACTGGCTGCGAGATGCAGCT 103 Query 3833 GGCCTCACCAAATCACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGATTCGGAGC 3892 |||||| |||| || |||| | | | || ||||| | ||||| || ||||||| Sbjct 102 GGCCTCTCCAAGTCCGAGGCGCAGGCGTTCATCGCCCGCATCAAGTCCGCAGTTCGGAGT 43 Query 3893 GAGTCCGAGGGC 3904 |||||||| ||| Sbjct 42 GAGTCCGAAGGC 31 >seq52587 Length=1677 Score = 82.4 bits (90), Expect = 2e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 15074 GCTTCACCGAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCG 15133 || ||||||| ||||| |||||||| |||||||| || ||||| |||||||||||||||| Sbjct 1333 GCATCACCGAAGTGATCGACGCCAAGCTGCGCTATCCCAACACGGCGCTGCTCTACGTCG 1392 Query 15134 AATTC 15138 | ||| Sbjct 1393 AGTTC 1397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132687173309400