Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq29027 114 3e-21 seq16638 95.1 3e-15 >seq29027 Length=2418 Score = 114 bits (126), Expect = 3e-21 Identities = 205/297 (69%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 25783 GACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTGCCACTTGCGCGTGCG 25842 |||||| | ||| || ||||| | || ||||| ||| | |||||| || || ||||| Sbjct 860 GACAACCACCTCCGTGGTGTAACGTTCCTGACCGCCCTGATCCTGCCATTTACGGGTGCG 919 Query 25843 CAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGC 25902 || || ||||||||| || | || || ||||| || ||| || || ||||| || || Sbjct 920 CAGCTGGCCTTCAATATACACCTGAGAACCTTTACGCAGGTATTCCCCCGCCACTTCCGC 979 Query 25903 CAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTG 25962 || || || | | ||| ||||||||||| || || | ||| | || ||||| Sbjct 980 CAGTTTGCCAAACAGCACGACACGGTGCCATTCGGTGATCTCTTTGTTTTCACCGGTCTG 1039 Query 25963 CTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAA-ATTTGCCACGGCGGTACCGTTAG 26021 |||||| | |||| ||| || | || ||| || || || ||| ||| || | Sbjct 1040 CTTGTCGCGCCAGCTCTCAGAGGTAGCCA-GCGTAATGTTGGCGACAGCGCCACCATTTG 1098 Query 26022 GCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAA 26078 |||| || | |||||||| ||||| || | || ||||||| || || ||||||| Sbjct 1099 GCATGTAACGTACTTCCGGATCCTGACCCAGATTCCCGACAAGAATCACTTTGTTAA 1155 >seq16638 Length=4153 Score = 95.1 bits (104), Expect = 3e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 25782 CGACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTGCCACTTGCGCGTGC 25841 |||| || || || || ||||| |||| ||||| | |||| |||||| ||||| || | Sbjct 3960 CGACCACGATTTCGGTGGTGTAGCGATCCTGACCGTCCTGGCCCTGCCATTTGCGGGTAC 4019 Query 25842 GCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTG 25901 ||| |||| || | || | || ||||| ||||| ||||||||||||| | ||| | Sbjct 4020 GCAGAGTGCCCTCGACATAGACCTGGGAGCCCTTGCGGATGTACTCGCCGGCGATCTCGG 4079 Query 25902 CCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCT 25961 | | ||| | ||||| || |||||||| || || || | |||| || |||| Sbjct 4080 CGAGACGACCGAAGAACACCACGCGGTGCCATTCGGTGCGGTCCTGCTGCTGACCGGTCT 4139 Query 25962 GCTTGTCTTT 25971 ||||||| || Sbjct 4140 GCTTGTCCTT 4149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123469458098400