Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020202.1 Length=37740 Score E Sequences producing significant alignments: (Bits) Value seq74251 152 1e-32 seq60360 141 2e-29 seq83134 107 5e-19 seq53231 107 5e-19 seq1029 80.6 6e-11 >seq74251 Length=708 Score = 152 bits (168), Expect = 1e-32 Identities = 323/470 (69%), Gaps = 28/470 (6%) Strand=Plus/Minus Query 2762 CATGAAATCAAGGCACTGCGCCCGTTCATTCGCCGC--GACTTCACCAAGCTACTCCCGA 2819 || ||| ||||||| |||| || ||| || ||| ||| || || || |||| Sbjct 684 CAGGAACTCAAGGCCCTGCAACCTTTCCGCCGACGCTCGAC--CAAAAACCTGTTCCCCG 627 Query 2820 CCGACGTCTATTCCTGCG-ACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCAC 2878 ||||||| | | ||| ||||||||| ||||||||||||| || |||| || Sbjct 626 GGGACGTCT-TCACGGCGGACGGCCACAAGTTCGACGCCGAGATCATCAACCCTCTGACG 568 Query 2879 GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTCCG 2938 |||| ||| | | | |||||||||||||| | |||||| || ||||| || | | Sbjct 567 GGCCAGCCGTACAGACCGGAAATCACCACGGTTATCGACGTCGCCACCCGGCGCGTAGTG 508 Query 2939 GGATGGTCCACCGGCCTGGCCGAGTCGGCCCTGGTGGTTGTCGATGCCCTGCGCGACGCC 2998 || || |||| ||||||||||||| | | || | || | |||||| |||||| Sbjct 507 GGTATTTCGGTCGGCGAGGCCGAGTCGGCCATCGGTGTGCTGGACG-CCTGCGTGACGCC 449 Query 2999 TGCACCAAGGGCG-GCATTCCGGCCATCTTCTACGTGGACAACGGCTCAGGCTACGTAAA 3057 | || || |||| || | |||||||||||||| || || |||| || || Sbjct 448 ATC----CGGTCGTGCATGTTCGCTGTGTTCTACGTGGACAATGGTTCGGGCTTCGCCAA 393 Query 3058 CCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGA-CATGAAAA 3116 ||| ||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 392 TGACACAGTGCGCGA------GGTCG------TGGACCGCCTGGGCGGCGACCATGACGC 345 Query 3117 ACAGCCTGCCCTACAACAGCCAGGCGCG-GGGCGTGATTGAGCGCGTCCACCAGAGCCTG 3175 || |||||||||||||||||||| || || | || | ||||| | |||||||| | | Sbjct 344 ACTCGCTGCCCTACAACAGCCAGGCACGCGGTCCTG-TCGAGCGAG-CCACCAGACCATT 287 Query 3176 TGGATTCGGGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGA 3225 ||| | || |||||| | ||| || ||||||||||||| |||||||| Sbjct 286 TGGGTCAATGCGGCCAAGAAGCTGACCAGCTACATCGGCGCAGACATGGA 237 >seq60360 Length=752 Score = 141 bits (156), Expect = 2e-29 Identities = 224/313 (72%), Gaps = 11/313 (4%) Strand=Plus/Plus Query 26499 GCAACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAG---CTGGCCGACGAA 26555 || ||||||||||| || ||||| |||||||||||||| |||| ||||||||||| Sbjct 53 GCCACCGGCAAGGCCGTCTCGGAGACGGTCGCCGAGTT---CAAGCGCCTGGCCGACGAG 109 Query 26556 CCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCCTCGGTTTA 26614 ||| ||| ||||| || || ||| |||||| | || ||||||| |||||| |||| || Sbjct 110 CCGACCAAGGCCTCGGCCGC-GCTGAACGAGCAGTACAACTACCTCACCGCCGCGGTCTA 168 Query 26615 CGAGCAGATAGCCGCCCTCGATCAGCAAGGCGATTCGCTGGGTGCCGCCCAGCTGGCCAT 26674 ||| ||||| || || || |||| ||| | | | |||||| | |||||| Sbjct 169 CGACCAGATCCGGGCGCTGGAGGAGCAGGGCAACAAGACCGCCGCCGCCAACCTGGCCGA 228 Query 26675 GGATGCCTATAGCCAG-GCAATGGACGAGCGGGCGAGCCAGATCGTCGAGAACCTGGGCA 26733 || ||||| ||| | || || | ||||| || | | ||| |||||||| || | Sbjct 229 GGCGACCTAT-GCCGGCGCCTTGCAGGAGCGCGCCAAGAACATCAAGGAGAACCTCGGAA 287 Query 26734 CCCTGGAAACCGCTTGGAAGACCGTTGCCGGGGTGGCCAAGGGCGCCTGGGACGAAATGC 26793 || | || | || ||||||| ||| || | | |||||||| |||||||||| |||| Sbjct 288 CCATTGAGTCTGCCTGGAAGAGCGTCACCAGCGGCGCCAAGGG-GCCTGGGACGCGATGC 346 Query 26794 TCGGCGTGGGCCG 26806 || | | ||||| Sbjct 347 TCAACATCGGCCG 359 >seq83134 Length=949 Score = 107 bits (118), Expect = 5e-19 Identities = 227/332 (68%), Gaps = 5/332 (2%) Strand=Plus/Minus Query 257 ATAGGCCGGATTAGCACTGATGATCGCCAGGCCGCCATTGATCTGCCGCTGGACGCGCTT 316 |||||||||||| ||||| | | | | ||||||| |||||| ||||| | ||||| Sbjct 738 ATAGGCCGGATTGGCACTCAACACCTGGATTCCGCCATCGATCTGGCGCTGTAGCCGCTT 679 Query 317 GGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGCTTCGTCACGAACCTCATTGCA 376 ||| |||| | ||| ||||| || ||||||| || ||| | | | | |||| Sbjct 678 GGCATACAGCAAATGATCAAGGCG-ATTACGTAGAAGGCCTCGGCCTGCAACGTGTTGCG 620 Query 377 ACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAGTGGCTCCATTGAGTCACCGCC 436 || |||| |||||||| || |||||||| | || || || ||||||| ||| | Sbjct 619 ACGTAGGTCCATCATCACAGTGTCGCCATCTGAAAGCACCGGTTCATTTGAGTCTCCGTC 560 Query 437 GATGCGGACGGCCGACATATTCGCGAT-CTCCAGGCC-TTGCTTCCGCAAGCTGTAGCGA 494 | || || || | | ||| | | |||||| || || | || ||| ||| || || Sbjct 559 AACCCGCACCGCTGCTA-ATTGGGAAGGCTCCAGCCCCTTACGTC-GCAGGCTATACCGC 502 Query 495 GTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTCCAGGAGCCGTGACCAGCGCTC 554 || || || | ||| | || | || ||||||| |||||| ||||||||| || Sbjct 501 GTAAAGGCGAGCTGGGTAAGCACCTTGCCCCCCTCATTCCAGGCGCCGTGACCTTGACTG 442 Query 555 ACCCGAGCGTCATACAGAGGGATATAGGCGTA 586 | ||||||||||| || ||||| |||| || Sbjct 441 ATACGAGCGTCATAAAGGGGGATGAAGGCATA 410 >seq53231 Length=1021 Score = 107 bits (118), Expect = 5e-19 Identities = 173/242 (71%), Gaps = 10/242 (4%) Strand=Plus/Plus Query 22018 CACTGCTGAGCT-GGTAGTGGACGGGCGTATCGAGTCCGACACCGCCTGGTTCCTGCTGG 22076 |||||| ||||| ||| || || ||| | || |||||||||||||||||||| | Sbjct 1 CACTGCCGAGCTTGGTGGTCGAGTCGCGCCTGACCTCGGACACCGCCTGGTTCCTGCTCG 60 Query 22077 ACACCACCAAGCCGGTAAAACCGTTCATCT-TCCAGCCCAGGAAGCAGCCGGAATTCGTT 22135 |||||| |||||| || || ||||||| || || | | ||| |||| | ||| Sbjct 61 ACACCAGCAAGCCAGTGCGGCCCTTCATCTATCAAGAGCGCAAGGCA-CCGGTCT-CGTC 118 Query 22136 TCCCAGGTCAACCTGGATTCGGATGACGTCTTCAACCTGCGCAAGCTG---AAGTTCGGC 22192 || || ||| || |||| ||||| ||||||| ||||| |||||||| Sbjct 119 CAGCAAATCGACCCCGAGGCGGACGACGTTTTCAACC---GCAAGGAATACAAGTTCGGT 175 Query 22193 GCCGAAGCCCGCGCTGCTGCCGGTTACGGCTTCTGGCAGCTGGCCTATGGCTCCACCGGC 22252 || ||||| || || || | || || |||||||||||| ||||||||||||| ||||| Sbjct 176 GCGGAAGCGCGGGCAGCGGGGGGCTATGGCTTCTGGCAGATGGCCTATGGCTCGACCGGT 235 Query 22253 AC 22254 || Sbjct 236 AC 237 >seq1029 Length=3852 Score = 80.6 bits (88), Expect = 6e-11 Identities = 108/148 (73%), Gaps = 7/148 (5%) Strand=Plus/Minus Query 9412 GACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCCGGAGGCTTCGCC 9471 || ||||||||| | || || || || || || | ||||||||| ||||| |||||| Sbjct 3762 GAGATGTACCAGAGGACCGCCGAGGCCCTGGACCGGATCTGCGCCGCCGGCAGCTTCGAA 3703 Query 9472 GAGCCGGCCGAGGCGGTCACTTTGCTCCTACACAACGTTGCCGA---AATTGCTGAGCGT 9528 ||| |||||||| | | || |||| | ||| |||||| ||| || ||||| Sbjct 3702 CAGCGGGCCGAGGTGTTGACCCTGCTGATCCACTC---TGCCGATCAAATCGCCCAGCGT 3646 Query 9529 GACGTGTCACGTTTTG-CCGAATTGATC 9555 ||| |||||||||||| ||||| || || Sbjct 3645 GACATGTCACGTTTTGCCCGAAATGGTC 3618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120459722317200