Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020083.1 Length=157834 Score E Sequences producing significant alignments: (Bits) Value seq31280 134 1e-26 seq66454 86.0 6e-12 >seq31280 Length=10079 Score = 134 bits (148), Expect = 1e-26 Identities = 279/407 (69%), Gaps = 10/407 (2%) Strand=Plus/Minus Query 106057 CTGCCGACCCCGATCATGGCTGGCGTCCGTACCCGTACCCGTCAGTTCAGCTCCTGTGTG 106116 |||||||| || |||||| | || || ||||| | ||||||||||||||||||||||| Sbjct 1742 CTGCCGACGCCAATCATGTCGGGAGTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTC 1683 Query 106117 CTGATCAAAGTCGGCGACACGCTGGACTCTATCAAGGCCGCAGGCTCTGCTATCGTTGAC 106176 ||||| || ||||||| ||||| || ||||| || | | ||||| || | Sbjct 1682 CTGATTGAATGTGGCGACAGCCTGGATTCCATCAACGCGACCTCCAGCGCTATTGTGAAA 1623 Query 106177 TA--TGTCAGCAAGCGCGCAGGCATCGGTCTGGACGTGGGGGAGATTCGTGCCCTCGGTG 106234 || | ||| ||| |||||||| || ||| | ||| ||| || || || || || Sbjct 1622 TACGTTTCA-CAA-CGCGCAGGTATTGGTATTAACGCGGGTCGTATCCGCGCGCTGGGCA 1565 Query 106235 CTCCTATCCGTGGCGGTGAGATGGAGCATACCGGAACTATCCCATTCATCAAGAAGTTC- 106293 || || || |||||||| |||||||| |||||| ||| |||| | ||| Sbjct 1564 GCCCGATTCGCGGCGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAGCACTTCC 1505 Query 106294 -GTCGGTGACCTGAAGAGCTGCTCTCAGGGTGGGGTTCGCGGCGGCTCTATGACTGCCTA 106352 | | | | |||| ||| || ||||| || || || |||||| | ||| | Sbjct 1504 AGACAGCG--GTGAAATCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGACGCTGTT 1447 Query 106353 CTATCCGATGTGGCACCT-GCAGTTCCCAGCCATGATTGTTCTGAAGAATAACCGTGGCA 106411 ||||||||||||||| || | ||| |||| || | || ||||| || |||||||| Sbjct 1446 CTATCCGATGTGGCATCTGGAAGTAGAAAGCC-TGTTAGTCCTGAAAAACAACCGTGGTG 1388 Query 106412 CTGAGAACAACCGCGAACGCCGCACTGATTATGGTGTGCAGATCAAC 106458 || ||||||| ||| | || || || ||||||||| ||||| Sbjct 1387 TGGAAGGTAACCGCGTACGTCACATGGACTACGGTGTGCAGCTCAAC 1341 >seq66454 Length=1623 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 19326 ATTTGGTAGTCCCTGTTGGCTTTGAACCAACGACCAAGCGATTATGAGTCGCATGCTCTA 19385 ||||||| |||||| ||| | |||||| ||||| ||| ||||||||| || ||||||| Sbjct 1211 ATTTGGTGATCCCTGCTGGACTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTCTA 1270 Query 19386 ACC-ACTGAGCTAAGGGAC 19403 ||| ||||||||||||||| Sbjct 1271 ACCAACTGAGCTAAGGGAC 1289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504118377672000