Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020200.1 Length=36429 Score E Sequences producing significant alignments: (Bits) Value seq74251 152 1e-32 seq83134 107 4e-19 seq98912 104 5e-18 seq1029 80.6 6e-11 >seq74251 Length=708 Score = 152 bits (168), Expect = 1e-32 Identities = 323/470 (69%), Gaps = 28/470 (6%) Strand=Plus/Minus Query 2760 CATGAAATCAAGGCACTGCGCCCGTTCATTCGCCGC--GACTTCACCAAGCTACTCCCGA 2817 || ||| ||||||| |||| || ||| || ||| ||| || || || |||| Sbjct 684 CAGGAACTCAAGGCCCTGCAACCTTTCCGCCGACGCTCGAC--CAAAAACCTGTTCCCCG 627 Query 2818 CCGACGTCTATTCCTGCG-ACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCAC 2876 ||||||| | | ||| ||||||||| ||||||||||||| || |||| || Sbjct 626 GGGACGTCT-TCACGGCGGACGGCCACAAGTTCGACGCCGAGATCATCAACCCTCTGACG 568 Query 2877 GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTCCG 2936 |||| ||| | | | |||||||||||||| | |||||| || ||||| || | | Sbjct 567 GGCCAGCCGTACAGACCGGAAATCACCACGGTTATCGACGTCGCCACCCGGCGCGTAGTG 508 Query 2937 GGATGGTCCACCGGCTTGGCTGAGTCGGCCCTGGTGGTGGTCGATGCCCTGCGCGACGCC 2996 || || |||| ||| ||||||||| | | ||| | || | |||||| |||||| Sbjct 507 GGTATTTCGGTCGGCGAGGCCGAGTCGGCCATCGGTGTGCTGGACG-CCTGCGTGACGCC 449 Query 2997 TGCACCAAGGGCG-GCATTCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTACATCAA 3055 | || || |||| || | |||||||||||||| || ||||||| | ||| Sbjct 448 ATC----CGGTCGTGCATGTTCGCTGTGTTCTACGTGGACAATGGTTCGGGCTTCGCCAA 393 Query 3056 CCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGA-CATGAAAA 3114 ||| ||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 392 TGACACAGTGCGCGA------GGTCG------TGGACCGCCTGGGCGGCGACCATGACGC 345 Query 3115 ACAGCCTGCCCTACAACAGCCAGGCGCG-GGGCGTGATTGAGCGCGTCCACCAGAGCCTG 3173 || |||||||||||||||||||| || || | || | ||||| | |||||||| | | Sbjct 344 ACTCGCTGCCCTACAACAGCCAGGCACGCGGTCCTG-TCGAGCGAG-CCACCAGACCATT 287 Query 3174 TGGATTCGGGCCGCCAAGGAACTGCCCGGATACATCGGCGCCGACATGGA 3223 ||| | || |||||| | ||| || | ||||||||||| |||||||| Sbjct 286 TGGGTCAATGCGGCCAAGAAGCTGACCAGCTACATCGGCGCAGACATGGA 237 >seq83134 Length=949 Score = 107 bits (118), Expect = 4e-19 Identities = 227/332 (68%), Gaps = 5/332 (2%) Strand=Plus/Minus Query 255 ATAGGCCGGATTAGCACTGATGATCGCCAGGCCGCCATTGATCTGCCGCTGGACGCGCTT 314 |||||||||||| ||||| | | | | ||||||| |||||| ||||| | ||||| Sbjct 738 ATAGGCCGGATTGGCACTCAACACCTGGATTCCGCCATCGATCTGGCGCTGTAGCCGCTT 679 Query 315 GGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGCTTCGTCACGAACCTCATTGCA 374 ||| |||| | ||| ||||| || ||||||| || ||| | | | | |||| Sbjct 678 GGCATACAGCAAATGATCAAGGCG-ATTACGTAGAAGGCCTCGGCCTGCAACGTGTTGCG 620 Query 375 ACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAGTGGCTCCATTGAGTCACCGCC 434 || |||| |||||||| || |||||||| | || || || ||||||| ||| | Sbjct 619 ACGTAGGTCCATCATCACAGTGTCGCCATCTGAAAGCACCGGTTCATTTGAGTCTCCGTC 560 Query 435 GATGCGGACGGCCGACATATTCGCGAT-CTCCAGGCC-TTGCTTCCGCAAGCTGTAGCGA 492 | || || || | | ||| | | |||||| || || | || ||| ||| || || Sbjct 559 AACCCGCACCGCTGCTA-ATTGGGAAGGCTCCAGCCCCTTACGTC-GCAGGCTATACCGC 502 Query 493 GTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTCCAGGAGCCGTGACCAGCGCTC 552 || || || | ||| | || | || ||||||| |||||| ||||||||| || Sbjct 501 GTAAAGGCGAGCTGGGTAAGCACCTTGCCCCCCTCATTCCAGGCGCCGTGACCTTGACTG 442 Query 553 ACCCGAGCGTCATACAGAGGGATATAGGCGTA 584 | ||||||||||| || ||||| |||| || Sbjct 441 ATACGAGCGTCATAAAGGGGGATGAAGGCATA 410 >seq98912 Length=625 Score = 104 bits (114), Expect = 5e-18 Identities = 222/328 (68%), Gaps = 14/328 (4%) Strand=Plus/Plus Query 8696 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 8755 || |||||| | ||||||| |||| | |||||| || |||| |||||| || ||||| Sbjct 173 AAGATCCACGTTGCCAAGAAAGAGCTAGCCATGGATGACGACAGCTATCGAGCGATGCTC 232 Query 8756 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 8815 || ||||| || || ||| ||| | ||||| | || ||||||||||||| | ||| Sbjct 233 GCCCGCGTGGCCGGTGTGACTTCGTCTAAGGATCTCGGCCCGCGCCAGGTCGGTGCCGTG 292 Query 8816 CTGGTCGAACTCCAGCGCTTGGGCTGGAAACCGAAGAGCAATCGGCAAGGCCGGGCGACG 8875 || ||| || |||||||||| ||||| || ||| |||||||| | | Sbjct 293 CTACGCGAGTTCGAGCGCTTGGGATGGAAGCCAAAG----------CCGGCCGGGCCAAG 342 Query 8876 CCAAAAG-TGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAG 8934 || | | || | | | | ||| || | || | |||| ||| |||| |||||| Sbjct 343 CCGCATGCGGCGGTAGATCGGGCGAAGCTTG-TCGGCAAGATCGAGGCGCAACTGGCCGA 401 Query 8935 CGCCCATCGCCCCTGGAGCTACGCCGA-CCACATGGCCCGGCGCATGTTCCAGGTCGAGC 8993 || ||||| ||| ||||||||| ||| ||||| ||| | | ||||||||| Sbjct 402 GGCTGGCCGCCCTTGGGACTACGCCGATGCAC-TGGCCAAGCGACTTTATAAGGTCGAGC 460 Query 8994 GGGTCGAGTGGCTGGACGACAGCCAGCT 9021 | | || ||||| || | || ||||| Sbjct 461 GCCTGGAATGGCTCGATGCCAAACAGCT 488 >seq1029 Length=3852 Score = 80.6 bits (88), Expect = 6e-11 Identities = 108/148 (73%), Gaps = 7/148 (5%) Strand=Plus/Minus Query 8493 GACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCCGGTGGCTTCGCC 8552 || ||||||||| | || || || || || || | ||||||||| ||||| |||||| Sbjct 3762 GAGATGTACCAGAGGACCGCCGAGGCCCTGGACCGGATCTGCGCCGCCGGCAGCTTCGAA 3703 Query 8553 GAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGCCGA---AATTGCTGAGCGT 8609 ||| |||||||| | | ||| |||| | ||| |||||| ||| || ||||| Sbjct 3702 CAGCGGGCCGAGGTGTTGACCCTGCTGATCCACTC---TGCCGATCAAATCGCCCAGCGT 3646 Query 8610 GACGCGTCACGTTTTG-CCGAATTGATC 8636 ||| ||||||||||| ||||| || || Sbjct 3645 GACATGTCACGTTTTGCCCGAAATGGTC 3618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116271013602600