Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq61012 150 5e-32 seq47236 127 6e-25 seq46655 91.5 4e-14 seq46735 87.8 5e-13 seq64133 82.4 2e-11 seq64132 82.4 2e-11 >seq61012 Length=2393 Score = 150 bits (166), Expect = 5e-32 Identities = 271/388 (70%), Gaps = 15/388 (4%) Strand=Plus/Minus Query 32430 AGATCGTTATCAATCTC--ATTGGAGTCAAACATTCCCATTGGGGATTTAACAGTGTCTG 32487 || ||||||||||||| ||||| || || | ||| || ||||||||||| | ||||| Sbjct 1014 AGGTCGTTATCAATCTGGAATTGG--TCGAATAGTCCGATGGGGGATTTAACCGGGTCTG 957 Query 32488 CACCGTTGTTTTTTGTGGTGAAAAAGAACTG---GTCAT-CACGGGTAAGGGTGCGAAGA 32543 |||| | ||||| || | | | ||||| |||| |||||| ||| Sbjct 956 TGCCGTCCGACTGGGTGGTAAAGTAATAGCGACCGTCATACACGCC----GGTGCGCAGA 901 Query 32544 ACTATAGTAAACATGCCTTCGACAGTGATTTTCTCGTCCAGCATTTTGCCGATAGTTTTC 32603 | ||| | ||||| || || ||||||||||| |||||||||||||||||||| || ||| Sbjct 900 GCAATACTGAACATCCCCTCAACAGTGATTTTTTCGTCCAGCATTTTGCCGATGGTCTTC 841 Query 32604 ATTTTCACGCGCCCCATAGGGGTTTCTTCGGTGTGTGCAAGAAAATAGACTCTCAGGTCA 32663 || || | || || || || ||||| ||||| || || ||||| || | || || Sbjct 840 ATCTTGATTCGGCCGGCTGGTGTCTCTTCCGTGTGAGCGAGGAAATAAACAATTAGATCG 781 Query 32664 TCAGGTGCATCCTGTGCAGCCTTAATCACCTCCCAT-GCGTGGCGGCCTATCTCAGTAAA 32722 || || |||| || ||| ||||| |||||| ||| || || ||||| || || Sbjct 780 TCTTCCGCTGCCTGCGCCGCCCGGATCACGTCCCATCGCGCCGC-CCCAATCTCTGTGAA 722 Query 32723 TTTATCAAACGATTTTTCTTCTGAGCGGCGCATAAACTCATTGCTCATCACATACTGGAA 32782 || || ||||| ||| | | ||| ||||| |||| || | |||||||||||| || Sbjct 721 CTTCTCGAACGACTTTCACTGCG-GCGCCGCATGAACTGGTTACCCATCACATACTGAAA 663 Query 32783 GTCATCAACAATAACGATTCTTTTCCCG 32810 || ||||| ||||| | | || ||| Sbjct 662 ATCGTCAACCGCAACGAATTTCTTACCG 635 >seq47236 Length=1665 Score = 127 bits (140), Expect = 6e-25 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44689 GAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCT 44748 ||||||||| |||| ||||| | |||| |||||||||| | |||||||| || |||||| Sbjct 717 GAACTGAAGTTGGCAAACGCCACGATTAATGACATGCAGGTACGTCAGCGAGACGTTGCT 658 Query 44749 GCGCTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGA 44801 || |||||||| ||||| || ||||||||||||||||| || |||||||||| Sbjct 657 GCCCTCGATGCGAAATATACCAAGGAGTTAGCTGATGCGAACACTGAAAATGA 605 >seq46655 Length=2837 Score = 91.5 bits (100), Expect = 4e-14 Identities = 86/108 (80%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 22215 TTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAG--AAACCTCGTT 22272 |||||||||||||||||||| |||||||||| |||||||| || |||| ||| | |||| Sbjct 2282 TTGCGCCGCTTCAGGATGCTTCAGATCTGGATATTGCAACTGAAGAAGAAAAAGCGCGTT 2341 Query 22273 GCTGGAAGCCTGGAAGAAGTATCGGGTGTTGCTGAACCGTGTTGATAC 22320 | ||||||| || ||||| ||| |||| ||||| || ||||| Sbjct 2342 --TACTTTCCTGGAAAAAATATCGAGTGATGCTTAACCGCGTGGATAC 2387 >seq46735 Length=1212 Score = 87.8 bits (96), Expect = 5e-13 Identities = 129/181 (71%), Gaps = 9/181 (5%) Strand=Plus/Plus Query 40707 TTTTTGAGGGCGAACAAGGTAAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCGCCGG 40766 |||| || ||||| | || ||||| |||||||| || || || |||||| | || || | Sbjct 382 TTTTCGAAGGCGAGCGCGGGAAGCGCGACAGCATCATCGTTGTTGCTCAGCTCTCTCCCG 441 Query 40767 AATTCACCGCTCGTCTTGTTGACCGTTGGCGAGAGCTTGAAGGGGCA--ACC---GCGA- 40820 | || || || ||| | ||||| || |||| ||||||||| | ||| | | || | Sbjct 442 AGTTTACTGCACGTTTGGTTGATCGCTGGCATGAGCTTGAAAGCGCAGTATCTAAGCCAG 501 Query 40821 ---AAATCCCACAAACCTTCTCTGAAGCATTGCGCCTCGCGGCTGACCTTGAAGACCAGA 40877 ||||||| || | ||| | ||||| | ||| | || |||||||||||||| ||| Sbjct 502 TACAAATCCCTCAGTCATTCGCCGAAGCTCTTCGCATGGCTGCTGACCTTGAAGAAGAGA 561 Query 40878 A 40878 | Sbjct 562 A 562 >seq64133 Length=746 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 44879 CCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGG 44938 || ||||| || |||||||| ||| | | ||||||||| ||||| ||||| | |||| Sbjct 280 CCTCCGCCACCCGCGTGGATGATGATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGG 221 Query 44939 ATTATTTCACCCTCAGAGAG 44958 |||||||||||||||||||| Sbjct 220 ATTATTTCACCCTCAGAGAG 201 >seq64132 Length=632 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 44879 CCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGG 44938 || ||||| ||||||||||| ||| | | ||||||||| ||||| ||||| | ||| Sbjct 196 CCTCCGCCACCGGCGTGGATGATGATGGCAGCCCCCGACTTACAGACGCCGCTCAGTGGG 137 Query 44939 ATTATTTCACCCTCAGAGAG 44958 |||||||||||||||||||| Sbjct 136 ATTATTTCACCCTCAGAGAG 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150966046350000