Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020205.1 Length=42963 Score E Sequences producing significant alignments: (Bits) Value seq105717 181 3e-41 seq40890 127 6e-25 seq69765 109 2e-19 >seq105717 Length=348 Score = 181 bits (200), Expect = 3e-41 Identities = 245/339 (72%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 15970 CGCGGGCCGTTCCGCCCGTTCAATAGCGACGAAGCGCTCATCATGGCCGTGTCTG-GCAC 16028 || || || ||||| |||||||| | |||||| || | ||||| || || | | Sbjct 339 CGTGGCCCCTTCCGACCGTTCAACACCGACGAGGCCGCGAAGATGGCAGTTTCCGCGGTG 280 Query 16029 CACCGGCATCGTCACGGTCAGCACCAACGTGGACACCTTCACCGCCGACATGGTGGGTTC 16088 || ||| | || || |||| | |||| ||| | | ||||||| |||||| | || || Sbjct 279 CAG-GGCGTGGTGACCGTCACCGCCAATGTGTCCGCATTCACCGTTGACATGATCGGGTC 221 Query 16089 GCTGCTGTACGTCGAGGAAAAGGAACTGCGCGGCGTGAAGCCGTGGGCGTCGGCCGAAAA 16148 ||| || ||| | ||||| ||||| |||||| ||| |||||||||| | |||||| || Sbjct 220 GCTCCTCTACTTGGAGGAGAAGGAGCTGCGCTCCGTCAAGCCGTGGGTGCAGGCCGAGAA 161 Query 16149 GAACGTGCCGGTGGGCGCGCTTCGCCGGTCGGACAGCAAGGTCTACCGCTGCGTGAGCAT 16208 ||| || || | |||||||| ||||| || |||||||||||||| || ||||| ||| | Sbjct 160 GAATGTCCCTATCGGCGCGCTGCGCCGTTCCGACAGCAAGGTCTATCGATGCGTCAGCGT 101 Query 16209 TCCGGCCAGCCTGGGCAGCAAGGGCACGCCCTACTGGGTCGCCGGCAACGTGCGCCCGAT 16268 ||| | |||||||| ||||||||||| || | || ||||| || || Sbjct 100 TCCCACGGACCTGGGCACGAAGGGCACGCCGTATTACGTGTGCGGCAGTTCACGTCCAGC 41 Query 16269 CCATGACAGCGGCCGTGCCTTCGACGGTCCGCAGGACAT 16307 ||||||| || ||||| ||||| || || |||||||| Sbjct 40 CCATGACGTTGGGCGTGCGTTCGATGGCCCACAGGACAT 2 >seq40890 Length=365 Score = 127 bits (140), Expect = 6e-25 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34946 CCCTTGCGCAAGTATTCGCCGGCAATCTCGGCCAGCTTCCCGAAGAACACCACCCGGTGC 35005 || ||||||| ||| |||||||| |||||| | ||||| ||||||||||| || |||||| Sbjct 34 CCTTTGCGCAGGTACTCGCCGGCGATCTCGCCAAGCTTTCCGAAGAACACGACGCGGTGC 93 Query 35006 CACTGGGTTTCTTCGACCTGGTTGCCCTCGCGGTCTTTCCGCTTCGACGTGGTGGCGATG 35065 |||| ||| ||| ||||||||| ||||| || || ||| |||||||| | | Sbjct 94 CACTCGGTGCGTTCCTGCTGGTTGCCGTCGCGATCCTTGCGCACGCTGGTGGTGGCCAGG 153 Query 35066 GAAATGCGGGTGATGGCCATGCCGCCCTGCGTGTA 35100 || |||||||||||||||||| |||| ||||| Sbjct 154 CTGATCCGGGTGATGGCCATGCCGGCCTGGGTGTA 188 >seq69765 Length=647 Score = 109 bits (120), Expect = 2e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 10197 GACCAGGAATTCACCGTGGAAGCGCTGTATGAGCCGAACCCGGACGCGCGCCCTGGCATG 10256 |||||| | ||||| || ||| ||||| |||| ||||||||||| |||||| |||||| Sbjct 513 GACCAGAAGTTCACGGTCGAATCGCTGATTGAGAAGAACCCGGACGAGCGCCCCGGCATG 572 Query 10257 GGTCCGCTGGGCGTCCAGGCGTCGAAGTTCCGGCCGTTCCGCGAAGTGGTGTGGATCG 10314 |||||| |||| | || || |||||| ||| |||| ||||| ||||||||||||| Sbjct 573 GGTCCGTTGGGTCTGCAAGCTCCGAAGTACCGCCCGTATCGCGAGGTGGTGTGGATCG 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137147461155000