Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq49234 131 2e-25 seq49372 111 2e-19 seq50823 109 6e-19 seq62284 105 7e-18 >seq49234 Length=879 Score = 131 bits (144), Expect = 2e-25 Identities = 133/171 (78%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 66302 TAAAAATTCTAATTTGTCATAGAAAAATGTGACATGACCTGTTCCTAAAATAAAGACATG 66361 |||| || |||||| | |||||||| ||| ||||||||||| |||||| | || | Sbjct 351 TAAATATAATAATTTATTATAGAAAA-TGTAACATGACCTGTACCTAAA-TGTAGGTAGT 408 Query 66362 AGAAATTTTAAAGTCTTTAAGTTTTTTACCATTTTGGACATGTTTACGCACTGCACCAAA 66421 | |||||||| || || | | ||||||| ||| || || ||||| || ||||| || Sbjct 409 ACTGATTTTAAAATCATTGATTCGTTTACCAGCTTGTACGTGCTTACGAACAGCACCGAA 468 Query 66422 GACTCGCGGCAATTCCCGATATTCAGCCATAAGATGTTGGTCGGCTAATTC 66472 || || |||||||| || ||||||||||||||||||||||| |||||||| Sbjct 469 TACACGTGGCAATTCACGGTATTCAGCCATAAGATGTTGGTCAGCTAATTC 519 >seq49372 Length=1062 Score = 111 bits (122), Expect = 2e-19 Identities = 252/378 (67%), Gaps = 16/378 (4%) Strand=Plus/Plus Query 68216 GTTTAGTTTAAATCGCTTAACATAATCATTAGGGCCTAGTTTTTTGTACATAGCCATAAC 68275 |||| ||| || || |||| |||||||| ||| | ||| |||||| |||| Sbjct 279 GTTTTCTTTGAAACGTTTAATATAATCATCTTCGCCAAATTTACGATACATAT---TAAC 335 Query 68276 AACAAAAT---AATTTTCCCAGGCAAATTCTCGGAACCAGCCTGTTGTAATACTTGTGCA 68332 || || |||| ||||| | |||||||| ||||| |||| |||||||| | || Sbjct 336 TACTGTATTAAAATTCTCCCAAGAAAATTCTCTAAACCATCCTGACGTAATACTACTACA 395 Query 68333 CACTTTTTCAAGAGCCATTTTAAAGCTTAACTCTGA-----ACCAGGTTTAAAGTTATTA 68387 |||||| | | ||| | |||| ||||||| | || || ||| |||||| Sbjct 396 CACTTTAACTAAAGCAGTAATAAA-----ACTCTGACGAGGATCAATTTCAAAATTATTA 450 Query 68388 GGAATCTGCGAACGCTCTAAAGCTAATACACATGCTTCTTCATATACGCCAGCTAACTGA 68447 || || || ||||| ||||| || | ||||||| |||||||||||| || ||| | | Sbjct 451 GGGATTTGTGAACGTTCTAATGCAAGAACACATGTTTCTTCATATACACCCAATAATTTA 510 Query 68448 ATTTCTTTAGGTAGAGCCATGAACTTCTCTTTAGAAGTCATTACTTGAGAATCATCTTTC 68507 | ||| | | || | |||||| |||||| ||||| || | | | | || Sbjct 511 ACTTCATCGCTCTGTGCAAAGAACTTTTCTTTACTTGTCATAACGTCTGCACCTTCCACA 570 Query 68508 ATGTAATATTTGTATGCTGGCTGATCAATTAATGCAATAGCTTCATGAATTGTATCATGG 68567 || || | | ||||| || | |||| || | || ||||| ||||| ||||||||| Sbjct 571 ATATAGTTCATATATGCAGGTTTGTCAAGTACTTTTATCGCTTCGTGAATAGTATCATGG 630 Query 68568 TCGTATGTATAGATATCA 68585 || || | ||| || || Sbjct 631 TCATAAATGTAGTTAACA 648 >seq50823 Length=3276 Score = 109 bits (120), Expect = 6e-19 Identities = 116/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 66321 TAGAAAAATGTGACATGACCTGTTCCTAAAATAAAGACATGAGAAATTTTAAAGTCTTTA 66380 || ||||| || ||||| |||||||| | |||| || | | |||||||| || ||| Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 66381 AGTTTTTTACCATTTTGGACATGTTTACGCACTGCACCAAAGACTCGCGGCAATTCCCGA 66440 | | |||| ||| | || ||||| | ||||||||||| || || || ||||| ||| Sbjct 188 A-TATTTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 66441 TATTCAGCCATAAGATGTTGGTCGGCTAATTC 66472 ||||||||||| |||||||| ||||| ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTC 278 >seq62284 Length=976 Score = 105 bits (116), Expect = 7e-18 Identities = 273/407 (67%), Gaps = 18/407 (4%) Strand=Plus/Plus Query 146562 GTTAATTTGAACACCATAATCTAGGTGGCGAATACG---GTTTTCATCAACACCTTTATT 146618 |||||| |||| || |||||||| || | | ||| | |||| | |||||||| Sbjct 87 GTTAATCTGAAAACAATAATCTAACTGTCTTACACGTGAGGTTTCTGTA---CCTTTATT 143 Query 146619 GTTCTTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGC 146678 || |||||||| | || | ||| | || |||||| | ||| | | | ||| || Sbjct 144 ATT-TTCAGTACTACAAGATCTTCAAACTCGTAATGCCATAGTGGAAAGTGTACAGTTGC 202 Query 146679 TGCACCGCCACGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGTTTTCC- 146737 ||| || || |||| || || |||||||| |||| ||||| | || | || Sbjct 203 TGCTCCACCTCGAACACCACCCTGAGAACAGGATT-AACAG----TTTTTGCCACTGCCG 257 Query 146738 --AGAA-TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAG 146794 |||| |||||| | |||||| || | |||||| | | ||| | |||||| | | Sbjct 258 ACAGAAATGGAATCAAGCCTGTGTGGACTGCATCACCACCACGAATTTCTGAACCTACTG 317 Query 146795 CACGATACATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTG 146854 ||||| ||| ||| ||||| | || || || |||||||| ||||||| Sbjct 318 CACGAACGCGACCATAATTTACACCTAGTCCAGCTTTCTTAGAAATATATTTCATGATTG 377 Query 146855 CTTTGTTTACTGCGTTAATACTGTCAAGACTATCGCC-ACCTTCAATAACAACGCAAGAA 146913 | || | || |||||||||| || || || || || |||| || |||| |||||| Sbjct 378 CAGAATTACCAGCACTAATACTGTCTAGGCTGTCTCCTACATTCATTA-CAACACAAGAA 436 Query 146914 CTGAACTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGG 146960 ||||| || ||||| ||||||| ||| |||||||| || || || Sbjct 437 CTGAATTGACGAGTATTTGTACGTAAACCAGCCATAATAGGTGTTGG 483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539181175972000