Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq84058 416 7e-112 seq93587 358 2e-94 seq48793 223 9e-54 seq57448 149 2e-31 seq56092 107 5e-19 seq83242 98.7 3e-16 seq36846 95.1 3e-15 seq52587 82.4 2e-11 >seq84058 Length=491 Score = 416 bits (460), Expect = 7e-112 Identities = 391/493 (79%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 4739 TGCTGAACGGCGACGGTACCGGGGAT-AACCTGGAAGGGCTGAACAAAGTGGCAACCGCC 4797 |||||||||| ||||| | || || ||||| ||||| || ||| ||||| || | Sbjct 490 TGCTGAACGGAGACGGCAAAGGCGACGAACCTTGAAGGTCT-AACGCGGTGGCCACACCG 432 Query 4798 TATGACACCTCGCTGAATGCCACCGGCGACACCCGCGCTGACATTATCGCTCACGCTATT 4857 |||||| | || ||||||||| |||| || || || |||||||| || ||||| || || Sbjct 431 TATGACGCTTCTCTGAATGCCTCCGGGGATACGCGTGCTGACATCATTGCTCATGCGATC 372 Query 4858 TATCAGGTGACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTCCTGAACCCGCGCGACTGG 4917 || ||||| || |||||||| |||||||| |||||||| |||| || || ||||||||| Sbjct 371 TACCAGGTCACTGAGTCTGAATTCAGCGCGTCCGGTATTATCCTTAATCCTCGCGACTGG 312 Query 4918 CACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATCTTCGGTGGTCCTCAGGCA 4977 |||| |||||| |||| |||||| ||| || || |||||||| || ||||| ||||| Sbjct 311 CACAGCATCGCACTGCTTAAAGACCGTGATGGTCGTTATATCTTTGGCGGTCCGCAGGCG 252 Query 4978 TTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACTAAGGCGCAGGCCGCCGGC 5037 |||||||| |||| |||||||||| |||| || || || || | |||||| |||| Sbjct 251 TTCACCAGCAACAACATGTGGGGCCTGCCTGTTGTGCCTACGCGTTCACAGGCCAGCGGC 192 Query 5038 ACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGGGATCGCATGGATGCCACC 5097 || ||||| || || ||||| || |||||||| ||||||||||| ||||||||||| || Sbjct 191 ACATTTACTGTTGGTGGTTTTGACATGGCCTCTCAGGTCTGGGACCGCATGGATGCAACG 132 Query 5098 GTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAACATGCTGACCATCCTGTGC 5157 || || || ||||| |||||||| || ||||| || ||||| |||||||| |||||||| Sbjct 131 GTTGAGGTCAGCCGCGAAGACCGGGACAACTTTGTCAAAAA-ATGCTGACAATCCTGTGT 73 Query 5158 GAAGAGCGTCTGGCGCTGGCGCATTATCGCCCGACAGCAATCATCAAGGGCACCTTCTCT 5217 || |||||||| || ||||| || |||||||| |||||||||||||| ||| | || || Sbjct 72 GAGGAGCGTCTTGCTCTGGCTCACTATCGCCCTACAGCAATCATCAA-GGCTCTTTTGCT 14 Query 5218 TCTGGCTCATGAT 5230 || ||||| |||| Sbjct 13 TCAGGCTCCTGAT 1 >seq93587 Length=445 Score = 358 bits (396), Expect = 2e-94 Identities = 338/430 (79%), Gaps = 1/430 (0%) Strand=Plus/Minus Query 1924 GTGAATGCGGTGGTGGTGAAAGATGCTGCTGGCAACCGCAAGCTCGATAAATCCAAAGCA 1983 || ||||| ||| | || ||||| || || |||||| | ||||| || |||||||||||| Sbjct 445 GTTAATGCCGTGATCGTCAAAGACGCAGCGGGCAACAGAAAGCTGGACAAATCCAAAGCA 386 Query 1984 ACGGGCCGTATTGATGGCATGGTCGCAATGACAATGTCCGTTGGTGCTGCTAATGGGGAA 2043 || ||||| ||||| || |||||||||||||| ||||| |||| || ||||| ||||| Sbjct 385 ACAGGCCGCATTGACGGTATGGTCGCAATGACCATGTCTATTGGCGCGGCTAACGGGGAG 326 Query 2044 GTTACCGAACAGGGTGGTGACTTCGACGATTTCATTTTCCGACCGCTGAGCATGTGATGG 2103 || || |||||||||||||| || || ||||||||| |||||||||||||||||||| Sbjct 325 GTCACTTTGCAGGGTGGTGACTTTGAAGACTTCATTTTCAGACCGCTGAGCATGTGATGG 266 Query 2104 AAGAACCTAAATACACGATTGACCTGCGAACCAATAACGGCTGGTGGGCAAGGCTGAAGT 2163 ||||||| |||| || ||||| || || ||||||||||| |||||||| ||| ||| Sbjct 265 AAGAACC-GAATATACAATTGATCTACGGACCAATAACGGTCTGTGGGCAAAGCTTCAGT 207 Query 2164 CCTGGTTTGTCGGCGGGCGTTTAGTCACCCCAAATCAGGGCTCACAGACGGGGCCTGTTT 2223 | ||||| ||||||||||| ||||| || || ||||||||||| ||| | || || || | Sbjct 206 CATGGTTCGTCGGCGGGCGCTTAGTTACGCCTAATCAGGGCTCGCAGTCCGGTCCGGTGT 147 Query 2224 CGGCCCACGGATACCTGGGCGATTCATCCATTAACGATGAACGGATACTGCAAATTTCGA 2283 | || ||| |||| ||||| || | | ||||| ||||| || | || || |||| Sbjct 146 CTGCATCCGGGCACCTTGGCGACTCCGCAGTCAACGACGAACGAATTTTACAGATATCGA 87 Query 2284 CTGTGTGGCGCTGCGTGAGCCTGATTTCAACGCTCACGGCATGCTTACCGCTTGATGTCT 2343 | || ||||| || ||||| |||||||||||||| || |||| | || |||||||| | Sbjct 86 CGGTCTGGCGTTGTGTGAGTCTGATTTCAACGCTGACATCATGTCTGCCACTTGATGTGT 27 Query 2344 TCGAAACAGA 2353 |||| || || Sbjct 26 TCGAGACGGA 17 >seq48793 Length=1217 Score = 223 bits (246), Expect = 9e-54 Identities = 523/775 (67%), Gaps = 27/775 (3%) Strand=Plus/Minus Query 32676 TTCGTCAGAGAATTCTGG-CGAATCCTCTGAC-CAGCCA--GAAAACGATCTTTCTGTGG 32731 ||||| |||||||||| ||||||| | || || || ||||| ||| || |||| Sbjct 1215 TTCGTTTGAGAATTCTGAACGAATCCCCAAACTCACCCTCTGAAAATGATTTTCCTGT-- 1158 Query 32732 TTAAACCGGATGCTGCAAT----TCAG--AGCGGCAGCAAGTGGGGAACAGCAGAAGACC 32785 ||| || ||||| || || ||| | |||| ||||||||| || | || |||| Sbjct 1157 -TAAGCCAGATGCAGCGATCAGTTCACCCAAAGGCAACAAGTGGGGCTCACCTGACGACC 1099 Query 32786 TGACCGCCGCAGAGTGGATGTTTGACATGGTGAAGACTATCGCACCATCAGCCAGAAAAC 32845 || ||| |||||||| | | | || | | ||| || ||| | || | Sbjct 1098 TGCATTGCGCCGAGTGGATCGCGGGCCTTGTCGCGTCAATCCGTCCGGCAGTGCGCAAGC 1039 Query 32846 CGAATTTTGCTGGGTGGGCTAACGATATCCGCCTGATGCGTGAACGTGACGGACGTAACC 32905 | || | | ||||| || || | ||||||||||||||| ||||| || | | Sbjct 1038 CAAACCTCACAACCTGGGCCAATGACGTTCGCCTGATGCGTGAAATCGACGGGCGCACAC 979 Query 32906 ATCGCGACATGTGTGTACTGTTCCGCTGGGCATGCCAGGACAACTTCTGGTCCGGTAACG 32965 | ||||| || || | | ||||| ||||| ||| || ||||||| | ||| Sbjct 978 ACCGCGAGATCTGCGAATTGTTCAAATGGGCCAGCCGCGATGCGTTCTGGTGCTCAAACA 919 Query 32966 TTCTTAGCCCGGCCAAACTCCGCGACAAGTGGACCCAGCTCGAAATCAACCGTAACAAGC 33025 ||||| ||||||||||| |||| |||||| | |||| || | ||| || || Sbjct 918 TTCTTTCGCCGGCCAAACTGCGCGCTAAGTGGGACACGCTCTGTCTCCAGCGTGAC--GC 861 Query 33026 AACAGGCAGTCGTGACAGCCAGCAAACCAAAACTCGACCTGACAAACACAGACTGGATTT 33085 || | || | | |||| ||| ||| || ||| | ||||| |||||||| Sbjct 860 CAC-GCCACGCAGGGCAGC-AGCG--CCAGCCCTGGACTACAACAACACCGACTGGATCC 805 Query 33086 ACGGGGTGGATCTA-TGAAAAACATCGCCGCACAGATGGTTAACTTTGACCGTGAGCAGA 33144 |||||||| ||| | |||||| ||| || | ||||||||||||| |||||||||| | | Sbjct 804 ACGGGGTG-ATCGAATGAAAAGCATTGCTGAACAGATGGTTAACCTTGACCGTGAAAACA 746 Query 33145 TGCGTCGGATCGCCAACAACATGCCGGAA---CAGTACGACGAAAAGCCGCAGGTACAGC 33201 || || | || ||| || ||||| ||| |||| | | || ||||| | ||| Sbjct 745 TGAAACGTGTTGCTAACGGTCTGGCGGAAATCCAGGACGATGCACCGCAGCAGGCAGAGC 686 Query 33202 AGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAGTTACTGGCAACTTTCCCGGCGAGCC 33261 |||||| | || | || | || | ||||| | || |||||||||| | Sbjct 685 GGGTAGCCGAAATTTTTAATACGCTCTTTGGTCAGTTGCGTGCGGCTTTCCCGGCTGCCA 626 Query 33262 TGGCTAACC---GTGACCAGAACGAACTGAACGAAATCCGCCGCCAGTGGGTTCTGGCTT 33318 |||| || | || |||| | ||||| |||||| |||| ||||||||| || || | | Sbjct 625 TGGCAAATCTGCGTACCCAGGAGGAACTAAACGAATTCCGGCGCCAGTGGCTTTTGTCAT 566 Query 33319 TCCGGGAAAACGGGATCACCACAATGGAACAGGTTAACGCAGGAATGCGCGTAGCCCGTC 33378 |||| || ||||||||||||||||||| ||||| ||||| || ||||| | ||||||| Sbjct 565 TCCGCGAGAACGGGATCACCACAATGGCTCAGGTCAACGCTGGCATGCGGGCAGCCCGTA 506 Query 33379 GGCAGAATCGACCATTTCTGCCATCACCCGGGCAGTTTGTTGCATGGTGCCGGGA 33433 ||| | ||| || ||||| || || || ||||| || || |||||||| || Sbjct 505 AACAGGAAAAACCCTTCCTGCCTTCCCCGGGTCAGTTCGTCGCCTGGTGCCGTGA 451 >seq57448 Length=845 Score = 149 bits (164), Expect = 2e-31 Identities = 310/458 (68%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 14459 GAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 14518 |||||||| ||| ||| |||||||| ||||| |||||||||||||| | || | ||| Sbjct 243 GAGGTGATAGACAGCAAGCTGCGCTATCCGAATACCGCGCTGCTCTATATTGAGGTAGAC 302 Query 14519 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 14578 | || ||||| || || ||| ||||| | ||| |||| || | | Sbjct 303 GCCAGTCAGTTTAATGGTCAGGCACCTAAAATTACCTGCAAACCAAAAGGTAAGCTGGTG 362 Query 14579 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 14638 ||||| || ||||| ||||| | || |||| |||| |||| ||||| |||| Sbjct 363 CGCGTGCCTACGACCTATGACCCGGTAAGTCGCAGCTATAACGGTTCATGGCAGGGTGAT 422 Query 14639 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 14698 || || | || | || | ||||| || |||||||||||||| |||||| | ||| Sbjct 423 TTCAAATACGCCTATACCAACAACCC-GCATGGATTTTTTACGATCTGGTTCTG---GAC 478 Query 14699 CGG--TTCGGCCTTGGGCACC-GTTTGACCGCTGCGAATATTGATAAATGGACGCTTTAT 14755 | || | |||| ||| || | || | | |||||||| ||| || || Sbjct 479 AAGATTTATGGTATGGGAACCCGTGTCGATGCATCCATGATTGATAAGTGGGAACTATAC 538 Query 14756 CAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAATGGTACAGAA 14815 |||| ||||||||||||||| || || | ||| ||| || ||| || Sbjct 539 GCCATTGCCCAGTATTGTGATCAGCCCGTGCCGAATGGCGCAGGCGG------TACCGAG 592 Query 14816 CCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGT 14875 ||||| | |||||||||||| | ||||||| ||| | | ||||||||||| || || Sbjct 593 CCACGATTTACCTGCAACGTTTTCATTCAGAACCAGCAGGACGCCTACACCGTTCTCAAG 652 Query 14876 GATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGG 14913 || ||||||| ||||||||||| || || | |||||| Sbjct 653 GACATTGCCGCCATCTTCCGTGGAATTACTTTCTGGGG 690 >seq56092 Length=894 Score = 107 bits (118), Expect = 5e-19 Identities = 134/180 (74%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 32034 CCAAAGATGGCCATGCTTCTGGCTGTGCTGGAGTGGGGT---GTTGAAGACGAGGAATTA 32090 || ||| | || ||| | || || |||||||||||||| ||||| |||||| | Sbjct 458 CCGAAGTTCGCAATGTTACTTGCAGTGCTGGAGTGGGGAATCGTTGATGACGAGA---TG 402 Query 32091 GCAAAGCTAGCAAAGAAAGTAGCCATGGTGCTGACAAAAGAAAAGCCTCAAGACTGCTGC 32150 || | |||| | | || || ||| | |||||||||||||||||||||| ||| Sbjct 401 GCTCATTTAGCGCGGCAGGTGGCAATGATACTGACAAAAGAAAAGCCTCAAG-TTGCGCG 343 Query 32151 AACAGTTTTGAGGCCTGATGTAGAAAGACTGGATCAATCCACAGGAGTCATTATGACAAA 32210 |||| ||||||| |||||| || |||||||||||| ||||||||| |||||| |||| Sbjct 342 AACAACTTTGAGG-CTGATGCGAAATGACTGGATCAATTCACAGGAGTAATTATGCCAAA 284 >seq83242 Length=311 Score = 98.7 bits (108), Expect = 3e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 3806 CTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATG 3865 ||| ||||||||||| ||||||| | || |||||||| || || | | || | | Sbjct 222 CTGAGCGAAATCAGCATCTGCACCATGCCGGCCAACGAGCACGCCACCGTGGCCTCGCTC 163 Query 3866 AAAAGTGTCGATGGTATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAGTC 3925 || || | || || || |||| ||||| |||| |||| |||||||| | ||| ||| Sbjct 162 AAGAGCATGGACGGCATCGAAAGCATTCGCGATGCGGAGCACTGGCTGCGAGATGCAGCT 103 Query 3926 GGCCTCACCAAATCACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGATTCGGAGC 3985 |||||| |||| || |||| | | | || ||||| | ||||| || ||||||| Sbjct 102 GGCCTCTCCAAGTCCGAGGCGCAGGCGTTCATCGCCCGCATCAAGTCCGCAGTTCGGAGT 43 Query 3986 GAGTCCGAGGGC 3997 |||||||| ||| Sbjct 42 GAGTCCGAAGGC 31 >seq36846 Length=3657 Score = 95.1 bits (104), Expect = 3e-15 Identities = 173/248 (70%), Gaps = 13/248 (5%) Strand=Plus/Minus Query 20116 ACCAGCCACATATCGGACTCTTCAAACATTTCCTCCAGCAT--GCGGTTCAGTT--TTTC 20171 |||||||| | |||| || ||||||||||| |||| || ||| |||| ||| Sbjct 2257 ACCAGCCAAAACTCGGCTTCATCAAACATTTCTTCCACCAGACGCGCGACAGTGGCTTT- 2199 Query 20172 CCGATCACTTTTGCTGGCATCGCTATTTAAACCGTTCGCCTGCATTGGCTTCACCTTCAC 20231 |||| | |||||| ||| | | || |||| | ||| || |||||||| || Sbjct 2198 ---ATCATTCTTGCTGAGGTCGGTTTCTATCGCGTTACGTTCCATCGGTTTCACCTTGAC 2142 Query 20232 TTCGGCATCGGGGAAAATCTGGTGCACCCGCTTCTTCAA-CTCGGCCAGTATGATCTCTC 20290 ||| || || |||| ||||||| ||||| ||||| ||| |||| ||| || || | Sbjct 2141 ATCGATGTCAGGAAAAACACGGTGCACACGCTT-TTCAAGCTCTGCCAATATCATGTCGC 2083 Query 20291 TGGCCCCTTTGAGCCCCTCAACATTACGCTTGTCATAAACTAGTTCAACGAAC---ATAA 20347 |||||| || ||| | ||||||||||| || |||| || || || ||| |||| Sbjct 2082 GCGCCCCTGGCAGGCCCGCGACATTACGCTTATCGTAAATTAACTCTACAAACATAATAA 2023 Query 20348 CCATCCCT 20355 |||||||| Sbjct 2022 CCATCCCT 2015 >seq52587 Length=1677 Score = 82.4 bits (90), Expect = 2e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 14451 GCTTCACCGAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCG 14510 || ||||||| ||||| |||||||| |||||||| || ||||| |||||||||||||||| Sbjct 1333 GCATCACCGAAGTGATCGACGCCAAGCTGCGCTATCCCAACACGGCGCTGCTCTACGTCG 1392 Query 14511 AATTC 14515 | ||| Sbjct 1393 AGTTC 1397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129949016659200