Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq84058 416 7e-112 seq93587 370 3e-98 seq70443 289 7e-74 seq49821 262 1e-65 seq57448 149 2e-31 seq82903 138 3e-28 seq74500 136 1e-27 seq83242 104 6e-18 seq52587 82.4 2e-11 >seq84058 Length=491 Score = 416 bits (460), Expect = 7e-112 Identities = 391/493 (79%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 4646 TGCTGAACGGCGACGGTACCGGGGAT-AACCTGGAAGGGCTGAACAAAGTGGCAACCGCC 4704 |||||||||| ||||| | || || ||||| ||||| || ||| ||||| || | Sbjct 490 TGCTGAACGGAGACGGCAAAGGCGACGAACCTTGAAGGTCT-AACGCGGTGGCCACACCG 432 Query 4705 TATGACACCTCGCTGAATGCCACCGGCGACACCCGCGCTGACATTATCGCTCACGCTATT 4764 |||||| | || ||||||||| |||| || || || |||||||| || ||||| || || Sbjct 431 TATGACGCTTCTCTGAATGCCTCCGGGGATACGCGTGCTGACATCATTGCTCATGCGATC 372 Query 4765 TATCAGGTGACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTCCTGAACCCGCGCGACTGG 4824 || ||||| || |||||||| |||||||| |||||||| |||| || || ||||||||| Sbjct 371 TACCAGGTCACTGAGTCTGAATTCAGCGCGTCCGGTATTATCCTTAATCCTCGCGACTGG 312 Query 4825 CACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATCTTCGGTGGTCCTCAGGCA 4884 |||| |||||| |||| |||||| ||| || || |||||||| || ||||| ||||| Sbjct 311 CACAGCATCGCACTGCTTAAAGACCGTGATGGTCGTTATATCTTTGGCGGTCCGCAGGCG 252 Query 4885 TTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACTAAGGCGCAGGCCGCCGGC 4944 |||||||| |||| |||||||||| |||| || || || || | |||||| |||| Sbjct 251 TTCACCAGCAACAACATGTGGGGCCTGCCTGTTGTGCCTACGCGTTCACAGGCCAGCGGC 192 Query 4945 ACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGGGATCGCATGGATGCCACC 5004 || ||||| || || ||||| || |||||||| ||||||||||| ||||||||||| || Sbjct 191 ACATTTACTGTTGGTGGTTTTGACATGGCCTCTCAGGTCTGGGACCGCATGGATGCAACG 132 Query 5005 GTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAACATGCTGACCATCCTGTGC 5064 || || || ||||| |||||||| || ||||| || ||||| |||||||| |||||||| Sbjct 131 GTTGAGGTCAGCCGCGAAGACCGGGACAACTTTGTCAAAAA-ATGCTGACAATCCTGTGT 73 Query 5065 GAAGAGCGTCTGGCGCTGGCGCATTATCGCCCGACAGCAATCATCAAGGGCACCTTCTCT 5124 || |||||||| || ||||| || |||||||| |||||||||||||| ||| | || || Sbjct 72 GAGGAGCGTCTTGCTCTGGCTCACTATCGCCCTACAGCAATCATCAA-GGCTCTTTTGCT 14 Query 5125 TCTGGCTCATGAT 5137 || ||||| |||| Sbjct 13 TCAGGCTCCTGAT 1 >seq93587 Length=445 Score = 370 bits (410), Expect = 3e-98 Identities = 341/430 (79%), Gaps = 1/430 (0%) Strand=Plus/Minus Query 1831 GTGAATGCGGTGGTGGTGAAAGATGCTGCTGGCAACCGCAAGCTCGATAAATCCAAAGCA 1890 || ||||| ||| | || ||||| || || |||||| | ||||| || |||||||||||| Sbjct 445 GTTAATGCCGTGATCGTCAAAGACGCAGCGGGCAACAGAAAGCTGGACAAATCCAAAGCA 386 Query 1891 ACGGGCCGTATTGATGGCATGGTCGCAATGACAATGTCCGTTGGTGCTGCTAATGGGGAA 1950 || ||||| ||||| || |||||||||||||| ||||| |||| || ||||| ||||| Sbjct 385 ACAGGCCGCATTGACGGTATGGTCGCAATGACCATGTCTATTGGCGCGGCTAACGGGGAG 326 Query 1951 GTTACCGAACAGGGTGGTGACTTCGACGACTTCATTTTCCGACCGCTGAGCATGTGATGG 2010 || || |||||||||||||| || |||||||||||| |||||||||||||||||||| Sbjct 325 GTCACTTTGCAGGGTGGTGACTTTGAAGACTTCATTTTCAGACCGCTGAGCATGTGATGG 266 Query 2011 AAGAACCTAAATACACGATTGACCTGCGAACCAATAACGGCTGGTGGGCAAGGCTGCAGT 2070 ||||||| |||| || ||||| || || ||||||||||| |||||||| ||| |||| Sbjct 265 AAGAACC-GAATATACAATTGATCTACGGACCAATAACGGTCTGTGGGCAAAGCTTCAGT 207 Query 2071 CCTGGTTTGTCGGCGGGCGTTTAGTCACCCCAAATCAGGGCTCACAGACGGGGCCTGTTT 2130 | ||||| ||||||||||| ||||| || || ||||||||||| ||| | || || || | Sbjct 206 CATGGTTCGTCGGCGGGCGCTTAGTTACGCCTAATCAGGGCTCGCAGTCCGGTCCGGTGT 147 Query 2131 CGGCCCACGGACACCTGGGCGATTCATCCATTAACGATGAACGGATACTGCAAATTTCGA 2190 | || ||| ||||| ||||| || | | ||||| ||||| || | || || |||| Sbjct 146 CTGCATCCGGGCACCTTGGCGACTCCGCAGTCAACGACGAACGAATTTTACAGATATCGA 87 Query 2191 CTGTGTGGCGCTGCGTGAGCCTGATTTCAACGCTCACGGCATGCTTACCGCTTGATGTCT 2250 | || ||||| || ||||| |||||||||||||| || |||| | || |||||||| | Sbjct 86 CGGTCTGGCGTTGTGTGAGTCTGATTTCAACGCTGACATCATGTCTGCCACTTGATGTGT 27 Query 2251 TCGAAACAGA 2260 |||| || || Sbjct 26 TCGAGACGGA 17 >seq70443 Length=468 Score = 289 bits (320), Expect = 7e-74 Identities = 318/421 (76%), Gaps = 4/421 (1%) Strand=Plus/Plus Query 25940 GCTATTTCATGGTCAGACTCAATTTGCTTTGCGAGAGCTTCAGCTGC--TGCCTTAGCTT 25997 || |||||||| || || || |||||| || || ||||| || ||| |||| Sbjct 1 GCAATTTCATGATCTGATTCGATTTGCGCCGCCAGCTTCTCAGCAGCAATGCGC--GCTT 58 Query 25998 CTTCTTCGGCTTTAATCCGCGCCTGTTCTTCCTCATAATCAGTAAGAGGCTGGCGCGCCT 26057 | ||||| || || || || |||| || |||| | || || | ||||| || |||| Sbjct 59 CCTCTTCAGCCTTGATGCGTTCCTGCTCCGCCTCCCAGTCCGTTACTGGCTGACGGGCCT 118 Query 26058 TGGCTTTCAGTTCATCAAGGCGATCACGCACTGTCTTGCGGTTGGCATCAATTAGCTTTG 26117 | | ||| |||| || || ||||| ||||||||||||||||| || |||||||| | Sbjct 119 TATCGCGCAGCACATCCAGTCGGTCACGTACTGTCTTGCGGTTGGCGTCGATTAGCTTCG 178 Query 26118 GAATTTCCTTCAGTTCAGCAACAAGGTCTTTGCCAAGACCATCGAGATATGTTTTCGTCT 26177 | | || |||||||| ||||| | || || || | |||||| || || | |||||||| Sbjct 179 GCACCTCTTTCAGTTCGGCAACCAAATCCTTACCCAAACCATCCAGGTAAGATTTCGTCT 238 Query 26178 GCGCAACTTTATACGCCAGAGAAGCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAG 26237 | | || || ||||| ||||||||||||||||||||||| ||||| |||| ||| | Sbjct 239 GTGATACACGGTAGGCCAGTGAAGCGATCTCCTTTCTGCCCTTCGCCGTGGTGACATCCG 298 Query 26238 GCACAAAGGACATAACTTCACGTTCAACCTTTTGAAGGATTTCTTCAATCTGGTCTGCAG 26297 |||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||| Sbjct 299 GCACAAAGGACATAACTTCACGCTCGACCTTCTGAAGAATTTCTTCAATCTGGTCAGCAG 358 Query 26298 ACTGAAATACAGTCATTGCATTTGCTTTTTCAATAACAACTAAATCTGTTACTTCACTCA 26357 ||| ||| || || | ||||| || || ||||| || || ||||| ||| ||| |||| Sbjct 359 ACTTAAAAACGGTGAGGGCATTAGCCTTCTCAATGACTACCAAATCCGTTGATTCGCTCA 418 Query 26358 T 26358 | Sbjct 419 T 419 >seq49821 Length=2150 Score = 262 bits (290), Expect = 1e-65 Identities = 462/660 (70%), Gaps = 26/660 (4%) Strand=Plus/Minus Query 24230 TGCCATTAAGCAGCCGCTCCTTCTAATTCG--TCTCGTCTGATGTTGTAAACGTCCTGCG 24287 |||||||| || | |||||||| | || | || || |||| || || |||| || Sbjct 1986 TGCCATTATGCGGTAGCTCCTTCAAGCTCTGATTTCTTC--ATGTCATAGACTTCCTTCG 1929 Query 24288 CTTTGTGCTGCTCCGGTGTGCCTTCGAGCATCTTCCACGCTTTGGCGAACGCCTGTTTAA 24347 |||| ||||||||| || || || ||||||| ||| |||||||| || | ||| || | Sbjct 1928 CTTTAGCCTGCTCCGGAGTTCCGTCAAGCATCTGCCATGCTTTGGCAAATGACTGCTTGA 1869 Query 24348 GCTCTTCTACGGTGTTTTTCTGCATTGCTGCGTCAGTGAATGCTTTTAGAACCTGTTCAG 24407 | ||||| || | || | | || || |||| ||| || |||| ||| | Sbjct 1868 GATCTTCAGGATTGGTCTTATTAAGCGCAGCCTCAGAGAAGGCAGCGAGAA--TGTC--G 1813 Query 24408 GTGTAGGTGATGGTTTTGA-TTGCTTTGCT-----GCTGCGTTCTGCTGATGTTTATGCT 24461 | | ||| |||||||| ||||| || |||| ||||||| || ||||| Sbjct 1812 GCG--GGTTTTGGTTTTGGCTTGCTCTGTGCGGGCGCTGATGTCTGCTGCTGGCGATGCT 1755 Query 24462 CGTCTGTATCTGCATCTTTCGCATCATCAATGCCGAATAAACCATTGAGGCAATACTTGC 24521 ||| || || ||||| || | ||||||||||| || || || || ||||| ||||||| Sbjct 1754 CGTTGGTGTCCGCATCCTTTGAGTCATCAATGCCAAACAATCCGTTAAGGCAGTACTTGC 1695 Query 24522 GTGCATAAGAGCTTGTAGCTCCCGTAACTTGTGCAGAATCCATTCCTTTCTTGCTTTCTT 24581 | ||||| || || || || || ||||| ||||||| ||||| ||||| ||| |||| Sbjct 1694 GGGCATATGAACTGGTTGCGCCTGTAACCTGTGCAGCGTCCATGCCTTTTTTG-ACTCTT 1636 Query 24582 CCTCTCGTGCAAGAGCGGTTGCCGTATGACTGTTTTCGCCATCGGTAATAGTTGCCGTGG 24641 |||| || || | || || || ||| | | |||||||| || || | ||| || | Sbjct 1635 CCTCACGCGCCATTGCTGTAGCGACGTGAGTTGTCTCGCCATCAGTTATTGATGCAGTTG 1576 Query 24642 CTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTGATTGATAAAAACAGGC 24701 | ||||||||| |||||||| | || | ||||| ||||| | |||||| | Sbjct 1575 CCCGCACGTAATAGCGATCACCTACTGGAACTATCTCATCAGAAATTGAAAGAAACAGTC 1516 Query 24702 CATTCAGTAACGGCTTAACACCCTCAAGAATGTCTTCGCAGCTTCTGTATTTATATTTGC 24761 | || || | ||||| || ||||||||||||||||| ||||| | ||||| || |||| Sbjct 1515 CGTTGAGGAGTGGCTTTACTCCCTCAAGAATGTCTTCACAGCTGCGATATTTGTACTTGC 1456 Query 24762 CGAATGAGTTATATTGATTCTTTGGCGCGTTCAGATTCTCCTG-AATAGCTGCCAGTCTT 24820 || | ||| || |||||||||||||| ||||| || ||| | | | || |||| | Sbjct 1455 CG-AGCTGTTGTACTGATTCTTTGGCGCATTCAGCGTCCGCTGTATTCTCAGCGAGTCGT 1397 Query 24821 GCGTAAAATT-CTTTGCTCA--TATGATTGTTCTCAGAATGGACATGGCCCAAGTAAATA 24877 || || |||| ||||||||| || | ||||||| || |||||||| || ||||| Sbjct 1396 GCATAGAATTCCTTTGCTCACTTACCA----CCTCAGAACGGGCATGGCCCGAGGAAATA 1341 >seq57448 Length=845 Score = 149 bits (164), Expect = 2e-31 Identities = 310/458 (68%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 15072 GAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 15131 |||||||| ||| ||| |||||||| ||||| |||||||||||||| | || | ||| Sbjct 243 GAGGTGATAGACAGCAAGCTGCGCTATCCGAATACCGCGCTGCTCTATATTGAGGTAGAC 302 Query 15132 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 15191 | || ||||| || || ||| ||||| | ||| |||| || | | Sbjct 303 GCCAGTCAGTTTAATGGTCAGGCACCTAAAATTACCTGCAAACCAAAAGGTAAGCTGGTG 362 Query 15192 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 15251 ||||| || ||||| ||||| | || |||| |||| |||| ||||| |||| Sbjct 363 CGCGTGCCTACGACCTATGACCCGGTAAGTCGCAGCTATAACGGTTCATGGCAGGGTGAT 422 Query 15252 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 15311 || || | || | || | ||||| || |||||||||||||| |||||| | ||| Sbjct 423 TTCAAATACGCCTATACCAACAACCC-GCATGGATTTTTTACGATCTGGTTCTG---GAC 478 Query 15312 CGG--TTCGGCCTTGGGCACC-GTTTGACCGCTGCGAATATTGATAAATGGACGCTTTAT 15368 | || | |||| ||| || | || | | |||||||| ||| || || Sbjct 479 AAGATTTATGGTATGGGAACCCGTGTCGATGCATCCATGATTGATAAGTGGGAACTATAC 538 Query 15369 CAGGTTGCTCAGTATTGTGATCAGATGGTGCCAGACGGCAAAGGGGGCAACGGTACAGAA 15428 |||| ||||||||||||||| ||||| | ||| ||| |||||| || Sbjct 539 GCCATTGCCCAGTATTGTGATCAGCCCGTGCCGAATGGCGCAGG------CGGTACCGAG 592 Query 15429 CCACGTTATACCTGCAACGTGTACATCCAGGATCGGAACGACGCCTACACAGTCCTGCGT 15488 ||||| | |||||||||||| | ||| ||| | | | | ||||||||||| || || Sbjct 593 CCACGATTTACCTGCAACGTTTTCATTCAGAACCAGCAGGACGCCTACACCGTTCTCAAG 652 Query 15489 GATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGG 15526 || ||||||| ||||||||||| || || | |||||| Sbjct 653 GACATTGCCGCCATCTTCCGTGGAATTACTTTCTGGGG 690 >seq82903 Length=448 Score = 138 bits (152), Expect = 3e-28 Identities = 223/321 (69%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 32017 CTGTCACTCATCATGGCGGATTATCTTGGCCTGATTGAGAAGCCGAAAGCAGACCGCAAC 32076 ||||| || ||| |||| || ||||| || || || | ||||| ||||| || || Sbjct 417 CTGTCGCTTATCCTGGCTGACTATCTGGGGCTCATCAAAAAGCCATCGGCAGAACGTAAT 358 Query 32077 GACCTCGCAATTGCTCACATCTCAGGAAGCCTGAAGGCGATGGCGAAAGACCTGAAAACG 32136 ||||| || || | | | || || | |||| || | ||||||| || || || ||| Sbjct 357 GACCTGGCGATCGGTGAGATTACACGCGGCCTTAAAACCATGGCGATGGAGCTTAACACG 298 Query 32137 CCTGTTATCTCCCTGAGTCAGCTTTCACGCGATGTTGAGAAGCGACCAAACAAACGCCCG 32196 || ||||||| ||| || ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 297 CCCGTTATCTGCCTCAGCCAGCTGTCGCGCGAAGTTGAAAAGCGCCCGAACAAACGCCCT 238 Query 32197 ACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAGGACGCAGACTCAATCATCATG 32256 ||| || ||| ||||||| || |||||||| |||||||| ||| ||| | Sbjct 237 TTAAATGCCGATCTGCGTGACAGTGGCAGCATTGAGCAGGACGCGGACGGCATCTGGTTC 178 Query 32257 CTCTATCGGGAAGCGGTATATGACGAGAACAGTAGCGCCGCGCCATTTGCTGAAATCATC 32316 | ||||| || | | ||| || |||| ||||||| | ||||||||||| Sbjct 177 ATTTATCGCGATGGTGCCTATAACCCAGACAGCCCGGCCGCGCACCTGGCTGAAATCATT 118 Query 32317 GTGACGAAAAACCGTTTTGGC 32337 | ||||||||| |||| Sbjct 117 ATCGGTAAAAACCGTCATGGC 97 >seq74500 Length=673 Score = 136 bits (150), Expect = 1e-27 Identities = 191/262 (73%), Gaps = 11/262 (4%) Strand=Plus/Minus Query 32149 CTGAGTCAGCTTTCACGCGATGTTGAGAAGCGACCAAACA--AACGC---CCGACAAACG 32203 || || |||||||| || || ||||||||||| |||| ||||| |||||||||| Sbjct 610 CTCAGCCAGCTTTCCCGAGACGTTGAGAAGCGCCCAATGGGCAACGCAGACCGACAAACG 551 Query 32204 CAGATTTGCGTGATTCAGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATC 32263 |||| | || ||||||||| |||||||||||||||| ||| ||||||||||| || | Sbjct 550 CAGACCTCCGCGATTCAGGA-GCATTGAACAGGACGCTGACAGCATCATCATGCTTTACC 492 Query 32264 GGGAAGCGGTATATGACGA-GAACAGTAGC--GCCGCGCCATTTGCTGAAATCATCGTGA 32320 ||||||| | | | |||| ||| | | | || || | ||| ||||||||||| | Sbjct 491 GGGAAGC--TGTTTCACGATGAAGAATCACCTGCGGCTAAGTATGCAGAAATCATCGTCA 434 Query 32321 CGAAAAACCGTTTTGGCTCGCTTGGTACGGTTTACCAGCGGTTCTGTAACGGACACTTTG 32380 | |||||||| || || || || || || | |||| |||| | |||||||| || Sbjct 433 CTAAAAACCGATTCGGACAACTGGGAACAGTATTCCAGGAGTTCCGAAACGGACATTTCA 374 Query 32381 TTGCATGTGACCAGGATGAAGC 32402 || ||||||| | ||||| Sbjct 373 AACCAACTGACCAGCAAGAAGC 352 >seq83242 Length=311 Score = 104 bits (114), Expect = 6e-18 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 3713 CTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATG 3772 ||| ||||||||||| ||||||| | || |||||||| || || | | || | | Sbjct 222 CTGAGCGAAATCAGCATCTGCACCATGCCGGCCAACGAGCACGCCACCGTGGCCTCGCTC 163 Query 3773 AAAAGTGTCGATGGCATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAGTC 3832 || || | || ||||| |||| ||||| |||| |||| |||||||| | ||| ||| Sbjct 162 AAGAGCATGGACGGCATCGAAAGCATTCGCGATGCGGAGCACTGGCTGCGAGATGCAGCT 103 Query 3833 GGCCTCACCAAATCACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGATTCGGAGC 3892 |||||| |||| || |||| | | | || ||||| | ||||| || ||||||| Sbjct 102 GGCCTCTCCAAGTCCGAGGCGCAGGCGTTCATCGCCCGCATCAAGTCCGCAGTTCGGAGT 43 Query 3893 GAGTCCGAGGGC 3904 |||||||| ||| Sbjct 42 GAGTCCGAAGGC 31 >seq52587 Length=1677 Score = 82.4 bits (90), Expect = 2e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 15064 GCTTCACCGAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCG 15123 || ||||||| ||||| |||||||| |||||||| || ||||| |||||||||||||||| Sbjct 1333 GCATCACCGAAGTGATCGACGCCAAGCTGCGCTATCCCAACACGGCGCTGCTCTACGTCG 1392 Query 15124 AATTC 15128 | ||| Sbjct 1393 AGTTC 1397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128175764686200