Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq28361 199 6e-46 seq43510 181 2e-40 seq51075 172 9e-38 seq60516 163 4e-35 seq2347 129 9e-25 seq47791 86.0 1e-11 >seq28361 Length=3781 Score = 199 bits (220), Expect = 6e-46 Identities = 229/301 (76%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACG--GGCACGA-AAAAGCA 122419 |||||||| |||||||||||| |||| |||| | ||| ||| ||||| |||| | Sbjct 2732 ATGAAACAGTATCTGGACTTAATGCGCTACGTGC-TGA--ACGAAGGCACACCAAAATCT 2676 Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 |||||||| || || ||||| || || | || || || ||||| ||| | ||||| Sbjct 2675 GACCGTACCGGTACAGGCACGCTTTCAATTTTTGGTCACCAGATGCGTTTTAATCTGCAG 2616 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | || || || ||||||||||| |||||| || | ||||||||||| |||||||| Sbjct 2615 GATGGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCATGAGCTG 2556 Query 122540 CTGTGGTTCCT-CATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 122598 |||||||| || || ||| || |||||||| || |||||||| ||||| ||| ||| Sbjct 2555 CTGTGGTTTCTGCAAGGG-GACACCAACATTGGTTACCTGAAAGAAAACAATGTCTCTAT 2497 Query 122599 CTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||||||| ||||||||||| | || ||||| || ||||| ||||| || || ||||| Sbjct 2496 CTGGGATGAGTGGGCAGATGAGCAGGGCAATCTGGGACCGGTATACGGCAAACAGTGGCG 2437 Query 122659 T 122659 | Sbjct 2436 T 2436 Score = 147 bits (162), Expect = 3e-30 Identities = 226/320 (71%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 123074 TCCTGTCAGCTGTATCAGCGCAG-TGCTGACATGTTCCTAGGCGTACCGTTTAACATTGC 123132 ||||||||||| || ||||| ||| ||||| ||||| || | ||||||||||| || Sbjct 2255 TCCTGTCAGCTTTACCAGCGTTCCTGC-GACATTTTCCTGGGGCTGCCGTTTAACATCGC 2197 Query 123133 CTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACTT 123192 | || ||||| ||| | || ||| | || || ||| | || ||| || |||||||| Sbjct 2196 CAGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGACTT 2137 Query 123193 CGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTGCA 123252 || ||||| || || ||| ||| || ||| |||||||||||||||||| |||| Sbjct 2136 TGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCTGCA 2077 Query 123253 GTTAACTCGCGAACCTCATCCGTTACCACAACTGCGGATTAAACGTCGTCCGGATTCTAT 123312 | || |||||||| | | ||||||| | ||| ||||||||| || | || | Sbjct 2076 ACTGACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCTCGCT 2017 Query 123313 CTTCGACTATAAGTTTGAAGATTTCGAAGTGGTCGGATACGAATCGCATGACGCTATTAA 123372 || |||||| || || ||||| || | | || ||||| ||||| ||| || || Sbjct 2016 GTTTGACTATCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCATCAA 1957 Query 123373 GGCACCGGTGGCGATATGAA 123392 || ||||| ||| | |||| Sbjct 1956 AGCGCCGGTTGCGGTCTGAA 1937 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 122789 ATCGACCAAATCAGCAAGGTCATGGAACAACTGAAAAACGACCCGGACAACCGCCGTATC 122848 || || || |||| ||| || || ||||| | || ||| ||||| |||||| ||| Sbjct 2408 ATTGATCAGATCACCAAAGTGATTGAACAGATCAAGCGCGATCCGGATTCCCGCCGCATC 2349 Query 122849 ATCGTCAGTGCCTGGAACGTGGCTGACCTGGATGAAATGGCGTTAGCACCATGCCATGCC 122908 || ||| || |||||||||| || ||||||||||||||| | || || ||||||||| Sbjct 2348 ATTGTCTCGGCGTGGAACGTGGGCGAACTGGATGAAATGGCGCTGGCTCCGTGCCATGCC 2289 Query 122909 TTCTTCCAGTTCTAC 122923 || |||||||||||| Sbjct 2288 TTTTTCCAGTTCTAC 2274 >seq43510 Length=3912 Score = 181 bits (200), Expect = 2e-40 Identities = 217/295 (74%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 122364 TGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCAGACC 122423 |||| || || |||||| | |||| |||| | || | || || ||| | |||| Sbjct 1216 TGAAGCAGTACCTGGACCTGCTGCAGCACGTGCTGGAGCATGGCGCGGAGAAATCCGACC 1157 Query 122424 GTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAAAG 122483 | || ||||| ||||| | | |||||| || ||||| || ||||| | | | Sbjct 1156 GCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGTTTCGACCTCAACGACG 1097 Query 122484 GTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCTGT 122543 | ||||| |||||||| ||||| ||| | ||||| ||||| ||| | || ||| | |||| Sbjct 1096 GCTTCCCCCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAGTTGCTGT 1037 Query 122544 GGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGGG 122603 ||||||| | |||||| ||||||||| ||||| || |||||||| ||||| ||||||| Sbjct 1036 GGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCATCTGGG 977 Query 122604 ATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 | || ||||| |||| | || | ||||||||||||||||| ||||| ||||| Sbjct 976 ACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAGTGGCG 922 Score = 100 bits (110), Expect = 4e-16 Identities = 127/172 (74%), Gaps = 7/172 (4%) Strand=Plus/Minus Query 123076 CTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCCTC 123135 ||| |||||||| |||||||| | ||||| ||||| ||||| ||||| ||||| ||| Sbjct 738 CTGCCAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGTTCAACATCGCCAG 679 Query 123136 TTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATA---TGGCAGTAGGTGACTT 123192 |||||||| |||| |||||| | || |||||||| ||| || || || || Sbjct 678 CTACGCGCTGCTGACCCACATGGTGGC---GCAGGCCACCGGCCTGGGCGTGGGCGATTT 622 Query 123193 CGTGTGGACGGGTGGGGATGTGCATCTGTA-CTCCAACCACCTGGAGCAGGC 123243 |||| ||| || |||| ||| ||||| |||||||||| | || ||||| Sbjct 621 CGTGCACACGCTGGGCGATGCGCACCTGTAACTCCAACCACTTCGAACAGGC 570 >seq51075 Length=376 Score = 172 bits (190), Expect = 9e-38 Identities = 167/211 (79%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 122450 TTCGGCGCACAAATGCGCTTTGACCT-GCAAAAAGGTTTCCCGCTGGTCACGACCAAAAA 122508 |||||||| || |||||||| ||||| || || | ||||||| | |||||||||| || Sbjct 54 TTCGGCGCGCAGATGCGCTTCGACCTCGCCGAAGGCTTTCCCG-TCCTCACGACCAAGAA 112 Query 122509 GGTTCACCTCCGCTCCATCATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACAT 122568 | | ||||| ||||| ||| | || ||| | ||||||||||| | |||||| |||||||| Sbjct 113 GCTGCACCTGCGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGCGAGACCAACAT 172 Query 122569 CCAGTATCTGAAAGACAACAACGTCAG-TATCTGGGATGAATGGGCAGATGAAGATGGTA 122627 | ||||| || |||||||| ||||| |||||||| || ||||| |||| | || Sbjct 173 CGCCTATCTCAAGGACAACAAGGTCAGCCATCTGGGACGAGTGGGCCGATGCGCAGGGCG 232 Query 122628 ATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 | ||||||||||||||||| ||||| ||||| Sbjct 233 AACTCGGCCCGGTGTACGGCAAGCAGTGGCG 263 >seq60516 Length=573 Score = 163 bits (180), Expect = 4e-35 Identities = 217/298 (73%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCAGAC 122422 |||||||| || || ||| | |||| | || || || |||| | || | |||| Sbjct 32 ATGAAACAGTACCTCGACCTGATGCGCCATGTGCGCGAGCACGGCACCTTCAAGGAAGAC 91 Query 122423 CGTACGGGCACGGGCACC--CTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAA 122480 ||||| ||||| |||||| | | ||| ||||| || |||||||| ||||| Sbjct 92 CGTACCGGCACCGGCACCTACAG-CGTG-TTCGGTTACCAGATGCGCTTCAACCTGGCCG 149 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 | || ||||| | ||||| ||||| ||| ||||| |||||||||||||| || | Sbjct 150 ATGGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCATGAACTAC 209 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 |||||||||| ||| |||||||| ||| |||| ||||| |||||| |||||| |||| Sbjct 210 TGTGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGTCAGCATCT 269 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 |||| || ||||| || || | || || ||||||||||| ||||| | || ||||| Sbjct 270 GGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTATACGGCTACCAGTGGCG 327 >seq2347 Length=4848 Score = 129 bits (142), Expect = 9e-25 Identities = 214/302 (71%), Gaps = 8/302 (3%) Strand=Plus/Minus Query 122361 CCATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGA--AAAAGC 122418 |||||||||| || || ||| | |||| |||| || || |||| ||| || ||| Sbjct 2125 CCATGAAACAGTACCTCGACCTGATGCGCCACGTGCGCGAACACGG-CACCTTCAAGAGC 2067 Query 122419 AGACCGTACGGGCACGGGCACC--CTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTG 122476 ||||| || ||||| || ||| | | ||| |||||| || ||| | || |||||| Sbjct 2066 -GACCGCACCGGCACCGGGACCTACAG-CGTC-TTCGGCTACCAGATGAGATTCGACCTG 2010 Query 122477 CAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAG 122536 | || || || |||||||| ||||| || || || | ||||||||||| || Sbjct 2009 GCCGAGGGCTTTCCCCTGGTCACCACCAAGAAATGCCATCTGAGATCCATCATCCACGAA 1950 Query 122537 CTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGT 122596 || ||||||||||| |||||| ||||| |||| || ||||| ||||| ||| Sbjct 1949 CTGCTGTGGTTCCTGCAGGGCGAGACCAATATCCGCTACCTGAAGGACAATGGCGTGTCC 1890 Query 122597 ATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGG 122656 |||||||| |||||||| || || | ||| | || || ||||| ||||| | || ||| Sbjct 1889 ATCTGGGACGAATGGGCCGACGAGAACGGTGAGCTGGGACCGGTCTACGGCTACCAGTGG 1830 Query 122657 CG 122658 || Sbjct 1829 CG 1828 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 123076 CTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCCTC 123135 ||| ||||||||||||||| || ||||| ||||| ||||| || || ||||| ||| Sbjct 1644 CTGCCAGCTGTATCAGCGCTCCGCCGACATCTTCCTCGGCGTGCCCTTCAACATCGCCAG 1585 Query 123136 TTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAG-TAGGTGACTTCG 123194 || ||||| |||| | ||| | |||||| || | |||| || || ||| Sbjct 1584 CTATGCGCTGCTGACCCTGATGGTGGCCCAGGTCACCGGGCT-GCAGCCGGGCGAATTCA 1526 Query 123195 TGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTGCAGT 123254 | ||||| || || ||| ||||| || |||| |||||||||||| | ||| ||||| Sbjct 1525 TCTGGACCGGCGGTGATTGCCATCTCTATGCCAATCACCTGGAGCAGACCGATCTGCAGC 1466 Query 123255 TAACTCGCGAACC 123267 | || ||||| || Sbjct 1465 TGACCCGCGAGCC 1453 >seq47791 Length=2831 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 169489 AATATTTGTTCCTGTCGTCTAGTGGTAAGGACACCTGGTTTTCAACCAGGCAACCGGAGT 169548 |||| ||||||| |||||||||||| ||||| |||| ||||| |||| ||||||||| Sbjct 506 AATAATTGTTCCCATCGTCTAGTGGTCAGGACGCCTGCCTTTCACGCAGGAAACCGGAGT 565 Query 169549 TCAATTCTCCGCAGGAACGC 169568 |||| |||||| ||||||| Sbjct 566 TCAAGTCTCCGTGGGAACGC 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 776365431880000