Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq34312 98.7 3e-16 seq128954 87.8 5e-13 seq42047 87.8 5e-13 >seq34312 Length=1824 Score = 98.7 bits (108), Expect = 3e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 2399 TCGCCTCATGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAGATGTACTCGTGCG 2458 ||||||| || ||| ||||||| || |||| ||||| || |||| |||||| | Sbjct 880 TCGCCTCGTGATCGAAGTAATAGCGAGGTTTCTTGCTGAGCAGAAAAATGTGCTCGTGAG 821 Query 2459 CCTTTGTGCAGCGGTCGCGCACGCTCTCCGGCATTGGGTTTGGCTTGTGCCAGATAATAT 2518 | ||| ||||| |||||| || ||||| | ||||| || ||||||||||| | Sbjct 820 ATCGTACGCAACGGTCTTTCACGCTTTCGGGCATAGCATTTGGTTTATGCCAGATAATTT 761 Query 2519 CCTGACGCAGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGCCAGGGGATGCCGA 2578 | || ||||| ||||| || || | |||| |||| || | |||||||||| ||||| Sbjct 760 CTTGTCGCAGATACCATCCATCATCCTGCAAACCGAAAGCGAGCCGCCAGGGGACGCCGA 701 Query 2579 TAAG 2582 | || Sbjct 700 TCAG 697 Score = 98.7 bits (108), Expect = 3e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 2122 GCCACGCCTGCCGTTGTTCCGCTGCCGCCGAACGGGTCCAGGACTGTGCCGTTTTCCGGG 2181 || ||||| || || || |||||||| |||||||| || || || || |||||| Sbjct 1187 GCTACGCCGGCTGTAGTACCGCTGCCACCGAACGGATCAAGAACCACTCCTCCTTCCGGA 1128 Query 2182 CACCCAGCCAGGATGCACGGCTCAATCAGATCTGGCGGGAAGGTAGCGAAGTGGGCGCCC 2241 ||||| |||||||||||||| ||||| || | ||||||||||| ||||| || || ||| Sbjct 1127 CACCCCGCCAGGATGCACGGTTCAATAAGCTGAGGCGGGAAGGTCGCGAAATGCGCCCCC 1068 Query 2242 TT 2243 || Sbjct 1067 TT 1066 >seq128954 Length=210 Score = 87.8 bits (96), Expect = 5e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 2122 GCCACGCCTGCCGTTGTTCCGCTGCCGCCGAACGGGTCCAGGACTGTGCCGTTTTCCGGG 2181 || ||||| || || || |||||||| |||||||| || || || || |||||| Sbjct 108 GCTACGCCGGCTGTAGTACCGCTGCCACCGAACGGATCAAGAACCACTCCTCCTTCCGGA 49 Query 2182 CACCCAGCCAGGATGCACGGCTCAATCAGATCTGGCGGGAAGGTAGCG 2229 ||||| |||||||||||||| ||||| || | ||||||||||| ||| Sbjct 48 CACCCCGCCAGGATGCACGGTTCAATAAGCTGAGGCGGGAAGGTCGCG 1 >seq42047 Length=5651 Score = 87.8 bits (96), Expect = 5e-13 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 13959 CGCCAACGTGGCGTTCTATCGTCCAGCCATCCATCTTGTGACTCGCGCTCCGGCGCTGCC 14018 ||||||| | || ||| || | |||||| ||| | || ||||| ||||||||||| Sbjct 3297 CGCCAACTTCGCCTTCAGCCGCTCTGCCATCATTCTGGCCACACGCGCCCCGGCGCTGCC 3356 Query 14019 GCAAGAGGGTGACATGGCGGCTGACACAATGATGATGTCCGATCCGCGCTCCGGCTTGAC 14078 | |||| || |||||||||| |||| |||||||| ||||||||||| || | || | Sbjct 3357 GGAAGAAGGCGACATGGCGGATGACCGCATGATGATCACCGATCCGCGCACCAACATGTC 3416 Query 14079 TTTCGA 14084 ||||| Sbjct 3417 GTTCGA 3422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129901090930200