Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq48793 223 1e-53 seq38246 217 4e-52 seq57448 122 3e-23 seq70398 109 2e-19 seq46473 107 6e-19 seq58927 93.3 1e-14 seq37294 87.8 5e-13 seq93648 80.6 8e-11 >seq48793 Length=1217 Score = 223 bits (246), Expect = 1e-53 Identities = 400/577 (69%), Gaps = 18/577 (3%) Strand=Plus/Minus Query 35858 GCCAGATCTGGACTTCAACAACACTGACTGGGCCTATGGGGTGATCCGATGAAATCTCTT 35917 ||||| ||||||| ||||||||| |||||| | | ||||||||| |||||| || Sbjct 839 GCCAGCCCTGGACTACAACAACACCGACTGGATCCACGGGGTGATCGAATGAAAAGCATT 780 Query 35918 GCAGAGCAGATGCGTAACCACGACCGCGAGCAGATGAGCCGCATGGCCCATAAC---CTG 35974 || || |||||| ||||| ||||| || | |||| || | || |||| ||| Sbjct 779 GCTGAACAGATGGTTAACCTTGACCGTGAAAACATGAAACGTGTTGC---TAACGGTCTG 723 Query 35975 CCAGAGCAGTACCAGGAG--TGCGC----GCCGGTCGAGCAGGTGGCGCAGGTATTCAAC 36028 | || | | |||||| ||| | || || |||| ||| || | | || || Sbjct 722 GCGGA--AAT-CCAGGACGATGCACCGCAGCAGGCAGAGCGGGTAGCCGAAATTTTTAAT 666 Query 36029 AAGCTGTTCAACGAGCTGCGCGCCGCGTTCCCGGCCAGCATGGCGAACTTCCGCACCCAG 36088 | ||| || || |||| || || |||||||| |||||| || | || |||||| Sbjct 665 ACGCTCTTTGGTCAGTTGCGTGCGGCTTTCCCGGCTGCCATGGCAAATCTGCGTACCCAG 606 Query 36089 GAAGACCTGAACGAATTCCGCCGTCAGTGGCTGCTGGCGTTTCAGGAGAACGGGATCCAC 36148 || || || ||||||||||| || |||||||| || | || | |||||||||||| | Sbjct 605 GAGGAACTAAACGAATTCCGGCGCCAGTGGCTTTTGTCATTCCGCGAGAACGGGATCACC 546 Query 36149 ACCATGGCTCAGGTCGATGCCGGCATGCGCATTGCCCGCCGCCAGGAGCGCCCATTCCTG 36208 || |||||||||||| | || |||||||| ||||| ||||| || |||||| Sbjct 545 ACAATGGCTCAGGTCAACGCTGGCATGCGGGCAGCCCGTAAACAGGAAAAACCCTTCCTG 486 Query 36209 CCGTCGCCGGGCCAGTTCGTCGCCTGGTGCAAGCAGAGCGGCGGCGCGCTGGGCGTCAAC 36268 || || ||||| |||||||||||||||||| || || ||||| | || ||| | Sbjct 485 CCTTCCCCGGGTCAGTTCGTCGCCTGGTGCCGTGAGGGCAAGGGCGCATTAGGGATCACC 426 Query 36269 GTTGACCAGGTGATCGCCGAATACTGGGACTGGCGTA-ACCGCTCGTTCGAATTCATCTC 36327 | | ||||| | |||| |||| ||||||| | || | ||| | | | Sbjct 425 GCCGCTGAGGTGCTTAAAGAATTCTGGCACTGGCGCAGGACGGT--TTCCGGTACCCGAC 368 Query 36328 CAGCGAGCAATTTCCATGGTCGCAGCCGGTCATGTACCACATTTGCGTAGAATTGCGCCA 36387 |||||| |||| ||| ||||| ||| |||| ||||| ||||| ||| | ||||| |||| Sbjct 367 CAGCGAACAATATCCGTGGTCACAGGCGGTTATGTATCACATCTGCCTGGAATTACGCCG 308 Query 36388 CCGCAGCACCGAGCGCCAGTTAACGCATGGTGAACTG 36424 |||||||| ||||| ||| | || | ||||||| Sbjct 307 CCGCAGCAATGAGCGTCAGCTTACCGAACCTGAACTG 271 >seq38246 Length=2704 Score = 217 bits (240), Expect = 4e-52 Identities = 343/490 (70%), Gaps = 6/490 (1%) Strand=Plus/Plus Query 25867 CGCAGCGCTTCAAGGCGGCGCAGGTCGAAGTCGTTCAGTTCGTCGGTGTAGTCAGCAGTG 25926 |||||| |||||| ||||||| || || || ||||||||||||||||| || | || Sbjct 2156 CGCAGCATTTCAAGACGGCGCAAATCAAAATCATTCAGTTCGTCGGTGTAATCGTCGGTA 2215 Query 25927 ATTGGCGCTGGCCATTCACCTGTGTCGAATCCGGTTGCGATATTGCGCATCGCTTTGCGG 25986 || || || ||||| ||| ||||| | || |||||| ||| | ||||| Sbjct 2216 ATCGGTGCAGGCCAGATACCGGTGTCATACGCGCGGGCGATAGCTGACATGG---TGCGG 2272 Query 25987 T---ACTCGAGCATACCCAGCTCCAGTAGTTCAGCGGATGCCTCGATGATGGCGATCCAG 26043 | | || ||| ||||| || || | || || ||||| || | || | |||| Sbjct 2273 TGATATTCAAGCGAGCCCAGTTCAAGCAAATCCTGTGACGCCTCAATAACTGCTACCCAG 2332 Query 26044 TGGTAGTTCTCGTCTTTGTTGACGAAAATCCAGAAGAACTGATCCAGCGCTGCGGTTTCG 26103 |||||| ||||||||||||||| ||||| ||||||||||| | | || ||| Sbjct 2333 TGGTAGCCAGGGTCTTTGTTGACGAAGATCCAAAAGAACTGATCGAAGCCAGCAACCTCG 2392 Query 26104 CAGTACATAGCCGCGCTCAGGTGATAATCACGTTCAATAATTTCCCGGTGTAGCCTGGCG 26163 | ||||| |||||||| ||||| ||||| ||||| | ||||| ||||| || | |||| Sbjct 2393 GAATACATCGCCGCGCTGAGGTGGTAATCGCGTTCTGTGATTTCGCGGTGCAGGCGGGCG 2452 Query 26164 CGCAGGCTTTCCTGCTTAACATTCCACATGCTGATGGTTTTCAGGTCAGCACCGATACGC 26223 || | | |||||||||| | ||||||| ||||||||||||||||| | || || Sbjct 2453 CGTAAGTAGTCCTGCTTAATGCGGCCCATGCTGGTGGTTTTCAGGTCAGCAGCAATGCGT 2512 Query 26224 ACGCCGTCTAGGTCGATCTCAAGGTCAGGGCGCACACGAACTTCCAGTCCCGTCTCCTCG 26283 | |||||| | || | |||| || || || || || || || | || ||||| || Sbjct 2513 ATGCCGTCGATTTCCAGTTCAATATCTGGACGTACGCGCACCTCTAAACCGGTCTCGTCA 2572 Query 26284 TCAAAGCCAAAGTAGCTCACCTCAACGGCGCGGCTCGGGTGGGTTAGCAGCATGCCTGCG 26343 || | ||| ||||| |||||||| | || ||||||| | ||||| || | || Sbjct 2573 TCCATGCCGAAGTAACTCACCTCGTTAACACGTGACGGGTGGTTAAGCAGGTTGGATACG 2632 Query 26344 GTCGGGTGCG 26353 | |||||||| Sbjct 2633 GACGGGTGCG 2642 >seq57448 Length=845 Score = 122 bits (134), Expect = 3e-23 Identities = 305/458 (67%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 16181 GAGGTCATTGACGCCAAACTGCGTTATCCAAACACCGCGCTGTTGTACATCGAATTCGAC 16240 ||||| || ||| ||| ||||| ||||| || ||||||||| | || || || | ||| Sbjct 243 GAGGTGATAGACAGCAAGCTGCGCTATCCGAATACCGCGCTGCTCTATATTGAGGTAGAC 302 Query 16241 TCAAGCCAGTTTAACGGCTCTATC-CCGCAAATATCCTGCGAACCGCGAGGGCGTGTAAT 16299 | || |||||||| || || | || |||| ||||| |||| ||| | | Sbjct 303 GCCAGTCAGTTTAATGG-TCAGGCACCTAAAATTACCTGCAAACCAAAAGGTAAGCTGGT 361 Query 16300 CCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTATAGCGGCACATGGACGGGGGC 16359 ||||| || || |||||||||| | |||| ||||| ||| ||||| ||| | Sbjct 362 GCGCGTGCCTACGACCTATGACCCGGTAAGTCGCAGCTATAACGGTTCATGGCAGGGTGA 421 Query 16360 GTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAGCGA 16419 || || | || | || | || || || |||||||||||||||||||| || | | Sbjct 422 TTTCAAATACGCCTATACCAACAACCC-GCATGGATTTTTTACGATCTGGTTCTGGACAA 480 Query 16420 CCGCTTTGGGCTGGGCAATCGCCTGACG--GCGGCCAATATTGATAAATGGACGCTTTAC 16477 | ||| |||| | || || || || ||| |||||||| ||| || ||| Sbjct 481 GATTTATGGTATGGGAACCCG--TGTCGATGCATCCATGATTGATAAGTGGGAACTATAC 538 Query 16478 CAGGTCGCGCAATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGGTAGCGGCACTGAG 16537 | || || ||||| |||||||| || || |||| |||||||| || || Sbjct 539 GCCATTGCCCAGTATTGTGATCAGCCCGTGCCGAATGGCGCAGGCGGTACCG------AG 592 Query 16538 CCTCGCTATACCTGCAACGTGTATGTGCAGGAGAGGAATGACGCCTATACCGTGTTACGA 16597 || || | |||||||||||| | | ||| | | | |||||||| ||||| | Sbjct 593 CCACGATTTACCTGCAACGTTTTCATTCAGAACCAGCAGGACGCCTACACCGTTCTCAAG 652 Query 16598 GATTTTGCGGCGATATTCCGGGGCATGACTTACTGGGG 16635 || |||| || || ||||| || || |||| |||||| Sbjct 653 GACATTGCCGCCATCTTCCGTGGAATTACTTTCTGGGG 690 >seq70398 Length=531 Score = 109 bits (120), Expect = 2e-19 Identities = 262/384 (68%), Gaps = 18/384 (5%) Strand=Plus/Minus Query 16181 GAGGTCATTGACGCCAAACTGCGTTATCCA-AACACCGC-GCTGTTGTACATCGAATTCG 16238 || ||||||||| || ||||| || || || ||||| |||| | || || ||| | | Sbjct 451 GAAGTCATTGACAGTAA-CTGCGCTAGCCCTAATACCGCAGCTGCTTTATATTGAAGTGG 393 Query 16239 ACTCAAGCCAGTTTAACGGCTCTATCCCGCAAATATCCTGCGAACCGCGAGGGCGTGTAA 16298 |||| |||||||| ||||| | ||| || | ||||| | || ||| | Sbjct 392 ACTCCAGCCAGTTCAACGGG-CAGGCCCCAAAGTCACCTGCAAGCCAAAAGGCAAACTGG 334 Query 16299 TCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTATAGCGGCACATGGACGGGGG 16358 | ||||| || ||| |||||||||| | ||| | ||||| |||||||||| | || | Sbjct 333 TACGCGTCCCAACTACCTATGACCCGGTCAGCCGAAGCTATAACGGCACATGGTCAGGTG 274 Query 16359 CGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAGCG 16418 ||||||| || | || | ||||| || ||| | |||||||||||||| || | Sbjct 273 ATTTTAAGTACGCCTACACCAACAATCCGGCATGGGTCTTTTACGATCTGGTTCTG---G 217 Query 16419 ACCG---CTTTGGGCTGGGCAATCG-CCTGACGGCGGCCAATATTGATAAATGGACGCTT 16474 || | | ||| |||| | || |||| || ||| ||||| || ||| ||| Sbjct 216 ACAGAATTTATGGCATGGGAACGCGTGTTGAC-GCTTCCATGATTGACAAGTGGGAGCTG 158 Query 16475 TACCAGGTCGCGCAATATTGCGATCAGCCGGT-TCCTGATGGTAAAGGCGGTAGCGGCAC 16533 ||| |||||||||| ||| ||||||| || || ||||| || | |||| || Sbjct 157 TACAGCATCGCGCAATACTGCAATCAGCCTGTCGCCAAATGGT----GC-CTGGCGGTAC 103 Query 16534 TGAGCCTCGCTATACCTGCAACGT 16557 |||||| || | |||||| ||||| Sbjct 102 TGAGCCGCGATTTACCTGTAACGT 79 >seq46473 Length=412 Score = 107 bits (118), Expect = 6e-19 Identities = 242/353 (69%), Gaps = 13/353 (4%) Strand=Plus/Minus Query 16181 GAGGTCATTGACGCCAAACTGCGTTATCCA-AACACCGC-GCTGTTGTACATCGAATTCG 16238 || ||||||||| || ||||| || || || ||||| |||| | || || ||| | | Sbjct 351 GAAGTCATTGACAGTAA-CTGCGCTAGCCCTAATACCGCAGCTGCTTTATATTGAAGTGG 293 Query 16239 ACTCAAGCCAGTTT-AACGGCTCTATCCCGCAAATATCCTGCGAACCGCGAGGGCGTGTA 16297 |||| |||||||| ||||| | ||| || | ||||| | || ||| | Sbjct 292 ACTCCAGCCAGTTCGAACGGG-CAGGCCCCAAAGTCACCTGCAAGCCAAAAGGCAAACTG 234 Query 16298 ATCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTATAGCGGCACATGGACGGGG 16357 | ||||| || ||| |||||||| | | ||||| ||||| |||||||||| | || Sbjct 233 GTACGCGTCCCAACTACCTATGACCCCGTCAGCCGCAGCTATAACGGCACATGGTCAGGT 174 Query 16358 GCGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAGC 16417 | ||||||| || | || | ||||| || ||| | |||||||||||||| || Sbjct 173 GATTTTAAGTACGCCTACACCAACAATCCGGCATGGGTCTTTTACGATCTGGTTCTG--- 117 Query 16418 GACCG--CTTTGGGCTGGGCAATCGCCTGACG--GCGGCCAATATTGATAAATGGACGCT 16473 ||| | || ||| || || ||| || | || ||| ||||| || ||| ||| Sbjct 116 GACAGAATTTATGGCATGGGAA-CGCGTGTTGATGCTTCCATGATTGACAAGTGGGAGCT 58 Query 16474 TTACCAGGTCGCGCAATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGGTA 16526 ||| |||||||||| ||||||||||| || || |||||| ||||||| Sbjct 57 GTACAGCATCGCGCAATACTGCGATCAGCCTGTGCCAGATGGTGCTGGCGGTA 5 >seq58927 Length=254 Score = 93.3 bits (102), Expect = 1e-14 Identities = 118/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 26020 GATGCCTCGATGATGGCGATCCAGTGGTAGTTCTCGTCTTTGTTGACGAAAATCCAGAAG 26079 || ||||| || | || | |||||||||| ||||||||||||||| ||||| ||| Sbjct 75 GACGCCTCAATAACCGCTACCCAGTGGTAGCCAGGGTCTTTGTTGACGAAGATCCAAAAG 134 Query 26080 AACTGATCCAGCGCTGCGGTTTCGCAGTACATAGCCGCGCTCAGGTGATAATCACGTTCA 26139 |||||||| | | || ||| | ||||| |||||||| ||||| ||||| |||| Sbjct 135 AACTGATCGAAGCCAGCAACCTCGGAATACATCGCCGCGCTGAGGTGGTAATCGCGTT-T 193 Query 26140 ATAATTTCCCGGTGTAGCCTGGCGCGCAGGCTTTCCTGCTT 26180 | ||||| ||||| || | ||||| | | |||||||| Sbjct 194 GTGATTTCACGGTGCAGGCGTGCGCGTAAGTAGTCCTGCTT 234 >seq37294 Length=1674 Score = 87.8 bits (96), Expect = 5e-13 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 27004 ATGGTTTTCTCAACGTGGCGCGCATTGAAGTACATCAGCGAAACGCGCGCATCTTTTACC 27063 |||||||| ||||||||||| | | ||| |||||||| | || |||||||| ||| Sbjct 83 ATGGTTTTTTCAACGTGGCGGCCGTGGAAATACATCAGGCTGATCCGGGCATCTTTAACC 142 Query 27064 TGGGTGGAACTGATGCCGTTGGCAGCGTGGTAAACCTCGTTCGGCAGACCTTCATAGCGC 27123 | || ||||| ||| |||| |||||||| ||||||| || | | |||||| || Sbjct 143 ATGCTGCTGCTGATACCGCTGGCGGCGTGGTATGCCTCGTTTGGAATATTTTCATAACGG 202 Query 27124 CCAGGCTCGAA 27134 |||||||| || Sbjct 203 CCAGGCTCAAA 213 >seq93648 Length=577 Score = 80.6 bits (88), Expect = 8e-11 Identities = 159/233 (68%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 16179 CAGAGGTCATTGACGCCAAACTGCGTTATCCAAACACCGCGCTGTTGTACATCGAATTCG 16238 |||||||||| ||| |||||| || ||||| |||||||| | | || |||||| | Sbjct 253 CAGAGGTCATCGACAGCAAACTTCGCTATCCCAACACCGCCTTACTCTATATCGAAGCCA 194 Query 16239 ACTCAAGCCAGTTTAACGGCTCTATC-CCGCAAATATCCTGCGAACCGCGAGGGCGTGTA 16297 || | ||||| ||||| || | ||| |||| |||| | || ||| | Sbjct 193 ACGCGCAGCAGTTCAACGG-TCAGGCTCCGAAAATCACCTGTAAGCCTAAAGGCAAGCTG 135 Query 16298 ATCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTATAGCGGCACATGGACGGGG 16357 | |||||||| ||||||||||||| | |||||| || ||||| | ||| | || Sbjct 134 GTGCGCGTTCCTACCACGTATGACCCGGTAAGCCGCACTTACAGCGGTAGCTGGTCCGGC 75 Query 16358 GCGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGT 16410 | || || | || | || | ||||| || ||| | |||||||||||||| Sbjct 74 GATTTCAAATACGCCTACACCAACAATCCGGCATGGGTCTTTTACGATCTGGT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144825162940800