Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019716.1 Length=44510 Score E Sequences producing significant alignments: (Bits) Value seq60335 273 6e-69 seq47236 205 3e-48 seq67121 197 4e-46 seq67120 161 3e-35 seq67119 159 1e-34 seq62093 145 2e-30 seq43257 134 4e-27 seq94687 104 7e-18 seq47560 95.1 3e-15 seq80232 82.4 2e-11 >seq60335 Length=1976 Score = 273 bits (302), Expect = 6e-69 Identities = 464/662 (70%), Gaps = 14/662 (2%) Strand=Plus/Minus Query 40776 TGCCAGTTAATACTGACTCAGTTAGTTCTGGCGGGTCTGGCGAAGGATAA-CGGCGGGTA 40834 |||||| | || |||||||| | | | |||| ||| |||| | | ||| |||| Sbjct 1182 TGCCAGCTTATTTTGACTCAGCTGGCTATGGCAGGT-----GAAGATTTATCGGGGGGT- 1129 Query 40835 CGGGAATAAATTCAGACGCTGCCAGTAATG-GCGGT-TTCCTGCTGTGAAAATGGGCGGC 40892 || | || ||||| |||||| ||| || | ||| |||||||||||||||||| Sbjct 1128 -GGAGAGAATTTCAGGCGCTGCGGATAACCCGCAGCATTCACGCTGTGAAAATGGGCGGC 1070 Query 40893 TGGT-GGGTGTTGGTAGCACCTG-CCAGCCATTCGCTCATGCTTACTGGTCACAAGCGAA 40950 ||| ||||||||| ||||||| ||||||||||||||||| || | ||| |||| || Sbjct 1069 TGGCAGGGTGTTGG-AGCACCTTACCAGCCATTCGCTCATGGGTAA-GATCATAAGCAAA 1012 Query 40951 CCACGGCCCACTGCTTTAGCGCAAAAGCAGAGTGAGCCTACCAGAGTTACGCTTACTGAT 41010 || ||||||||||||||||||||||||| |||||||||| |||||| | ||||| ||| Sbjct 1011 CCGAGGCCCACTGCTTTAGCGCAAAAGCACAGTGAGCCTATCAGAGTAAAGCTTAGGGAT 952 Query 41011 CCATGAAAAATACTGTAAAAATAAACAGTGCTGATTTAATCAACGCTGATTGCCTGCATT 41070 | ||| ||||||||||||| |||||||| | || | | || ||||||| ||||| | Sbjct 951 CTATGGAAAATACTGTAAATTCAAACAGTGTTAATCTGGTTAATGCTGATTCACTGCAAT 892 Query 41071 TTATTCAGTCCCTGCCTGATGATTCCATTGACCTGATTGTTACCGATCCGCCGTACTTCA 41130 | || | |||| || || ||| |||||||||| | ||||| || || || ||| Sbjct 891 TCATCAAAACCCTTCCAGACAGTTCTGTTGACCTGATCGCCACCGACCCACCTTATTTCC 832 Query 41131 AGGTGAAACCCAACGGCTGGGACAATCAGTGGAAAGGGGACGAAGATTACCTTAAGTGGC 41190 || ||| | ||||| ||||||||||| | || ||| |||||||| ||||| Sbjct 831 GTGTTAAAGCGTGTAAATGGGATAATCAGTGGAAGAGTGAGGAACATTACCTTTCGTGGC 772 Query 41191 TGGACCACTGTCTGGCCCAGTTCTGGCGGGTGTTAAAACCTGCCGGAAGCCTTTACCTGT 41250 | | | ||| | ||||||||||||| | ||||| | || || ||||| ||| Sbjct 771 TTTATGAGCTTCTTTCAGAGTTCTGGCGGGTACTTAAACCGTCAGGCAGTCTTTATATGT 712 Query 41251 TCTGTGGGCATCGCCTGGCATCTGATATTGAGATCATGATGCGTGAACGTTTCAACGTGC 41310 | || || ||||||||| |||| | || | || | || | || ||| | ||| Sbjct 711 TTTGCGGTTCCCGCCTGGCAGCTGACACCGAATTACTGGTTCGCAATCGGTTCGATGTGT 652 Query 41311 TTAACCATATCATCTGGGCGAAGCCGTCCGGACGTTGGAATGGGTGTAATAAAGAAAGTC 41370 | | ||||| | ||||| || || || | |||| || || ||||| ||| Sbjct 651 TGAGTCATATTGTGTGGGCCAAACCACATGGCCCATGGATGAGGCAAAACAAAGAGAGTT 592 Query 41371 TGCGCGCATATTTTCCTGCCACAGAGCGCGTTCTGTTTGCTGAACATTACCAGGGGCCAT 41430 |||| || | ||| ||||| || || || | | ||||||| ||||| ||||| | Sbjct 591 TGCGGGCTTTTTTCCCTGCGACGGAACGAATAATTTTTGCTGCGCATTATGCCGGGCCTT 532 Query 41431 AT 41432 || Sbjct 531 AT 530 >seq47236 Length=1665 Score = 205 bits (226), Expect = 3e-48 Identities = 225/298 (76%), Gaps = 20/298 (7%) Strand=Plus/Minus Query 43379 GAGCTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAACGCCAGCGTGCTGCTGAT 43438 || |||||| ||| | |||||| |||| |||||||||| ||| ||||| | | || | Sbjct 717 GAACTGAAGTTGGCAAACGCCACGATTAATGACATGCAGGTACGTCAGCGAGACGTTGCT 658 Query 43439 GTACTCGATGCTAAATACACGAAGGAGTTGGCTGATGCGAAAGCTGAAAATGATGCTCTT 43498 | |||||||| ||||| || |||||||| ||||||||||| |||||||||| ||| Sbjct 657 GCCCTCGATGCGAAATATACCAAGGAGTTAGCTGATGCGAACACTGAAAATGACAGGCTT 598 Query 43499 CGGCGC-AAGCTTGATAATGGTGGTCGGGTGCTCGTCAAAGGAAAATGCTCTGTGCCATC 43557 | |||| ||||| | | |||||| ||||||| |||| ||| |||| Sbjct 597 C-GCGCTAAGCTGGCTGCTGGTGGCCGGGTGCGGGTCACAGGCGAATG------------ 551 Query 43558 CTCAGCCGAAACCTCCAGCGCCTCCGGCA---TGGGCAATGATGCCACCGTCGAACTCTC 43614 | | ||| || |||| | ||||||||| ||||||||| | |||||||||||||| Sbjct 550 -TAAACCGGAA--TCCACCACCTCCGGCAGCGTGGGCAATGCAGGAACCGTCGAACTCTC 494 Query 43615 TCCAGTTGCTGGACGAAACGTTCTCGGTATCCGGGACGGAATCATCAGAGACCAGACA 43672 ||||||||||||| |||||||||| ||||||| | |||||||||||| |||||| || Sbjct 493 TCCAGTTGCTGGATCAAACGTTCTCAGTATCCGAGCCGGAATCATCAGCGACCAGTCA 436 >seq67121 Length=639 Score = 197 bits (218), Expect = 4e-46 Identities = 281/394 (71%), Gaps = 1/394 (0%) Strand=Plus/Plus Query 35844 GGTGATCAGTGGCGCACGCCGGACAACATTTTCTGGGGAATTAACACCCTGTTTGGCCCG 35903 || ||||| ||||||||||| || | | |||||||| ||| | |||| || ||| Sbjct 27 GGCGATCAATGGCGCACGCCTGATCCGCTCTGGTGGGGAATAAACTCGATGTTCGGTCCG 86 Query 35904 TTTGTTCTGGATCTGTTCACTGACGGTGATAACGCCAAATGTGCCGCGTATTACACGGCG 35963 || || ||||| || ||| | || | ||| |||||||| | | ||||||| || Sbjct 87 TTCGTGCTGGACCTCTTCGCCGATGAGAGTAATGCCAAATGCGAGTCTTATTACAGCGCC 146 Query 35964 GAAGACAACGCGCTGGCGCATGACTGGTCAGAACGCCTTGTGGAGCTTAAAGGTGCTGCC 36023 ||||| ||||| || |||| |||||||| |||||||| | ||| | || || ||||| Sbjct 147 GAAGATAACGCACTTTCGCA-GACTGGTCGGAACGCCTGGCAGAGTTAAACGGCGCTGCT 205 Query 36024 TTTGGTAATCCTCCATACAGCCGCGCCAGTCAGCATGAGGGGCAATACATCACCGGCATG 36083 | | ||| || || || |||||| ||||| || ||||| ||||| ||||||||| Sbjct 206 TACGCTAACCCACCCTATTCACGCGCCTCACAGCACGACGGGCAGTACATAACCGGCATG 265 Query 36084 CGTTACATCATGAAACATGCCAGTGCCATGCGTGATAAGGGCGGGCGCTATGTTTTCCTG 36143 || | || ||| ||| | | ||||| || ||||| |||||||| || || Sbjct 266 CGCCAGATAATGGCCCATACGCTGGAAATGCGGGAGGCTGGCGGCCGCTATGTCTTTCTT 325 Query 36144 ATCAAAGCTGCCACCAGCGAAGTGTGGTGGCCGGAAGATGCAGATCATATTGCTTTTATT 36203 || ||||| || || ||||||| |||||||| || ||||| || ||||| || || ||| Sbjct 326 ATTAAAGCGGCAACTGGCGAAGTCTGGTGGCCAGAGGATGCCGACCATATCGCATTCATT 385 Query 36204 CGCGGGCGTATTGGTTTTGAACTGCCTGTCTGGT 36237 || || || || ||||||| ||||| | |||| Sbjct 386 CGGGGCCGAATCAGTTTTGACCTGCCCGCATGGT 419 >seq67120 Length=623 Score = 161 bits (178), Expect = 3e-35 Identities = 280/399 (70%), Gaps = 16/399 (4%) Strand=Plus/Plus Query 35844 GGTGATCAGTGGCGCACGCCGGA-CAACATTTTCTGG--GGAATTAACACCCTGTTTGGC 35900 || ||||| ||||||||||| || | | ||||| || || || | |||| ||| Sbjct 16 GGCGATCAATGGCGCACGCCTGATCCGC----TCTGGTGGGCATAAATTCGATGTTCGGC 71 Query 35901 CCGTTTGTTCTGGATCTGTTCACTGACGGTGATAACGCCAAATGTGCCGCGTATTACACG 35960 ||||| | ||||| || ||| | || | ||| || ||||| | | ||||||| Sbjct 72 CCGTTCATGCTGGACCTATTCGCCGATGAGAGTAATGC-AAATGCGAGTCTTATTACAGC 130 Query 35961 GCGGAAGACAACGCGCTGGCGCATGACTGGTCAGAACGCCTTGTGGAGCTTAAAGGTGCT 36020 || ||||| ||||| || |||| |||||||| |||||||| | ||| | || || ||| Sbjct 131 GCCGAAGATAACGCACTTTCGCA-GACTGGTCGGAACGCCTGGCAGAGTTAAACGGCGCT 189 Query 36021 GCCTTTGGTAATCCTCCATACAGCCGCGCCAGTCAGCATGAGGGGCAATACATCACCGGC 36080 || | | ||| || || || |||||| ||||| || ||||| ||||| |||||| Sbjct 190 GCTTACGCTAACCCACCCTATTCACGCGCCTCACAGCACGACGGGCAGTACATAACCGGC 249 Query 36081 ATGCGTTACATCATGAAACATGCCAGTGCCATGCGTGATAAGG--GCGGGCGCTATGTTT 36138 ||||| | || ||| ||| | || ||||| | ||| |||| ||||| || | Sbjct 250 ATGCGCCAGATAATGGCCCATACGCTGGCAATGCGCG---AGGCTGCGGTCGCTACGTCT 306 Query 36139 TCCTGATCAAAGCTGCCACCAGCGAAGTGTGGTGGCCGGAAGATGCAGATCATATTGCTT 36198 || || ||||| || || ||||||| |||||||| || ||||| || ||||| || | Sbjct 307 TC--TATTAAAGCGGCAACTGGCGAAGTCTGGTGGCCAGAGGATGCCGACCATATCGCAT 364 Query 36199 TTATTCGCGGGCGTATTGGTTTTGAACTGCCTGTCTGGT 36237 | ||||| || || || ||||||| ||||| | |||| Sbjct 365 TCATTCGGGGCCGAATCAGTTTTGACCTGCCCGCATGGT 403 >seq67119 Length=799 Score = 159 bits (176), Expect = 1e-34 Identities = 270/385 (70%), Gaps = 6/385 (2%) Strand=Plus/Plus Query 35844 GGTGATCAGTGGCGCACGCCGGACAACATTTTCTGGGGAATTAACACCCTGTTTGGCCCG 35903 || ||||| |||||||| || || | | ||||| || || | |||| |||||| Sbjct 164 GGCGATCAATGGCGCACTCCCGATCCGCTCTGGTGGGGCATAAATTCGATGTTCGGCCCG 223 Query 35904 TTTGTTCTGGATCTGTTCACTGACGGTGATAACGCCAAAT-GTGCCGCGTATTACA--CG 35960 || | ||||| || ||| | || | ||| || |||| | | ||||||||| || Sbjct 224 TTCATGCTGGACCTCTTCGCCGATGAGAGTAATGCAAAATAGCGAAGCGTATTACCAGCG 283 Query 35961 GCGGAAGA-CAA-CGCGCTGGCGCATGACTGGTCAGAACGCCTTGTGGAGCTTAAAGGTG 36018 || |||| ||| ||| || |||| ||||||| |||||||| | ||||| || || | Sbjct 284 CCGAAAGATCAATCGCCCTTTCGCAA-ACTGGTCGGAACGCCTGGCAGAGCTAAACGGCG 342 Query 36019 CTGCCTTTGGTAATCCTCCATACAGCCGCGCCAGTCAGCATGAGGGGCAATACATCACCG 36078 | || | | ||| || || || ||||||| ||| | || ||||| ||||| |||| Sbjct 343 CAGCATACGCTAACCCACCCTATTCCCGCGCCTCGCAGTACGACGGGCAGTACATTACCG 402 Query 36079 GCATGCGTTACATCATGAAACATGCCAGTGCCATGCGTGATAAGGGCGGGCGCTATGTTT 36138 ||||||| | || ||| ||| | || |||||||| || || ||||| || | Sbjct 403 GCATGCGCCAGATAATGGCCCATACGCTGGCAATGCGTGAGGCTGGTGGTCGCTACGTCT 462 Query 36139 TCCTGATCAAAGCTGCCACCAGCGAAGTGTGGTGGCCGGAAGATGCAGATCATATTGCTT 36198 | ||||| ||||| || || ||||||| |||||||| || ||||| || ||||| || | Sbjct 463 TTCTGATTAAAGCGGCAACTGGCGAAGTCTGGTGGCCAGAGGATGCCGACCATATCGCAT 522 Query 36199 TTATTCGCGGGCGTATTGGTTTTGA 36223 | ||||| || || || ||||||| Sbjct 523 TCATTCGGGGCCGAATCAGTTTTGA 547 >seq62093 Length=1065 Score = 145 bits (160), Expect = 2e-30 Identities = 209/291 (72%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 35933 TAACGCCAAATGTGCCGCGTATTACACGGCGGAAGACAACGCGCTGGCGCATGACTGGTC 35992 ||| |||||||| | |||||||||| || || || ||||| || |||| |||||| Sbjct 20 TAATGCCAAATGCGAGGCGTATTACAGCGCCGA-GATAACGCACTT-CGCAG--CTGGTC 75 Query 35993 AGAACGCCTTGTGGAGCTTAAAGGTGCTGCCTTTGGTAATCCTCCATACAGCCGCGCCAG 36052 ||||| || | ||||| || || || || | | ||| || || || ||||||| Sbjct 76 TGAACGTCTGGCAGAGCTAAATGGAGCAGCATACGCTAACCCACCCTATTCCCGCGCCTC 135 Query 36053 TCAGCATGAGGGGCAATACATCACCGGCATGCGTTACATCATGAAACATGCCAGTGCCAT 36112 ||| | || ||||| ||||| ||||||||||| | || ||| ||| | || || Sbjct 136 GCAGTACGACGGGCAGTACATTACCGGCATGCGCCAGATAATGGCTCATACGCTGGCAAT 195 Query 36113 GCGTGATAAGGGCGGGCGCTATGTTTTCCTGATCAAAGCTGCCACCAGCGAAGTGTGGTG 36172 |||||| || || ||||| || || ||||| ||||| || || ||||||| ||||| Sbjct 196 GCGTGAGGCTGGTGGTCGCTACGTCTTTCTGATTAAAGCGGCAACTGGCGAAGTCTGGTG 255 Query 36173 GCCGGAAGATGCAGATCATATTGCTTTTATTCGCGGGCGTATTGGTTTTGA 36223 ||| || ||||| || ||||| || || ||||| || || || ||||||| Sbjct 256 GCCAGAGGATGCCGACCATATCGCATTCATTCGGGGCCGAATCAGTTTTGA 306 >seq43257 Length=1618 Score = 134 bits (148), Expect = 4e-27 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 43005 GTACCACTGACCGAACCACAGAAAGCGGGTATAGCGTCATTTTGTCCCTATAACATTGGC 43064 || |||||||||||||| ||||| | || ||||||||||| ||||| | ||||||||| Sbjct 850 GTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCGTCATTCTGTCCGTGGAACATTGGC 791 Query 43065 CCCGGTAAGTGTTTCCCGTCGACGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGT 43124 |||||||| || | || || ||||| || | || || || || ||||| |||| Sbjct 790 CCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAACTAAACGCAGGCGATCGCCTGGGT 731 Query 43125 GCATGTGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCA 43184 ||||||| | ||| | |||||| || || ||| ||||||||||| || || Sbjct 730 GCATGTGCAGAGATAAAGCGCTGGATATTCGACGGCGGGAAAGATTGCCGCATTCGCTCT 671 Query 43185 AATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAA 43223 ||| ||| || || || ||||| || |||||||||||| Sbjct 670 AATGGCTGTTACGGGCAAGTTATCCGCCGTGACCAGGAA 632 >seq94687 Length=638 Score = 104 bits (114), Expect = 7e-18 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 32062 TGTTCAGTGAATTGTTTCTGCTTACCTGTTTCCAGGCGCGAGATATTCGCCGCATCCACT 32121 ||||| || ||| ||| ||||| || ||||| ||||| |||||||| || | || ||| Sbjct 277 TGTTCCGTAAATGATTTTTGCTTTCCAGTTTCAAGGCGTGAGATATTTGCACCGTCAACT 336 Query 32122 CCTATTGCTTCAGCGAGATCGGCGATTTTCATGTTCTTCGCCTGGCGAAGTTGTCTGACT 32181 || | |||||||| || || | ||||||||| | || | || || ||| | | Sbjct 337 CCAACGGCTTCAGCAAGCTCTTCAATTTTCATGCCCCGAGCTTTACGCAGGCTTCTAATT 396 Query 32182 CGGTTTCCTATGTTCATGCGTTTATTACATTTCTTTATTGCGCGTTAAGCAAATCAACTT 32241 ||||||||||||||| | | |||||| ||| |||| || |||||| | ||| Sbjct 397 TTATTTCCTATGTTCATGGGCTAATTACAAATCTCATTTGCAAAATACGCAAATTATCTT 456 Query 32242 GCGCAAAATATTTGCGTGAAATAATATGCTCATCACGCAATATGTGGAGGT-TATATGCA 32300 |||||| | | | |||||||||| || ||||||| || |||||| | ||||| Sbjct 457 GCGCAAGTTGATGCATTCTAATAATATGCGAATTACGCAAT-TGAGGAGGTGAAAATGCA 515 Query 32301 A 32301 | Sbjct 516 A 516 >seq47560 Length=1078 Score = 95.1 bits (104), Expect = 3e-15 Identities = 212/315 (67%), Gaps = 9/315 (3%) Strand=Plus/Minus Query 38649 GATCCGGAGTCGCCGGAGTCTTTTATGTTACGCCCAAAACGTCGCCGCTGGGTTAATGAA 38708 || || || ||||| ||||| || ||| || || || || | || |||| | | Sbjct 828 GACCCTGAATCGCCTGAGTCATTCATGAGGCGACCGAAGCGCAGGCGATGGGAGAGCCAG 769 Query 38709 AAGTACACGCGCTGGGTTAAGACACAGCCGTGTGCATGTTGTGGAAAGCCCGCTGATGAT 38768 ||||| || | ||||||||| | ||| ||| |||| || || | || ||||| Sbjct 768 AAGTATACACAGTGGGTTAAGGCGCAGAAATGTTCATGCTGCACCAATCAGGCAGATGAC 709 Query 38769 CCCCACCACCTGATAGGTCACGGTCAGGGTGGAATGGGAACAAAAGCGCATGACCTTTTT 38828 || || ||| | || || || |||||||| || ||||||||||| || ||||| | || Sbjct 708 CCGCATCACATCATCGGACATGGTCAGGGAGGTATGGGAACAAAGGCACATGATTTATTC 649 Query 38829 GTGTTGCCTTTGTGCAGAAAGCATCACGACGAGCTGCA-TGCG---GATACCGTGGCATT 38884 ||| | || | ||||| ||||||||||||| | || ||| | | | | || Sbjct 648 GTGATTCCGCTTTGCAGGGCGCATCACGACGAGTTACACCGCGACCCAAAACTT----TT 593 Query 38885 TGAAGAGAAGTATGGCTCCCAGCTGGAGCTGATATTTCGTTTTATCGATCGTGCGCTGGC 38944 ||| ||| || ||| ||| | || ||| |||| || ||| | |||| || | || Sbjct 592 TGAGTCGAATTACGGCAGTCAGATTGAACTGTTATTCCGGTTTCTTGATCACGCTATTGC 533 Query 38945 AATTGGCGT-ATTGG 38958 | ||||||| ||||| Sbjct 532 AGTTGGCGTCATTGG 518 >seq80232 Length=325 Score = 82.4 bits (90), Expect = 2e-11 Identities = 117/160 (73%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 43324 TCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGTGATAAAAAAGTCAGTGA--G 43381 ||| ||||| || |||||| || | | || |||||||||||| | | ||| | Sbjct 102 TCACTACCGCGACAACGCCGTCTATTTCCGCGATCAGCGTGATAAACA-GAAGGTGGTTG 160 Query 43382 CTGAAGCAGGCGAC-CGCCACCATTACTGACATGCAGCAACGCCAGCGTGCTGCTGATGT 43440 |||| ||| | | ||| ||||| | ||||||||||| |||||||| ||| || | Sbjct 161 CTGA--CAGCCTCCACGCAACCATCAATGACATGCAGCGACGCCAGCAGTCTGTTGCGGC 218 Query 43441 ACTCGATGCTAAATACACGAAGGAGTTGGCTGATGCGAAA 43480 | ||||||| |||||||||||||| || || |||||| || Sbjct 219 AATCGATGCCAAATACACGAAGGATTTAGCCGATGCGCAA 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142090201339200