Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq33499 361 6e-95 seq31280 235 6e-57 seq38626 114 1e-20 seq62284 109 6e-19 seq40411 93.3 5e-14 seq41062 82.4 9e-11 >seq33499 Length=26748 Score = 361 bits (400), Expect = 6e-95 Identities = 575/822 (70%), Gaps = 2/822 (0%) Strand=Plus/Minus Query 76650 TTACGAGAATCGAAAATCACTTTACCAGCATAATCCGAACCCATTACAGTTTGAGGTACG 76709 ||||||| ||| | ||||| ||||| | || || ||| || || ||||| ||||| Sbjct 24093 TTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTGTGGTACA 24034 Query 76710 CCACCTTTATAGCGGGTAGAGTAGTTCATCTGTACATCCAGTTCTTTCCAGCGGATCATT 76769 ||||||| || || ||||| | || || |||| |||||| || ||||| Sbjct 24033 CCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACGAATCATC 23974 Query 76770 TCCGGTGTAATGGTGCGTTGCAGGGCGGCGTTGGCTTCTGCTTCTTTCTTCGCTGCATAC 76829 || || || || || |||| | ||| ||||| |||||||| | || ||||| Sbjct 23973 TCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGCAGCATAT 23914 Query 76830 AGACGGGCATCAGCATCACGTTCGTTAGCGATTGCAGCGTTTTCACGCGCCTGACGATCT 76889 | ||||| ||||| |||||||| || || | || | ||| || | ||||| Sbjct 23913 AATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTCTCGATCA 23854 Query 76890 GCTTCCGCTTGTTTTACTGCTTGTAATGAAGTCTGTT-CTACTTTTTGCAGTTCAGCTTT 76948 || || || | || |||||||| || ||| | ||||| | ||| ||||| | Sbjct 23853 GCCTCTGCCTTCTTAACTGCTTGCTGTGTT-TCTTTAGCTACTCGGTCCAGATCAGCCTG 23795 Query 76949 AGCAGCGTTAACCTGTTCTTCGCGGATCTTCGTGTTAGTTACCTGTTCCATGATAACTTC 77008 || ||||||||||||||||| || ||||| || || |||||||| | |||||| || || Sbjct 23794 TGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGATTACATC 23735 Query 77009 CGGCAGGGTGATATCCTGCAAGAATACCTGTTTCACAGTGTAACCGTAAGGCCGCGCATA 77068 |||| ||||||||| |||||||| | | ||| ||||| ||||| ||||| || || || Sbjct 23734 AGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACGTGCGTA 23675 Query 77069 ATCTTCTACTTCCTGCTGAATTGCAATTTGCAGTTGGTTTTGGATCTTCGCATCAAACAG 77128 |||| | ||| | | || | |||| || || |||| || | |||| Sbjct 23674 GGCTTCAATTTCAGCTTTTACTGAATCCTGCAACTGCGCCTGAATCTCAGCGTTGAACAA 23615 Query 77129 GTCTTGCGCTTTCGGTACGGATTTACCAAATTCGCGAACAGTGGAAAGTAGTTTTTCAGT 77188 || || |||||||| || ||||||||||| || || |||||||| | || |||| Sbjct 23614 ATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAAAGCTTTTGCTC 23555 Query 77189 TACATACTTATCCAGTGCCTGATCCTGATTACCCGCGTTGATACGGTTAATCGGTGCTTT 77248 ||||| |||||||| || || || ||| | || || || || ||||| || ||||| || Sbjct 23554 AACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTCATAGGTGCCTT 23495 Query 77249 GCTACCGTCGAATTGCAGCATTACGGTCATATCCACAGTGGATTTAAATTTATCCTGGGA 77308 ||| || || |||| ||| |||||||||||||| || |||||||| |||||||| Sbjct 23494 AGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAACTTATCCTGACT 23435 Query 77309 TGGAACCTGTAATTTGTCGAACTTCATCGCGATGTCTTTGGTGCTGAACGTATCAAACGT 77368 || || || ||||| || | | || ||| ||||| || ||||| || ||||| | Sbjct 23434 CGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAAGTCTCAAAGCT 23375 Query 77369 TGCCAGCGGGTTTACAATGTGGAAACCGGGCAGTACGGGTTTCGGTGATACTTTACCCAT 77428 ||| | ||||| || | ||||| || ||| ||| || || || ||||||||||| Sbjct 23374 TGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTAACTTTACCCAT 23315 Query 77429 GAAGGTTTCAGTTTTAACCGTACCGTCTTGCACAATGGTATA 77470 ||||||| ||||| || ||||| |||||||| ||| |||| Sbjct 23314 AAAGGTTTGTGTTTTTACTGTACCATCTTGCACGATGATATA 23273 >seq31280 Length=10079 Score = 235 bits (260), Expect = 6e-57 Identities = 444/645 (69%), Gaps = 20/645 (3%) Strand=Plus/Minus Query 40448 AAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCC 40507 ||| | || || ||||| ||||| ||| |||| || ||||| || || || |||||| | Sbjct 1751 AAAATCTCCCTGCCGACGCCAATCATGTCGGGAGTGCGTACGCCAACCCGTCAGTTCAGC 1692 Query 40508 AGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT--- 40564 ||||| | ||||||| || || || | ||| | ||||| ||||| Sbjct 1691 TCCTGTGTCCTGATTGAATGTGGCGACAGCCTGGATTCCATCAACGCG---ACCTCCAGC 1635 Query 40565 GCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGC 40624 || || ||||| || |||||||||| || |||||||| |||||||||| | ||| ||| Sbjct 1634 GCTATTGTGAAATACGTTTCACAACGCGCAGGTATTGGTATTAACGCGGGTCGTATCCGC 1575 Query 40625 GCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGG 40684 || |||| || || || ||||||||| | ||||| ||| || || |||| Sbjct 1574 GCGCTGGGCAGCCCGATTCGCGGCGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTAC 1515 Query 40685 AAACATATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCA 40744 || || | || || || || ||||||||||| ||||| ||||| ||||| || || || Sbjct 1514 AAGCACTTCCAGACAGCGGTGAAATCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCG 1455 Query 40745 ACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAAC 40804 || |||| ||||| | |||||||||||||| |||| ||| | || |||| |||||| Sbjct 1454 ACGCTGTTCTATCCGATGTGGCATCTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAAC 1395 Query 40805 AAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTG 40864 || || |||| |||||||| ||||| | || || ||||| ||||| ||| | || Sbjct 1394 CGTGGTGTGGAAGGTAACCGCGTACGTCACATGGACTACGGTGTGCAGCTCAACAAAATG 1335 Query 40865 ATGTATAAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTCCGGATGTTGCTAAC 40924 ||||| | ||| | |||| | || |||| ||||||||||| ||| | | || | Sbjct 1334 ATGTACCAGCGCCTGCTGAAGGGCGAGGACATCACGCTGTTTAGCCCGTCAGACG-TACC 1276 Query 40925 GATCGTCTGTATGATCTGTTCTATGAAGCTGATCAGACTGCATTTGAAGAACTGT--ATG 40982 | | ||||| ||| ||||| | || |||||| | ||||||| || | | Sbjct 1275 --TGGCCTGTACGATGCGTTCTTT---GCCGATCAGGACGAATTTGAACGTCTTTACACC 1221 Query 40983 AAAGCCTGGAAAAAGATCCAACTG--TTCGTAAGAAACGCATCAAAGCGGTTGACCTGTT 41040 ||| | ||| |||| || | | |||||||| | || | |||||||| || ||||| Sbjct 1220 AAATAC--GAACAAGA--CAGCAGCATTCGTAAGCAGCGTGTGAAAGCGGTAGATCTGTT 1165 Query 41041 CCAACTTTTAGCACAGGAACGCGCACAGACAGGACGCAAATACAT 41085 | || | ||||||||||| || || |||| ||||| Sbjct 1164 CTCGCTGATGATGCAGGAACGCGCCTCTACCGGCCGCATCTACAT 1120 >seq38626 Length=1471 Score = 114 bits (126), Expect = 1e-20 Identities = 469/730 (64%), Gaps = 17/730 (2%) Strand=Plus/Plus Query 152188 TCCCGACTAAACGCGATCTTCTGGCGGGTATCGTTTCTAAACATATGGCGCGTAACCATA 152247 ||||||| |||||||| | ||||| || || || | |||||| || | | || | Sbjct 668 TCCCGACCCAACGCGATTTGCTGGCCGGGATTGTGGCGAAACATTACGCCCAGCAGCAAA 727 Query 152248 TTCTACCGAAACATATTGTAGAGGCGCATGATTCCGGTGATATTCATTATCACGATCTGG 152307 | || || || | || |||||||||| ||| || || |||||||||||||| | Sbjct 728 TCCTGCCTCGTGATGTGGTTCAGGCGCATGAGCGCGGCGAGATCCATTATCACGATCTCG 787 Query 152308 ATTACAGCCCGTTCA-CCCCATACACTAACTGCTGTCTTGTTGACCTAAAAGGCATGTTA 152366 ||||| || ||| |||||| ||||||| || | || || ||||||||| | Sbjct 788 ATTACGCGCCTTTCTTCCCCATGTT-TAACTGCATGCTGATCGATCTGAAAGGCATGCTG 846 Query 152367 GAAAACGGGTTCCGTATGGGTAACGCTGATATCGAACCGCCTAAATCAATCGGTGTTGCT 152426 ||||| || ||||| ||||| || ||||| ||||| | || || | | || Sbjct 847 ACCAACGGTTTTAAAATGGGCAACGCGGAGATCGAGCCGCCCAGGTCGATTGCTACCGCC 906 Query 152427 ACTGCTCTTATGGCTCAGATCACCGCACAGATTGCTTCTCACCAGTACGGCGGGACAACC 152486 ||||| | | || || |||| || ||| |||| || || ||||| || || Sbjct 907 ACTGCGGTGACTGCGCAAATCATTGCCCAGGTTGCCAGCCATATCTATGGCGGAACCACG 966 Query 152487 TTTGCAAATGTCGATCAGGTGCTGGCCCCTTACGTTGAAATGACGTACAACAAACACTTT 152546 | | | || |||||||||| || || ||||| | | | | || | Sbjct 967 CTGAATCGTATTGACGAGGTGCTGGCACCCTATGTTGAGAAAAGTTTTGCCCGGCA---T 1023 Query 152547 AAAGATGCTGTTTGGTACGGGGTT--CCTAAATCAAAACAGTATGCGATGGAAAAAACAG 152604 ||||| | | | || ||| | || | | || ||||| | || | Sbjct 1024 AAAGAGGTAGCGCAGCACTGGGATATCCCCAGGCGGAAGCCTATGCCCGCCAGCGTACCG 1083 Query 152605 AAAAGGA-TG-TATTCGATGCGTTCCAGTCATACGAATATGAAGTAAACACCTTACATAC 152662 |||| || || ||| || || || ||||| |||||||| |||||||| | ||||| Sbjct 1084 AAAAAGAGTGCTAT--GACGCCTTTCAGTCGCTGGAATATGAGGTAAACACGCTGCATAC 1141 Query 152663 TGCAAATGGACAGACGCCTTTTGTCACAATCACTTTCGGTATGGGTACTGGTTGGCGCGA 152722 ||||| || ||||| || |||||||| | ||||| |||| || | ||| || Sbjct 1142 GGCAAACGGCCAGACACCGTTTGTCACGTTTGGGTTCGGGTTGGGGACAAGCTGGGCCGC 1201 Query 152723 ACGCATGATCCAGAAAGCGATTCTGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGCAT 152782 || || | |||| | | || || |||||| | |||||||||||||| ||| Sbjct 1202 CCGTCTGGTGCAGACATCCATCTTGCGTAACCGTCTGGCAGGACTGGGTAAAAATCGCAA 1261 Query 152783 TACCCCTGTATTCCCAAAACTGGTTATGTTT---ATGGAAAAAGGGATTAACCTTAATCC 152839 || | || ||||| || |||| ||||| || |||| |||||| | ||| Sbjct 1262 AACGGCCGTCTTCCCGAAGCTGG---TGTTTGCGATTCGGGAAGGCGTTAACCGTCGTCC 1318 Query 152840 GGAAGACAGAAACTATGATATTAAGAAATTGGCCCTGGAATGTGCTTCAAAGCGTATGTA 152899 || || |||||||| |||||| || |||| |||| ||||| || || ||||| Sbjct 1319 GGGCGATGTGAACTATGACATTAAGCAACTGGCGCTGGCCTGTGCCAGCAAACGAATGTA 1378 Query 152900 TCCGGATATT 152909 ||| |||||| Sbjct 1379 TCCCGATATT 1388 >seq62284 Length=976 Score = 109 bits (120), Expect = 6e-19 Identities = 299/447 (67%), Gaps = 12/447 (3%) Strand=Plus/Minus Query 40458 TACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAG 40517 |||| || || |||||||| ||| ||||||| ||| || || ||| |||||| | Sbjct 485 TACCAACACCTATTATGGCTGGTTTACGTACAAATACTCGTCAATTCAGTTCTTGTGTTG 426 Query 40518 TAATTGAATCG-GGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCTGCGATCGTGAAG 40576 |||| |||| || || || | | ||| |||| | ||||| ||| |||| Sbjct 425 TAAT-GAATGTAGGAGACAGCCTAGACAGTATTAGTGCTGGTAATTCTGCAATCATGAAA 367 Query 40577 TATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCT 40636 |||||||| | ||||| | || || || || | |||| ||| | ||||| Sbjct 366 TATATTTCTAAGAAAGCTGGACTAGGTGTAAATTATGGTCGCGTTCGTGCAGTAGGTTCA 307 Query 40637 AAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCC-TTTCTGGAAACATATTCA 40695 |||| ||||||||||| || || || || || ||||||| |||||| || || Sbjct 306 GAAATTCGTGGTGGTGATGCAGTCCACACAGGCTTGATTCCATTTCTGTCGGCAGTGGCA 247 Query 40696 AACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTA 40755 || ||||| |||||||||| |||||||| ||||| ||||| || ||||| | | | Sbjct 246 AA-AACTGTT-AATCCTGTTCTCAGGGTGGTGTTCGAGGTGGAGCAGCAACTGTACACTT 189 Query 40756 TCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGA 40815 ||| | |||||| || ||||| | ||| | || |||| || || |||| ||| Sbjct 188 TCCACTATGGCATTACGAGTTTGAAGATCTTGTAGTACTGAA-AATAATAAAG--GTA-C 133 Query 40816 AGAAAAC---CGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATGTATAA 40872 ||||| | || || | || | |||||| || | ||| ||||| | ||||| | Sbjct 132 AGAAACCTCACGTGTAAGACAGTTAGATTATTGTTTTCAGATTAACAAAACTTTGTATCA 73 Query 40873 ACGCTTAATGAATCGTGATTACATTAC 40899 ||| ||||| | ||| | | ||||| Sbjct 72 ACGTTTAATTGAACGTAAGAATATTAC 46 >seq40411 Length=1793 Score = 93.3 bits (102), Expect = 5e-14 Identities = 212/314 (68%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 153404 TCTACGCGCTGCGACCGAAGCATGGAAAAAGAAAACCGGATTTGGGTTTAGTCTGTATTC 153463 ||| ||||| |||||||| || |||||| | |||| || | ||| ||||| || || Sbjct 387 TCTGCGCGCGGCGACCGACGCCTGGAAAGCGGAAACGGGCTATGGCTTTAGCCTCTACAG 446 Query 153464 AAC-CCCTGCTGAATCTCTATGTCATCGTTTCTGCAAACTAGACTATGAGAAATTCGGAA 153522 || ||| || || || ||||| | ||||||||| ||| || | |||| || Sbjct 447 TACACCCAGCGAAAACT-TATGTGACCGTTTCTGCCGACTGGATGCGGCTGAATTTGGTG 505 Query 153523 GTATCAAAGGGATCACAGATAAAGGCTGGTACACTAACAGTTTTCATCTGGACGTTGACC 153582 | ||||| | || || ||||| | ||||| ||||| || |||||||||||||| Sbjct 506 TGGTAAAAGGCGTGACCGACAAAGGTTATTACACCAACAGCTTCCATCTGGACGTTGAGA 565 Query 153583 GTAAGGTAACACCGTTCGAGAAAATCGACTATGAAGCCGATTAT-CATTACATTGCAACT 153641 ||||| | || | ||| |||||||| | |||||| ||| | || | ||| | Sbjct 566 AGAAGGTGAATCCTTACGAAAAAATCGATTTTGAAGCTCCCTATCCGCCACTCTCCAA-T 624 Query 153642 GCTGGACATATCAGCTATGTAGAATTCCCTGATATGAAAAACAACCTGGAAGCCCTTGAA 153701 | || |||| | || | |||| || || || | ||||||| | || || ||| Sbjct 625 GGCGGTTTTATCTGTTACGGCGAATATCCCAATGTGCAGCACAACCTTAAGGCGCTGGAA 684 Query 153702 AAAGTCTGGGATTA 153715 | ||||||||||| Sbjct 685 GACGTCTGGGATTA 698 >seq41062 Length=2478 Score = 82.4 bits (90), Expect = 9e-11 Identities = 172/254 (68%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 42268 TTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAACT 42327 ||| ||||||||||| ||||||| ||| | || | |||||||| | | | | ||| Sbjct 382 TTTTTTCTGGCGTCCACAAGAAGTTGATTTATCAAAAGACCGTATTGATTTTAAATCACT 441 Query 42328 TCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATAC 42387 | || ||||| || |||||| |||||| | | ||||| || | ||| | Sbjct 442 ACAGGATCATGAGAAGCATATTTTCACTTCTAATTTGAAACGTCAAATTCTTCTTGATTC 501 Query 42388 CATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATC-CGATGTGAGCATGG 42446 |||| || ||||| || ||||| ||| | || |||||||| || | ||| || | Sbjct 502 AGTTCAAGGTCGTGGACCAAACCTAGCACTATTACCAATTGCTTCATTACCTGA-AATTG 560 Query 42447 AAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATA 42506 || | | || ||||| ||||| ||| ||||| | | || |||||| || || |||| Sbjct 561 AATCTTTCATTGAAACTTGGGCATTTTTTGAAAGCGTTCATAGCCGTTCCTATACACATA 620 Query 42507 TTCAACGTAACTTG 42520 || |||||| || Sbjct 621 TTATTCGTAACGTG 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557084767924000