Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_019933.2 Length=43870 Score E Sequences producing significant alignments: (Bits) Value seq36111 120 9e-23 seq38026 111 4e-20 >seq36111 Length=5564 Score = 120 bits (132), Expect = 9e-23 Identities = 259/383 (68%), Gaps = 11/383 (3%) Strand=Plus/Minus Query 6552 CTGCGTCTGGCTCTGTTGCAGGCACAGCTGGCCGAGTTCCCGGCTACCGGTATTGTCCTT 6611 |||||||| || || ||||||||||| | || |||||||| | || ||| || Sbjct 2309 CTGCGTCTCGCCATGCTGCAGGCACAGTTAGCACGTTTCCCGGCATCAGGCCATGTTCTG 2250 Query 6612 AACCCGGCAGATTGGGCCGGCATTGAACTCCTGAAGGACACTCAGGGCCGCTACATCCTG 6671 | | || |||||| ||||| || || || || | ||| || ||||||||| Sbjct 2249 CATTTTACTGACTGGGCCAAAATTGAGCTGAGTAAAGATACGCTGGGGCGTTACATCCTG 2190 Query 6672 GGTAATCCGCAGGGCACC-CTGGCC---CCAACTCTGTGGGGTCTGCCGGTTGTTGCAAC 6727 | ||||| ||| ||| || || ||| | ||||||||||| || || ||||| Sbjct 2189 GCCAATCCTT----CACAACTGACCACTCCTACTTTATGGGGTCTGCCAGTAGTGGCAAC 2134 Query 6728 TCAGGC-GATGGCTG--TGGGCCAGTTCCTGACCGGTGCCTTTGATGCCGGTGCACAGGT 6784 | || | | | | || | |||||||| || || ||| | ||||||| ||| | Sbjct 2133 GGAAGCTGCTCAGTTCCTCGGTAAATTCCTGACGGGCGCGTTTAACTCCGGTGCGCAGAT 2074 Query 6785 CTTTGATCGCTGGGCCGCCCGCGTTGAGGTTGCCACCGAGAATCAGGATGACTTCATCAA 6844 ||||| ||| | || ||||| |||| ||| ||| || ||||||||||| || Sbjct 2073 TTTTGACCGCGAAGATGCAAACGTTGTGGTTTCCAGCGAAAACCAGGATGACTTTGAGAA 2014 Query 6845 GAACATGGTCACCATCCTGGCCGAAGAGCGCTTGGCTCTGGCGGTCTATCGTCCGGAGTC 6904 ||||||| || | |||| ||||||||| | ||||||||||| |||||||| || | Sbjct 2013 GAACATGATCTCAATCCGCTGCGAAGAGCGTCTTGCTCTGGCGGTTTATCGTCCTGAAGC 1954 Query 6905 CTTCATCAAGGGTTCCCTGGCTG 6927 || | | || |||||| ||| Sbjct 1953 GTTTGTGTATGGCTCCCTGACTG 1931 >seq38026 Length=5128 Score = 111 bits (122), Expect = 4e-20 Identities = 239/354 (68%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 6552 CTGCGTCTGGCTCTGTTGCAGGCACAGCTGGCCGAGTTCCCGGCTACCGGTATTGTCCTT 6611 || |||||||| || |||||||||| ||||| |||||||| ||||| ||||||| Sbjct 4527 CTCCGTCTGGCAATGCTGCAGGCACAACTGGCTCGCTTCCCGGCGTCCGGTCATGTCCTT 4586 Query 6612 AACCCGGCAGATTGGGCCGGCATTGAACTCCTGAAGGACACTCAGGGCCGCTACATCCTG 6671 || || ||||| ||||| || || || | | ||||||||| |||||| Sbjct 4587 CACTTCATTGACTGGGCGAAGATTGAGCTGACTAAAGATTCGCTGGGCCGCTATATCCTG 4646 Query 6672 GGTAATCC-GCAGGGCACCCTGGCCCCAACTCTGTGGGGTCTGCCGGTTGTTGCAACTCA 6730 | |||||| || | || | || || ||| ||||||| |||||||| || || || | Sbjct 4647 GCTAATCCAGCGGCGCTTGCGGGTCC-AACATTGTGGGGCCTGCCGGTAGTGGCTACAGA 4705 Query 6731 GGCGATGGCTGT---GGGCCAGTTCCTGACCGGTGCCTTTGATGCCGGTGCACAGGTCTT 6787 || ||| | ||| | ||||||||||||||||| |||| || || ||| | || Sbjct 4706 AGCATCTGCTTTCCAGGGTAAATTCCTGACCGGTGCCTTCAATGCAGGCGCCCAGATTTT 4765 Query 6788 TGATCGCTGGGCCGCCCGCGTTGAGGTTGCCACCGAGAATCAGGATGACTTCATCAAGAA 6847 |||||| | ||| ||||| | | || || || |||||||| || || Sbjct 4766 CGATCGCGAAGATGCCAACGTTGTTATCTCAACGGAAAACGGCGATGACTTTGAGAAAAA 4825 Query 6848 CATGGTCACCATCCTGGCCGAAGAGCGCTTGGCTCTGGCGGTCTATCGTCCGGA 6901 |||| || | || | |||||| || |||| ||||| ||| | || || || Sbjct 4826 CATGATCTCAATTCGTTGCGAAGAACGTCTGGCGCTGGCCGTCAAACGCCCCGA 4879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140045370235200