Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq16638 113 2e-20 seq40890 109 2e-19 seq26088 102 3e-17 seq69341 82.4 3e-11 >seq16638 Length=4153 Score = 113 bits (124), Expect = 2e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 9846 ACCGAGTGGCACCGCGTCGCCTTCTTCGGCCGCCTCGCCGAGATCGTCGACGAGCACCTG 9905 ||||| ||||||||||| | |||||||| || ||||||||||||| || |||| || | Sbjct 4116 ACCGAATGGCACCGCGTGGTGTTCTTCGGTCGTCTCGCCGAGATCGCCGGCGAGTACATC 4057 Query 9906 CGCAAGGGCGCATCGGTCTACATCGAGGGGCGCATCAAAACGCGGAAGTGGCAGGATCAA 9965 ||||||||| | |||||| ||||||| | || || || ||||||| || Sbjct 4056 CGCAAGGGCTCCCAGGTCTATGTCGAGGGCACTCTGCGTACCCGCAAATGGCAGGGCCAG 3997 Query 9966 TCCGGCCAGGATCGCTACACGACCGAGATCGTCGCCGACA 10005 ||| |||||||||||||| ||||| ||||| | ||||| Sbjct 3996 GACGGTCAGGATCGCTACACCACCGAAATCGTGGTCGACA 3957 >seq40890 Length=365 Score = 109 bits (120), Expect = 2e-19 Identities = 165/230 (72%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 9706 TCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCCGA 9765 ||||||||||||||||||||||||| ||||| ||| || || ||| || || | Sbjct 238 TCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGG 179 Query 9766 GCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTA-CAAGGACAAAGCC 9824 |||| || ||| || ||| |||| || || ||| | ||| |||||| || Sbjct 178 CCGGCATGGCCATCACCCGGATCAGCCTGGCCACCACC-AGCGTGCGCAAGGATC--GCG 122 Query 9825 AGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTCGGCCGCCTCGCC 9884 | |||| || | ||| ||||||||||||||||||| |||||||| || | | Sbjct 121 A-CGGCAACCAGCAGGAACGCACCGAGTGGCACCGCGTCGTGTTCTTCGGAAAGCTTGGC 63 Query 9885 GAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGG 9934 ||||||| || |||| |||||||||| ||| ||||||||| |||| || Sbjct 62 GAGATCGCCGGCGAGTACCTGCGCAAAGGCAGCTCGGTCTACGTCGAAGG 13 >seq26088 Length=506 Score = 102 bits (112), Expect = 3e-17 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 3102 GAGCTCGAAAAGCTGATGGTCTACTTCTACGACATGGCGCGCCGGCGGAAGTGGGCGACG 3161 ||||| || |||||||| | |||| ||| ||| ||| || ||| | | ||| Sbjct 324 GAGCTGGACCTGCTGATGGAGCATTTCTTCGAGATGCAGCGGCGCCGGCCGGCGTCGATC 383 Query 3162 CCGATGGTCAAGATCATCGCGTTCGCGATCTTCGCGACGCGGCGCCAGGAGGAGATCACG 3221 ||| |||| | ||||| ||||| |||||| | || || |||||||||||||||||| Sbjct 384 AACATGCCCAAGGTGATCGCTTTCGCCATCTTCTCCACCCGCCGCCAGGAGGAGATCACG 443 Query 3222 GCGATCCGCTGGGACGACCTGAACGAGGAGGAGAGCA--CGCAGCTCGTGCGCGACGTGA 3279 ||||||||||||||||||| |||| | | ||| || ||| ||||||||| ||| Sbjct 444 CGGATCCGCTGGGACGACCTGGACGA--ACGCCGGCAGGCGGTGCTGGTGCGCGACATGA 501 Query 3280 AG 3281 || Sbjct 502 AG 503 >seq69341 Length=1420 Score = 82.4 bits (90), Expect = 3e-11 Identities = 155/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 ||||||||| ||||| ||||||||||||||||| ||||| || | |||| ||| Sbjct 1104 CGTCAACAAGGTCATTCTCGTCGGCAATCTCGGGCGTGACCCCGAGTCGCGCTCGTTCCA 1163 Query 9764 GAGCGGCGACGCAA--TCTCCAACATCCGCCTCGCGACGACCG-ATCGTTACAAGGACAA 9820 || ||||| |||| | ||| | ||| |||||||| | | |||| | |||||| Sbjct 1164 GAACGGCG--GCAAGGTGGTGAACCTGCGCATCGCGACGTCGGAATCG-TGGAAGGACCG 1220 Query 9821 AGCCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCAC-CG--CGTCGCCTTCTTCGGCCG 9877 || |||||| ||| || ||||||||||||| || ||| || | || Sbjct 1221 CAACACCGGCGAGCGCAAGGAGAAGACCGAGTGGCACTCGGTCGTGATCTACAACGAGAA 1280 Query 9878 CCTCGCCGAGATCGTCGACG-AGCACCTGCGCAAGGGCGC 9916 ||||||| | | | ||||| || |||||||||||||||| Sbjct 1281 CCTCGCCCGGGTGGCCGACGCAGTACCTGCGCAAGGGCGC 1320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201001895007900