Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq84058 407 4e-109 seq93587 370 3e-98 seq70443 316 5e-82 seq49821 277 5e-70 seq57448 149 2e-31 seq83242 104 6e-18 >seq84058 Length=491 Score = 407 bits (450), Expect = 4e-109 Identities = 374/469 (80%), Gaps = 3/469 (1%) Strand=Plus/Minus Query 4646 TGCTGAACGGCGACGGTACCGGGGAT-AACCTGGAAGGGCTGAACAAAGTGGCAACCGCC 4704 |||||||||| ||||| | || || ||||| ||||| || ||| ||||| || | Sbjct 490 TGCTGAACGGAGACGGCAAAGGCGACGAACCTTGAAGGTCT-AACGCGGTGGCCACACCG 432 Query 4705 TATGACACCTCGCTGAATGCCACCGGCGACACCCGCGCTGACATTATCGCTCACGCTATT 4764 |||||| | || ||||||||| |||| || || || |||||||| || ||||| || || Sbjct 431 TATGACGCTTCTCTGAATGCCTCCGGGGATACGCGTGCTGACATCATTGCTCATGCGATC 372 Query 4765 TATCAGGTGACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTCCTGAACCCGCGCGACTGG 4824 || ||||| || |||||||| |||||||| |||||||| |||| || || ||||||||| Sbjct 371 TACCAGGTCACTGAGTCTGAATTCAGCGCGTCCGGTATTATCCTTAATCCTCGCGACTGG 312 Query 4825 CACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATCTTCGGTGGTCCTCAGGCA 4884 |||| |||||| |||| |||||| ||| || || |||||||| || ||||| ||||| Sbjct 311 CACAGCATCGCACTGCTTAAAGACCGTGATGGTCGTTATATCTTTGGCGGTCCGCAGGCG 252 Query 4885 TTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACTAAGGCGCAGGCCGCCGGC 4944 |||||||| |||| |||||||||| |||| || || || || | |||||| |||| Sbjct 251 TTCACCAGCAACAACATGTGGGGCCTGCCTGTTGTGCCTACGCGTTCACAGGCCAGCGGC 192 Query 4945 ACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGGGATCGCATGGATGCCACC 5004 || ||||| || || ||||| || |||||||| ||||||||||| ||||||||||| || Sbjct 191 ACATTTACTGTTGGTGGTTTTGACATGGCCTCTCAGGTCTGGGACCGCATGGATGCAACG 132 Query 5005 GTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAACATGCTGACCATCCTGTGC 5064 || || || ||||| |||||||| || ||||| || ||||| |||||||| |||||||| Sbjct 131 GTTGAGGTCAGCCGCGAAGACCGGGACAACTTTGTCAAAAA-ATGCTGACAATCCTGTGT 73 Query 5065 GAAGAGCGTCTGGCGCTGGCGCATTATCGCCCGACAGCAATCATCAAGG 5113 || |||||||| || ||||| || |||||||| |||||||||||||||| Sbjct 72 GAGGAGCGTCTTGCTCTGGCTCACTATCGCCCTACAGCAATCATCAAGG 24 >seq93587 Length=445 Score = 370 bits (410), Expect = 3e-98 Identities = 341/430 (79%), Gaps = 1/430 (0%) Strand=Plus/Minus Query 1831 GTGAATGCGGTGGTGGTGAAAGATGCTGCTGGCAACCGCAAGCTCGATAAATCCAAAGCA 1890 || ||||| ||| | || ||||| || || |||||| | ||||| || |||||||||||| Sbjct 445 GTTAATGCCGTGATCGTCAAAGACGCAGCGGGCAACAGAAAGCTGGACAAATCCAAAGCA 386 Query 1891 ACGGGCCGTATTGATGGCATGGTCGCAATGACAATGTCCGTTGGTGCTGCTAATGGGGAA 1950 || ||||| ||||| || |||||||||||||| ||||| |||| || ||||| ||||| Sbjct 385 ACAGGCCGCATTGACGGTATGGTCGCAATGACCATGTCTATTGGCGCGGCTAACGGGGAG 326 Query 1951 GTTACCGAACAGGGTGGTGACTTCGACGACTTCATTTTCCGACCGCTGAGCATGTGATGG 2010 || || |||||||||||||| || |||||||||||| |||||||||||||||||||| Sbjct 325 GTCACTTTGCAGGGTGGTGACTTTGAAGACTTCATTTTCAGACCGCTGAGCATGTGATGG 266 Query 2011 AAGAACCTAAATACACGATTGACCTGCGAACCAATAACGGCTGGTGGGCAAGGCTGCAGT 2070 ||||||| |||| || ||||| || || ||||||||||| |||||||| ||| |||| Sbjct 265 AAGAACC-GAATATACAATTGATCTACGGACCAATAACGGTCTGTGGGCAAAGCTTCAGT 207 Query 2071 CCTGGTTTGTCGGCGGGCGTTTAGTCACCCCAAATCAGGGCTCACAGACGGGGCCTGTTT 2130 | ||||| ||||||||||| ||||| || || ||||||||||| ||| | || || || | Sbjct 206 CATGGTTCGTCGGCGGGCGCTTAGTTACGCCTAATCAGGGCTCGCAGTCCGGTCCGGTGT 147 Query 2131 CGGCCCACGGACACCTGGGCGATTCATCCATTAACGATGAACGGATACTGCAAATTTCGA 2190 | || ||| ||||| ||||| || | | ||||| ||||| || | || || |||| Sbjct 146 CTGCATCCGGGCACCTTGGCGACTCCGCAGTCAACGACGAACGAATTTTACAGATATCGA 87 Query 2191 CTGTGTGGCGCTGCGTGAGCCTGATTTCAACGCTCACGGCATGCTTACCGCTTGATGTCT 2250 | || ||||| || ||||| |||||||||||||| || |||| | || |||||||| | Sbjct 86 CGGTCTGGCGTTGTGTGAGTCTGATTTCAACGCTGACATCATGTCTGCCACTTGATGTGT 27 Query 2251 TCGAAACAGA 2260 |||| || || Sbjct 26 TCGAGACGGA 17 >seq70443 Length=468 Score = 316 bits (350), Expect = 5e-82 Identities = 324/421 (77%), Gaps = 4/421 (1%) Strand=Plus/Plus Query 25091 GCTATTTCATGGTCAGACTCAATTTGCTTTGCGAGAGCTTCAGCTGC--TGCCTTAGCTT 25148 || |||||||| || || || |||||| || || ||||| || ||| |||| Sbjct 1 GCAATTTCATGATCTGATTCGATTTGCGCCGCCAGCTTCTCAGCAGCAATGCGC--GCTT 58 Query 25149 CTTCTTCGGCTTTAATCCGTGCCTGCTCCTCCTCATAATCAGTAAGAGGCTGACGCGCCT 25208 | ||||| || || || ||| |||||||| |||| | || || | |||||||| |||| Sbjct 59 CCTCTTCAGCCTTGATGCGTTCCTGCTCCGCCTCCCAGTCCGTTACTGGCTGACGGGCCT 118 Query 25209 TGGCTTTCAGCTCATCAAGTCGATCACGCACTGTCTTGCGGTTGGCATCAATTAGCTTTG 25268 | | |||| |||| ||||| ||||| ||||||||||||||||| || |||||||| | Sbjct 119 TATCGCGCAGCACATCCAGTCGGTCACGTACTGTCTTGCGGTTGGCGTCGATTAGCTTCG 178 Query 25269 GAATTTCCTTCAGTTCAGCAACAAGGTCTTTTCCAAGACCATCGAGATATGTTTTCGTCT 25328 | | || |||||||| ||||| | || || || | |||||| || || | |||||||| Sbjct 179 GCACCTCTTTCAGTTCGGCAACCAAATCCTTACCCAAACCATCCAGGTAAGATTTCGTCT 238 Query 25329 GCGCAACTTTATACGCCAGAGAAGCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAG 25388 | | || || ||||| ||||||||||||||||||||||| ||||| |||| ||| | Sbjct 239 GTGATACACGGTAGGCCAGTGAAGCGATCTCCTTTCTGCCCTTCGCCGTGGTGACATCCG 298 Query 25389 GCACAAAGGACATAACTTCACGTTCAACCTTTTGGAGAATTTCTTCAATCTGGTCGGCAG 25448 |||||||||||||||||||||| || ||||| || |||||||||||||||||||| |||| Sbjct 299 GCACAAAGGACATAACTTCACGCTCGACCTTCTGAAGAATTTCTTCAATCTGGTCAGCAG 358 Query 25449 ACTGAAATACAGTCATTGCATTTGCTTTTTCAATAACAACTAAATCTGTTACTTCACTCA 25508 ||| ||| || || | ||||| || || ||||| || || ||||| ||| ||| |||| Sbjct 359 ACTTAAAAACGGTGAGGGCATTAGCCTTCTCAATGACTACCAAATCCGTTGATTCGCTCA 418 Query 25509 T 25509 | Sbjct 419 T 419 >seq49821 Length=2150 Score = 277 bits (306), Expect = 5e-70 Identities = 465/660 (70%), Gaps = 26/660 (4%) Strand=Plus/Minus Query 23381 TGCCATTAAGCAGCCGCTCCTTCTAATTCG--TCTCGTCTGATGTTGTAAACGTCCTGCG 23438 |||||||| || | |||||||| | || | || || |||| || || |||| || Sbjct 1986 TGCCATTATGCGGTAGCTCCTTCAAGCTCTGATTTCTTC--ATGTCATAGACTTCCTTCG 1929 Query 23439 CTTTGTGCTGCTCCGGTGTTCCTTCGAGCATCTTCCACGCTTTGGCGAACGCCTGTTTAA 23498 |||| ||||||||| ||||| || ||||||| ||| |||||||| || | ||| || | Sbjct 1928 CTTTAGCCTGCTCCGGAGTTCCGTCAAGCATCTGCCATGCTTTGGCAAATGACTGCTTGA 1869 Query 23499 GCTCTTCCACGGTGtttttttGCATTGCTGCGTCAGTGAATGCTTTTAGAACCTGTTCAG 23558 | ||||| || | || | | || || |||| ||| || |||| ||| | Sbjct 1868 GATCTTCAGGATTGGTCTTATTAAGCGCAGCCTCAGAGAAGGCAGCGAGAA--TGTC--G 1813 Query 23559 GTGTAGGTGATGGTTTTGA-TTGCTTTGCT-----GCTGCGTTCTGCTGATGTTTATGTT 23612 | | ||| |||||||| ||||| || |||| ||||||| || ||| | Sbjct 1812 GCG--GGTTTTGGTTTTGGCTTGCTCTGTGCGGGCGCTGATGTCTGCTGCTGGCGATGCT 1755 Query 23613 CGTCGGTATCTGCATCTTTCGCATCATCAATGCCGAACAAACCATTAAGGCAATACTTGC 23672 ||| ||| || ||||| || | ||||||||||| ||||| || |||||||| ||||||| Sbjct 1754 CGTTGGTGTCCGCATCCTTTGAGTCATCAATGCCAAACAATCCGTTAAGGCAGTACTTGC 1695 Query 23673 GCGCATAAGAGCTTGTAGCTCCAGTAACTTGTGCAGAATCCATTCCTTTCTTGCTTTCTT 23732 | ||||| || || || || || ||||| ||||||| ||||| ||||| ||| |||| Sbjct 1694 GGGCATATGAACTGGTTGCGCCTGTAACCTGTGCAGCGTCCATGCCTTTTTTG-ACTCTT 1636 Query 23733 CCTCTCGTGCAAGAGCAGTTGCCGTATGACTGTTTTCGCCATCGGTAATAGTTGCCGTGG 23792 |||| || || | || || || ||| | | |||||||| || || | ||| || | Sbjct 1635 CCTCACGCGCCATTGCTGTAGCGACGTGAGTTGTCTCGCCATCAGTTATTGATGCAGTTG 1576 Query 23793 CTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTGATTGATAAAAACAGGC 23852 | ||||||||| |||||||| | || | ||||| ||||| | |||||| | Sbjct 1575 CCCGCACGTAATAGCGATCACCTACTGGAACTATCTCATCAGAAATTGAAAGAAACAGTC 1516 Query 23853 CATTCAGTAACGGCTTAACGCCTTCAAGAATGTCTTCGCAGCTTCTGTATTTATATTTAC 23912 | || || | ||||| || || |||||||||||||| ||||| | ||||| || || | Sbjct 1515 CGTTGAGGAGTGGCTTTACTCCCTCAAGAATGTCTTCACAGCTGCGATATTTGTACTTGC 1456 Query 23913 CGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTCCTG-AATAGCTGCCAGTCTT 23971 || | ||||||||||||||||||||| ||||| || ||| | | | || |||| | Sbjct 1455 CG-AGCTGTTGTACTGATTCTTTGGCGCATTCAGCGTCCGCTGTATTCTCAGCGAGTCGT 1397 Query 23972 GCGTAAAATT-CTTTGCTCA--TATGATTGTTCTCAGAATGGACACGGCCCAAGGAAATA 24028 || || |||| ||||||||| || | ||||||| || || ||||| |||||||| Sbjct 1396 GCATAGAATTCCTTTGCTCACTTACCA----CCTCAGAACGGGCATGGCCCGAGGAAATA 1341 >seq57448 Length=845 Score = 149 bits (164), Expect = 2e-31 Identities = 309/458 (67%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 15081 GAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 15140 |||||||| || ||| |||||||| ||||| |||||||||||||| | || | ||| Sbjct 243 GAGGTGATAGACAGCAAGCTGCGCTATCCGAATACCGCGCTGCTCTATATTGAGGTAGAC 302 Query 15141 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 15200 | || ||||| || || ||| ||||| | ||| |||| || | | Sbjct 303 GCCAGTCAGTTTAATGGTCAGGCACCTAAAATTACCTGCAAACCAAAAGGTAAGCTGGTG 362 Query 15201 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 15260 ||||| || ||||| ||||| | || |||| |||| |||| ||||| |||| Sbjct 363 CGCGTGCCTACGACCTATGACCCGGTAAGTCGCAGCTATAACGGTTCATGGCAGGGTGAT 422 Query 15261 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 15320 || || | || | || | ||||| || |||||||||||||| |||||| | ||| Sbjct 423 TTCAAATACGCCTATACCAACAACCC-GCATGGATTTTTTACGATCTGGTTCTG---GAC 478 Query 15321 CGGTTT---GGCCTCGGGCACCGTTTGACCGCTGCGAATATTGATAAATGGACTCTTTAT 15377 | || || | || |||| | || | | |||||||| ||| || || Sbjct 479 AAGATTTATGGTATGGGAACCCGTGTCGATGCATCCATGATTGATAAGTGGGAACTATAC 538 Query 15378 CAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAA 15437 |||| ||||||||||||||| || || | ||| ||| |||||| || Sbjct 539 GCCATTGCCCAGTATTGTGATCAGCCCGTGCCGAATGGCGCAGG------CGGTACCGAG 592 Query 15438 CCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGT 15497 ||||| | |||||||||||| | ||||||| ||| | | ||||||||||| || || Sbjct 593 CCACGATTTACCTGCAACGTTTTCATTCAGAACCAGCAGGACGCCTACACCGTTCTCAAG 652 Query 15498 GATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGG 15535 || ||||||| ||||||||||| || || | |||||| Sbjct 653 GACATTGCCGCCATCTTCCGTGGAATTACTTTCTGGGG 690 >seq83242 Length=311 Score = 104 bits (114), Expect = 6e-18 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 3713 CTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATG 3772 ||| ||||||||||| ||||||| | || |||||||| || || | | || | | Sbjct 222 CTGAGCGAAATCAGCATCTGCACCATGCCGGCCAACGAGCACGCCACCGTGGCCTCGCTC 163 Query 3773 AAAAGTGTCGATGGCATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAGTC 3832 || || | || ||||| |||| ||||| |||| |||| |||||||| | ||| ||| Sbjct 162 AAGAGCATGGACGGCATCGAAAGCATTCGCGATGCGGAGCACTGGCTGCGAGATGCAGCT 103 Query 3833 GGCCTCACCAAATCACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGATTCGGAGC 3892 |||||| |||| || |||| | | | || ||||| | ||||| || ||||||| Sbjct 102 GGCCTCTCCAAGTCCGAGGCGCAGGCGTTCATCGCCCGCATCAAGTCCGCAGTTCGGAGT 43 Query 3893 GAGTCCGAGGGC 3904 |||||||| ||| Sbjct 42 GAGTCCGAAGGC 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126332221644000