Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020197.1 Length=45606 Score E Sequences producing significant alignments: (Bits) Value seq115158 1021 0.0 seq29199 387 4e-103 seq119229 324 4e-84 seq123790 264 3e-66 seq125381 203 9e-48 seq125025 201 3e-47 seq32415 199 1e-46 seq30831 95.1 4e-15 >seq115158 Length=1188 Score = 1021 bits (1132), Expect = 0.0 Identities = 913/1131 (81%), Gaps = 11/1131 (1%) Strand=Plus/Plus Query 41321 GTAATACTTCCTATATCTATTTCAAGTGCGAGTTTTTATTTTTCAAGCCAGTCACGCGCC 41380 || || || || || || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTTATTCTCCCCATTTCCATTTCAAGTGCGAGTTTTTATTTTTCAAGCCAGTCACGCGCC 60 Query 41381 TCTCGTTTAGAACATCGAATCA-CTAAATTGGAAGTTGTCGATCACGAGCTTGAGAAAAC 41439 |||||||||||||||||||||| ||||||| || || || || || || | ||||||| Sbjct 61 TCTCGTTTAGAACATCGAATCAGCTAAATTAGAGGTCGTTGACCATGAAATCGAGAAAAT 120 Query 41440 AATAGAGAGTCATAATCAGCGTCTGGACAAGCATCAAGAAGAACAGAAAATTACTTTTGC 41499 || | | |||||| | ||||| ||||| ||||||||||| || ||||| | | | || Sbjct 121 TATTAAAAACCATAATGATCGTCTTGACAAACATCAAGAAGACCA-AAAATAATTCTAGC 179 Query 41500 TCTCGTCCAACGTATGGACCATCTTAACGAAAACATCGGAGAGCTTAAAGGAGATATTGA 41559 ||| |||||| | ||||||||| |||| || ||| | | ||||| |||||| |||| || Sbjct 180 TCTGGTCCAAAGAATGGACCATATTAATGAGAACGTTGTTGAGCTAAAAGGAAATATAGA 239 Query 41560 GGAAATTAAAAAATTAGTAGATAGAAATTTGAGAGGATAAAGAC--AATGATTAATTTAA 41617 ||| ||||||||||||||||| |||| |||||||||| |||| |||||||||||| | Sbjct 240 AGAAGTTAAAAAATTAGTAGATCGAAACTTGAGAGGATGAAGAATAAATGATTAATTTTA 299 Query 41618 AATTGCGACTAAAAAATAAAGTGACATTATCAGCTCTTATCTCAGCAGTATTCGTTATGT 41677 |||| || | |||||||| ||| || |||||||||||||||||||||| |||||| Sbjct 300 AATTACGTTTGCAAAATAAAACTACACTAGTAGCTCTTATCTCAGCAGTATTCCTTATGT 359 Query 41678 TGGGACAATTTGGGCTTGATATTCCACACAATATCCAAGATGGCATCAATACTCT-ATTG 41736 || |||||| |||||||| |||||||||||||||||||| | | ||||| | |||| Sbjct 360 TGCAACAATTAGGGCTTGAAATTCCACACAATATCCAAGACGCTGTAAATACATTCATTG 419 Query 41737 ATGATATTAGTTATTCTCGGAATCGTTACCGACCCTACTACTAAAGGTATTACGGATAGC 41796 || || ||||| |||||||||||||||||||| || ||||| || ||| | || ||| Sbjct 420 CA-ATTTTGGTTATCCTCGGAATCGTTACCGACCCAACCACTAAGGGGATTGCAGACAGC 478 Query 41797 GAACGAGCATTGAACTACGTTAAACCACTAGACGATAAGGAAGGAAAATAATATGAGTGT 41856 ||||||||||||| ||| | ||||||||||||| |||||||||||||| |||||| | Sbjct 479 GAACGAGCATTGAGCTATGAACAACCACTAGACGAAAAGGAAGGAAAATAGTATGAGCGA 538 Query 41857 T-CAACAATCTATAGTCAATTGGTTTGTTAACCACCGTGGGAAATTGACTTATTCTATGT 41915 | ||||||||||| || ||||||||||||||||| || || |||||||| ||||| |||| Sbjct 539 TACAACAATCTATTGTAAATTGGTTTGTTAACCATCGAGGCAAATTGACCTATTCAATGT 598 Query 41916 ATGGCTCACGCAATGGATCAGATGGTACAGCAGACTGTTCTGGGTCTATGTCACAAGCCT 41975 |||| |||||||| ||| |||| |||||||| ||||| ||||| || || ||||||||| Sbjct 599 ATGGGTCACGCAACGGAGCAGACGGTACAGCTGACTGCTCTGGTTCCATATCACAAGCCC 658 Query 41976 TAAAAGAGGCAGGCATTCCTATCCAAGGGTTGCCATCTACTGTCACTCTTGGTCAACAAC 42035 ||||||| || || ||| ||| ||||| | ||||||||||| || || |||||||||| Sbjct 659 TAAAAGAAGCTGGTATTGGTATTCAAGGTCTACCATCTACTGTTACACTAGGTCAACAAC 718 Query 42036 TTGCTAAAAATGGCTTTTATCGAGTTTCTCGTAACGAGGACTGGGATGCACTTATGGGCG 42095 |||| |||||||| || |||||||| | ||| | || |||||||| | | |||| Sbjct 719 TTGCCAAAAATGGATTCTATCGAGTAAGTATTAATCAAGATTGGGATGCTTTGACAGGCG 778 Query 42096 ATATCGTAATGATGTCGTGGGGAGCAGACATGGCAAGTTCAGGTGGAGCTGGTGGACATG 42155 |||| || | ||||| ||||| | || ||| | | || || |||||||| || || | Sbjct 779 ATATTGTGTTAATGTCATGGGGTTCTGATATGTCCACATCTGGCGGAGCTGGAGGGCACG 838 Query 42156 TTGGCGTCATGATTGATAGCGTAAACTTCATTAGTTGCGACTATTCAACTCAAGGAGCAG 42215 |||| |||||||| ||| | |||| ||||||||||| |||||||||||||| ||| Sbjct 839 TTGGTGTCATGATGGATGCTACATACTTTATTAGTTGCGATTATTCAACTCAAGGGGCAC 898 Query 42216 TAGGACAAGCTATCAATACATATCCGTGGAATGACTACTATGCAGCGAACAAGCCTACAT 42275 || |||||||||||||| || ||||||||||||||||||||||||||||||||| ||| Sbjct 899 CTGGGCAAGCTATCAATACTTACCCGTGGAATGACTACTATGCAGCGAACAAGCCTGCAT 958 Query 42276 ATATAGAGGTTTGGCGCTATGCTGACTCTGCACCACAGACTAATAACAAAGCTAATACAG 42335 |||| ||||| ||||| ||| ||||| ||||||| || || || ||| |||||||||||| Sbjct 959 ATATCGAGGTGTGGCGTTATTCTGACACTGCACCGCAAACCAACAACCAAGCTAATACAG 1018 Query 42336 CAG-TAG-TAACACAAGAGAAGGCATATTATGAAGCCAATGAAGTCAAATACGTTAAT-G 42392 ||| ||| | ||||| | ||||| || |||||||| |||||||| ||| ||||||| | Sbjct 1019 CAGCTAGACACCACAACAAAAGGCTTACTATGAAGCTAATGAAGTTCAATTCGTTAATGG 1078 Query 42393 GAATCTGGCAGATTAGATGTGATTACTTAACACC-AATTGGATTCGATTGG 42442 |||| |||||||| | |||||| || || |||| |||||||||| ||| Sbjct 1079 GAATTTGGCAGATCAAATGTGACTATTTGGCACCTGGTTGGATTCGACTGG 1129 >seq29199 Length=407 Score = 387 bits (428), Expect = 4e-103 Identities = 327/401 (82%), Gaps = 1/401 (0%) Strand=Plus/Plus Query 5528 TATGAGTTTAGATCAAACAGCCAAACAGATGCGTCAGCTATATATGACCACTAGCGATAA 5587 ||||| ||||||||||||||| | ||||||||| |||||||||||||||||| | |||| Sbjct 1 TATGAATTTAGATCAAACAGCTAGACAGATGCGACAGCTATATATGACCACTGCCAATAA 60 Query 5588 ATACTGTGACAAGCACCAACGACAATATGTCACAATTAAGTTTCCTAACTCACAGCCTTA 5647 |||||| || ||||| | ||| | || ||||| ||| || | || ||| |||| || Sbjct 61 ATACTGCGAGAAGCATAATCGAAACTACGTCACTATTCAGCTACCAAACAGCAAGCCATA 120 Query 5648 CACAGTTTGCGAACTGTGTCATCGTGAGGAGCAAGAACGACTGAATGCTATCAAAGCGCA 5707 ||| || || || ||| |||||||| |||||||| |||| |||| |||| ||||| || Sbjct 121 CACTGTATGTGAGACGTGCCATCGTGAAGAGCAAGAGCGACAGAATTCTATTAAAGCACA 180 Query 5708 AGAACAGTATGAGCGTGAGCAAGAACAAAAACGCTTATATTTTCTAAAAGATTTTAGTCT 5767 |||||||| ||||||||||||||| |||||||||||||| ||||| |||||||| || | Sbjct 181 AGAACAGTTTGAGCGTGAGCAAGAGCAAAAACGCTTATACTTTCTCAAAGATTTCAGCTT 240 Query 5768 TCTTGATGACGATTTAAGAAGTGCTAGCTTTGAAAATTATCATGCTGTTACCAAAGAGCA 5827 | ||||| ||||| | ||||||||||||||||| || |||||||||||||||||||| Sbjct 241 GATGGATGATGATTTGA-AAGTGCTAGCTTTGAAACCTACCATGCTGTTACCAAAGAGCA 299 Query 5828 AAAAGAAGACTTGAAGAATGTTAGAGGTCAACTAAAGGGATACCTAGATGGACAAGAGTA 5887 ||| |||||||||||||||||| || ||||||| | |||||| |||| ||||| || || Sbjct 300 AAAGGAAGACTTGAAGAATGTTCGAAGTCAACTCAGAGGATACTTAGACGGACAGGATTA 359 Query 5888 CAATATTGTCCTCATTGGAGACACTGGGGTAGGAAAGAGTC 5928 ||| || || || || || ||||| || || || ||||||| Sbjct 360 CAACATAGTTCTAATAGGTGACACGGGTGTCGGCAAGAGTC 400 >seq119229 Length=828 Score = 324 bits (358), Expect = 4e-84 Identities = 230/261 (88%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 2843 TAGAAAGGATAATACATGAACGAATTAATTAATATAACTTTAAACGAAAATCAAGAGCCT 2902 ||||||||| |||||||||| | |||||||| | ||||||||||||||||| ||||| Sbjct 121 TAGAAAGGACAATACATGAATAATTTAATTAACGTTACTTTAAACGAAAATCATGAGCCG 180 Query 2903 GTTGTTTCCGGAAGACAGTTGCATAAAGC-TCTAGGCGTTAAAACAGCTTATAAAGATTG 2961 |||||||| | |||||||| |||||||| ||||||||| ||||| || || |||||||| Sbjct 181 GTTGTTTCTAGCAGACAGTTACATAAAGCCTCTAGGCGTCAAAACCGCCTACAAAGATTG 240 Query 2962 GTTCCCACGTATGACTGAATATGGTTTTACAGATGGTGAAGACTTTAGCTCATTTTTGAG 3021 ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 241 GTTCCCACGTATGACTGAATATGGTTTTACAGAGGGTGAAGACTTTAGCTCA-TTTTGAG 299 Query 3022 CAAAAGTACCGGAGGGCGACCAAGTCAAGACCACATCATCAAACTAGACATGGCAAAAGA 3081 |||||||||||||||||| ||||| ||||| |||||||| || | |||||||| ||||| Sbjct 300 CAAAAGTACCGGAGGGCGGCCAAGCCAAGATCACATCATTAAGTTGGACATGGCGAAAGA 359 Query 3082 AATTGCAATGATTCAACGTAC 3102 ||| ||||||||||| || || Sbjct 360 AATCGCAATGATTCAGCGAAC 380 >seq123790 Length=336 Score = 264 bits (292), Expect = 3e-66 Identities = 216/261 (83%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 12931 GCCATTAACACAATATATACAGAACTGGGCATTTTAACACCTCGAAAAGTAATTCAATTA 12990 || |||||||| ||||||||||| | |||| |||||||||||| || ||||| |||||| Sbjct 1 GCAATTAACACTGTATATACAGAAATTGGCAGTTTAACACCTCGCAAGGTAATCCAATTA 60 Query 12991 GAGGGGATAATTTCAAAAGAATTATTTGGAAAGATAGCTAAGTACGTATTTAATAAGTAC 13050 ||||| | | || | ||| |||| || |||||||| |||||||| ||||||||||| Sbjct 61 GAGGGTCTTCTGTCTAGAGAGCTATTCGGTAAGATAGCGAAGTACGTCTTTAATAAGTAT 120 Query 13051 GAATGGCCTGAAAGCCTAGATAGCGAAGTTGATCGTATCTATTTAGAATATCGCACCGAA 13110 |||||||| |||||||||||| | ||||||| | |||||||||||||||||||| || Sbjct 121 GAATGGCCAGAAAGCCTAGAT-GAAGAGTTGATAGAATCTATTTAGAATATCGCACTAAA 179 Query 13111 GGTGATTTAGGTCTTGAAAAGGAAAGTGTTAAACGTACACTTTATAAAGCGATTTATATG 13170 ||| || |||||| ||| || |||||||||||||| ||||| ||||||||||| | |||| Sbjct 180 GGTAATCTAGGTCGTGATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATGTCTATG 239 Query 13171 GGCTTGTAGCGGTTCGAATCC 13191 ||||||| ||||||| ||| Sbjct 240 GGCTTGTGAGGGTTCGACTCC 260 >seq125381 Length=275 Score = 203 bits (224), Expect = 9e-48 Identities = 210/274 (77%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 12632 TTGACAATGTAGTTAAGGAGCGCTCGAAGCTATCACATACAACGTTAGAAGATATGAGCG 12691 |||| || || ||||| ||||| ||||| ||||||| | |||| || || |||||||| | Sbjct 273 TTGATAACGTGGTTAAAGAGCGTTCGAA-CTATCACCTTCAACATTGGACGATATGAGTG 215 Query 12692 AGTATCTTACAGACGGTCTAGTTAATGATTTACAAGAATATCTATTAAAGAACTATTCTA 12751 |||||||||| |||| ||||| ||||| |||| ||| ||||| | ||||||||||| Sbjct 214 AGTATCTTACGAACGGCCTAGTGAATGACTTACGAGAGTATCTGGCAGAGAACTATTCTG 155 Query 12752 CTCGACGTGGGTCATGTAAGCCAGATACTGATAAAACTAACGCAGGACTTACAAGAGATC 12811 || ||||||||| |||||||||| |||||||| ||||||| || || || | || | Sbjct 154 ACAGAAGTGGGTCATCTAAGCCAGATGCTGATAAAGCTAACGCTGGGCTGACTAAGGAAC 95 Query 12812 TTTTCATTCAATATCGTAAGGAAATCCAATGGTTAAGAGCAGCACATCCTAACTGCTTTG 12871 ||||| | ||| ||||||||| || ||||||||||||||| |||||| | | Sbjct 94 TTTTCCGAGAGCTTCGAAAGGAAATCGAAGAGTTAAGAGCAGCACACCCTAACCGTAACG 35 Query 12872 CTAACTACATCATGGAATTAAAAGGATGTTCAAA 12905 | | || | |||||| | |||||||| ||||| Sbjct 34 CAGAATATGTTATGGAAGTGAAAGGATGCTCAAA 1 >seq125025 Length=589 Score = 201 bits (222), Expect = 3e-47 Identities = 350/494 (71%), Gaps = 24/494 (5%) Strand=Plus/Minus Query 38444 TCAGAACGTTGGGAATTTGTTGACACATACATGAGTGCATCGAACGAAGGATTTGTGATT 38503 ||||||||| || | ||| | || | |||||| ||||| || ||||| |||| ||| Sbjct 480 TCAGAACGT-GGAATTTTATCGATAGCTACATGGCAGCATCAAATGAAGGTCTTGTTATT 422 Query 38504 GGTAAACAAGATGGAAGCAAGAGC-ATCATGATTAATCCGGACGGTGGCGTAACG--ATG 38560 |||||| |||||| || |||| | |||||| | ||||| |||| ||||| | ||| Sbjct 421 GGTAAA-AAGATG-AATCAAGCTCTATCATGTTCAATCCAAACGG--GCGTATCTCAATG 366 Query 38561 TTT-AG-TGCAGGTAGTAAGACAATG-ACTATTTCTGATGGTAAAGCTGAGGCA----GA 38613 | | || || || | | | |||| || ||||| | |||| | | || || Sbjct 365 TCTCAGCTG--GGAACGAGGTTAATGTACAATTTCAAAAGGTA----TCATCCATATCGA 312 Query 38614 CAATGGTGTTTTCAAGAAAAATCTTAAAGTTGGGCGATATATTGAACAACCATATCACCT 38673 || ||| ||||| ||| | | || | || |||||| || ||| | || | Sbjct 311 AAACGGTATTTTCTCTAAATCTATCCAAATCGGACGATATCGAGAGGAACAAGATTTATT 252 Query 38674 TGACCCAGATATTAATGTAATACGATACGTAGGAGAAGATTAAAATGGCTGAATTTTGGA 38733 | ||||| |||||| || |||||||||||| | ||| ||||||||||||||| Sbjct 251 GAATCCAGACCGTAATGTCATTAGATACGTAGGAGGTGCATAA--TGGCTGAATTTTGGA 194 Query 38734 GTAATAACGACAGAGGTTACAGAATTAGGCTTTGGGTTGACCAAATAAGCCAAGACAAAG 38793 |||||| |||| | || || | || | |||||||| ||||| | | ||||| | Sbjct 193 GTAATA-CGACCGTGGATATCGTATCCGTCTTTGGGTCGACCAGGTTGGTCAAGATATCC 135 Query 38794 TAGCTAATACGAGTCAGGTCAGATTTCAATTGGCACTGTTAAACACAACAACTACTTTTG 38853 | ||||| ||||| || ||||| | ||| || | |||| || |||||||| |||| Sbjct 134 AAAACAATACAAGTCAAGTTAGATTGCGATTAGCGTTACTAAATACGACAACTACGTTTG 75 Query 38854 CTCAATATCAATGTAGTGCTTATATCGATTTTGAAGGACAACGTTTGAATTGGTCTGGTT 38913 ||||||||||||||||||||||| |||| ||| | || ||||| |||||||||||||||| Sbjct 74 CTCAATATCAATGTAGTGCTTATGTCGAATTTAACGGTCAACGATTGAATTGGTCTGGTT 15 Query 38914 CACCTAGCATGCTA 38927 |||||||| | ||| Sbjct 14 CACCTAGCGTTCTA 1 >seq32415 Length=302 Score = 199 bits (220), Expect = 1e-46 Identities = 142/163 (87%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 6236 GAAGACAGGGCTTGGAACTACAAATGAACACGTTTATCAATTTAAAACACAGCAAGACAA 6295 ||||||||| || ||||| || |||||||| ||||||||||||||||| | |||||||| Sbjct 163 GAAGACAGGACTGGGAACAACCAATGAACATGTTTATCAATTTAAAACTAAACAAGACAA 104 Query 6296 GAGGATGATGCTATGACAGAAACAGAAGTTAAACTAAAGCTCTTTGAGGACTACGAGAGC 6355 |||||||||| |||||| ||||||||||| ||| |||||||||||||||||| ||| || Sbjct 103 GAGGATGATGTTATGACTGAAACAGAAGTAAAAACAAAGCTCTTTGAGGACTATGAGCGC 44 Query 6356 ATTCATGGTCTTGTAGTATCAGAAGGGCACAAACAGAAAATGA 6398 |||||||| |||||| | ||| ||| |||||| |||||||||| Sbjct 43 ATTCATGGCCTTGTATTCTCACAAGAGCACAAGCAGAAAATGA 1 >seq30831 Length=459 Score = 95.1 bits (104), Expect = 4e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 34316 GCCACTCCTTGGATGCCTTCAACAAATGAAGTCAAAACTTCTGATTATCCAAGCTATATC 34375 |||||||| | ||||| ||| | | |||| || |||| |||| |||||||| | ||| Sbjct 117 GCCACTCCATACATGCCATCAGCTAGCGAAGCCACAACTGCTGACTATCCAAGTTTCATC 58 Query 34376 GGTCAATACACAAACTATATGGAAGTAGATAGTCCTAATCCTCAAGACTACACATGG 34432 || || |||||| ||| || |||||||||||| |||||||| ||| ||||| ||| Sbjct 57 GGACACTACACAGACTTTACACAAGTAGATAGTCTTAATCCTCGAGATTACACTTGG 1 Score = 91.5 bits (100), Expect = 4e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 37064 ATGCCTTCAGCAAGCGAAGTAACAACTGCTGACTATCCACAATACATTGGTCAATATACG 37123 ||||| ||||| ||||||| |||||||||||||||||| | ||| || || || || Sbjct 105 ATGCCATCAGCTAGCGAAGCCACAACTGCTGACTATCCAAGTTTCATCGGACACTACACA 46 Query 37124 AACTATATGGAAGTAGATAGTCCTAATCCTCAAGACTACACATGG 37168 ||| || |||||||||||| |||||||| ||| ||||| ||| Sbjct 45 GACTTTACACAAGTAGATAGTCTTAATCCTCGAGATTACACTTGG 1 Score = 91.5 bits (100), Expect = 4e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 35240 ATGCCTTCAGCAAGCGAAGTAACAACTGCTGACTATCCACAATACATTGGTCAATATACG 35299 ||||| ||||| ||||||| |||||||||||||||||| | ||| || || || || Sbjct 105 ATGCCATCAGCTAGCGAAGCCACAACTGCTGACTATCCAAGTTTCATCGGACACTACACA 46 Query 35300 AACTATATGGAAGTAGATAGTCCTAATCCTCAAGACTACACATGG 35344 ||| || |||||||||||| |||||||| ||| ||||| ||| Sbjct 45 GACTTTACACAAGTAGATAGTCTTAATCCTCGAGATTACACTTGG 1 Score = 86.0 bits (94), Expect = 2e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 36152 ATGCCTTCAGCAAGCGAAGTAACAACTGCTGACTATCCACAATACATTGGTACA-TATAC 36210 ||||| ||||| ||||||| |||||||||||||||||| | ||| || ||| || || Sbjct 105 ATGCCATCAGCTAGCGAAGCCACAACTGCTGACTATCCAAGTTTCATCGG-ACACTACAC 47 Query 36211 GAACTATATGGAAGTAGATAGTCCTAATCCTCAAGACTACACATGG 36256 ||| || |||||||||||| |||||||| ||| ||||| ||| Sbjct 46 AGACTTTACACAAGTAGATAGTCTTAATCCTCGAGATTACACTTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145591974604800